Wall clock time and date at job start Tue Mar 31 2020 14:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47262 * 2 1 4 4 C 1.53001 * 109.47141 * 119.99876 * 2 1 3 5 5 H 1.09002 * 109.99937 * 181.14656 * 4 2 1 6 6 C 1.54312 * 109.77311 * 302.30153 * 4 2 1 7 7 C 1.55159 * 102.86254 * 141.88714 * 6 4 2 8 8 C 1.54910 * 101.58126 * 324.30219 * 7 6 4 9 9 N 1.47021 * 109.88237 * 60.05214 * 4 2 1 10 10 S 1.65597 * 125.64722 * 61.67672 * 9 4 2 11 11 O 1.42101 * 106.40207 * 153.30535 * 10 9 4 12 12 O 1.42101 * 106.40815 * 20.38424 * 10 9 4 13 13 C 1.76198 * 107.22139 * 266.84134 * 10 9 4 14 14 C 1.38663 * 119.87462 * 96.52355 * 13 10 9 15 15 C 1.38614 * 120.49948 * 179.97438 * 14 13 10 16 16 C 1.37634 * 120.25114 * 359.97263 * 15 14 13 17 17 C 1.40706 * 119.74375 * 0.03035 * 16 15 14 18 18 C 1.41397 * 120.24113 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99493 * 150.58166 * 18 17 16 20 20 C 1.39941 * 120.00483 * 330.58491 * 18 17 16 21 21 N 1.30827 * 119.99886 * 347.50184 * 20 18 17 22 22 Si 1.86797 * 120.00112 * 167.50323 * 20 18 17 23 23 H 1.48500 * 109.47193 * 94.99261 * 22 20 18 24 24 H 1.48506 * 109.46913 * 214.99207 * 22 20 18 25 25 H 1.48494 * 109.47121 * 334.98960 * 22 20 18 26 26 C 1.37598 * 119.87774 * 276.25294 * 13 10 9 27 27 H 1.08998 * 109.46962 * 306.74318 * 1 2 3 28 28 H 1.09004 * 109.46960 * 66.74299 * 1 2 3 29 29 H 1.09000 * 109.47169 * 186.74327 * 1 2 3 30 30 H 1.09004 * 109.47051 * 240.00188 * 2 1 3 31 31 H 1.09000 * 109.47340 * 184.27452 * 3 2 1 32 32 H 1.09004 * 109.46620 * 304.27337 * 3 2 1 33 33 H 1.08997 * 109.47197 * 64.26618 * 3 2 1 34 34 H 1.08994 * 110.92706 * 23.47064 * 6 4 2 35 35 H 1.08999 * 110.74327 * 260.21529 * 6 4 2 36 36 H 1.09000 * 111.00582 * 206.23108 * 7 6 4 37 37 H 1.08999 * 111.04122 * 82.38630 * 7 6 4 38 38 H 1.08994 * 110.36832 * 278.17569 * 8 7 6 39 39 H 1.08997 * 110.46142 * 155.89122 * 8 7 6 40 40 H 1.07998 * 119.74706 * 359.96113 * 14 13 10 41 41 H 1.08004 * 119.87336 * 180.02562 * 15 14 13 42 42 H 1.07994 * 120.12957 * 179.97438 * 16 15 14 43 43 H 0.97001 * 120.00159 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.12676 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1298 -0.7085 1.2683 6 6 1.4824 -0.0336 2.5132 7 6 1.1898 -1.2301 3.4567 8 6 0.7150 -2.3095 2.4521 9 7 1.5559 -2.1094 1.2578 10 16 1.9036 -3.2598 0.1184 11 8 1.8036 -4.5167 0.7737 12 8 3.0799 -2.8221 -0.5479 13 6 0.6098 -3.2178 -1.0769 14 6 0.7736 -2.4917 -2.2468 15 6 -0.2355 -2.4501 -3.1962 16 6 -1.4130 -3.1314 -2.9868 17 6 -1.5904 -3.8714 -1.8033 18 6 -2.7960 -4.5748 -1.5771 19 1 -2.7924 -5.4738 -0.9786 20 6 -3.9936 -4.1061 -2.1288 21 7 -4.0514 -2.9039 -2.6415 22 14 -5.5098 -5.1972 -2.1333 23 1 -6.3471 -4.8860 -0.9469 24 1 -6.2934 -4.9507 -3.3705 25 1 -5.0945 -6.6221 -2.0861 26 6 -0.5572 -3.9101 -0.8485 27 1 -0.3633 0.6148 0.8235 28 1 -0.3633 0.4058 -0.9442 29 1 -0.3633 -1.0205 0.1207 30 1 1.8933 -0.5138 -0.8900 31 1 3.1273 1.4435 -0.0766 32 1 1.6155 1.9779 -0.8493 33 1 1.7405 1.9338 0.9257 34 1 0.5665 0.5124 2.2874 35 1 2.2273 0.6302 2.9520 36 1 0.4007 -0.9836 4.1671 37 1 2.0936 -1.5498 3.9753 38 1 -0.3362 -2.1615 2.2048 39 1 0.8706 -3.3071 2.8627 40 1 1.6943 -1.9543 -2.4195 41 1 -0.0970 -1.8818 -4.1041 42 1 -2.1981 -3.0973 -3.7276 43 1 -4.8816 -2.5789 -3.0235 44 1 -0.6812 -4.4782 0.0615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:17 Heat of formation + Delta-G solvation = -66.814703 kcal Electronic energy + Delta-G solvation = -26855.032752 eV Core-core repulsion = 23284.367976 eV Total energy + Delta-G solvation = -3570.664777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.20422 -37.64800 -36.69697 -35.28711 -34.24715 -33.77138 -30.83357 -30.05645 -29.79614 -27.93193 -26.84463 -25.46604 -22.97575 -21.90969 -21.65735 -20.96446 -19.67651 -18.34051 -17.82452 -16.87794 -16.23779 -15.87664 -15.37026 -15.09265 -14.64315 -14.58109 -13.86157 -13.60564 -13.44274 -13.37029 -13.28141 -13.01029 -12.56403 -12.10115 -12.03692 -11.86436 -11.69588 -11.59410 -11.51306 -11.39812 -11.36511 -11.33244 -11.13113 -11.07369 -10.97913 -10.88251 -10.65170 -10.58578 -10.47209 -10.10678 -9.73178 -9.58845 -9.36927 -8.65984 -8.00945 -7.63653 -6.87401 -4.53740 0.98547 2.20588 2.64027 3.00988 3.03489 3.07879 3.53071 3.84987 4.29140 4.45164 4.51746 4.63802 4.86725 5.03067 5.16324 5.27219 5.30708 5.39828 5.51558 5.58812 5.66915 5.78838 5.87219 5.87510 5.91967 6.01973 6.05598 6.11311 6.17416 6.17751 6.27739 6.38609 6.43972 6.52906 6.62357 6.68293 6.76776 6.79629 6.93606 7.06894 7.22767 7.38207 7.72312 7.82699 7.94852 8.41407 8.69031 8.73452 10.08745 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.004574 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.808904 B = 6119.666326 C = 6189.431501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.160 3.840 5 H 0.075 0.925 6 C -0.127 4.127 7 C -0.128 4.128 8 C 0.116 3.884 9 N -1.007 6.007 10 S 2.699 3.301 11 O -0.971 6.971 12 O -0.972 6.972 13 C -0.632 4.632 14 C -0.135 4.135 15 C -0.123 4.123 16 C -0.109 4.109 17 C 0.094 3.906 18 C -0.464 4.464 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.803 5.803 22 Si 0.911 3.089 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.119 4.119 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.281 0.719 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 7.680 7.708 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.199 4.199 4 C 0.054 3.946 5 H 0.093 0.907 6 C -0.166 4.166 7 C -0.167 4.167 8 C -0.009 4.009 9 N -0.844 5.844 10 S 2.798 3.202 11 O -0.962 6.962 12 O -0.963 6.963 13 C -0.724 4.724 14 C -0.156 4.156 15 C -0.142 4.142 16 C -0.129 4.129 17 C 0.090 3.910 18 C -0.494 4.494 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.429 5.429 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.140 4.140 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.140 0.860 43 H 0.092 0.908 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.320 7.209 7.576 12.219 hybrid contribution -1.541 -0.131 -0.523 1.632 sum 4.779 7.078 7.053 11.076 Atomic orbital electron populations 1.21862 0.93978 1.03165 1.01149 1.21660 0.97359 0.96656 0.98386 1.21766 1.00760 0.95520 1.01822 1.21314 0.97855 0.80077 0.95338 0.90681 1.22787 1.01998 0.97444 0.94365 1.22738 1.01627 0.95229 0.97104 1.22023 0.94753 0.99786 0.84383 1.58691 1.64338 1.23796 1.37534 1.01344 0.74260 0.71901 0.72705 1.93517 1.87578 1.39757 1.75300 1.93492 1.45884 1.82210 1.74666 1.29796 1.15920 1.12831 1.13858 1.20068 0.98742 1.02216 0.94582 1.20799 0.94600 1.00668 0.98143 1.21610 0.95661 0.98425 0.97159 1.17660 0.92018 0.91202 0.90101 1.19575 0.91344 1.09714 1.28764 0.90112 1.25876 1.00828 0.94717 0.92797 1.69753 1.28620 1.15113 1.29397 0.86243 0.80376 0.81283 0.78556 1.19512 1.20045 1.18382 1.20763 0.93435 1.00801 0.99032 0.93104 0.92721 0.91247 0.90195 0.92777 0.92463 0.92571 0.89772 0.90681 0.90245 0.90922 0.91218 0.90173 0.87606 0.88487 0.85960 0.90767 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.70 37.16 0.32 -1.84 16 2 C -0.12 -1.68 2.72 -90.62 -0.25 -1.93 16 3 C -0.14 -1.55 9.06 37.16 0.34 -1.22 16 4 C 0.16 2.14 2.62 -66.96 -0.18 1.96 16 5 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 6 C -0.13 -1.30 5.13 -24.90 -0.13 -1.43 16 7 C -0.13 -1.29 7.08 -24.58 -0.17 -1.46 16 8 C 0.12 1.56 7.05 -2.53 -0.02 1.54 16 9 N -1.01 -15.82 2.56 -104.43 -0.27 -16.09 16 10 S 2.70 53.01 5.50 -107.50 -0.59 52.42 16 11 O -0.97 -21.18 16.80 -57.17 -0.96 -22.14 16 12 O -0.97 -20.28 16.25 -57.17 -0.93 -21.21 16 13 C -0.63 -13.72 5.03 -39.66 -0.20 -13.91 16 14 C -0.13 -2.89 8.79 -39.29 -0.35 -3.23 16 15 C -0.12 -2.71 10.02 -39.66 -0.40 -3.10 16 16 C -0.11 -2.66 8.66 -38.87 -0.34 -3.00 16 17 C 0.09 2.38 5.53 -106.82 -0.59 1.79 16 18 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 19 H 0.08 1.99 7.88 -52.48 -0.41 1.58 16 20 C 0.07 1.79 5.21 -17.34 -0.09 1.70 16 21 N -0.80 -19.74 10.98 55.55 0.61 -19.13 16 22 Si 0.91 18.09 29.58 -169.99 -5.03 13.07 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.12 -2.81 9.26 -38.87 -0.36 -3.17 16 27 H 0.05 0.65 6.25 -51.93 -0.32 0.33 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 30 H 0.08 1.29 5.86 -51.93 -0.30 0.98 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 7.08 -51.93 -0.37 0.16 16 34 H 0.08 0.84 5.60 -51.93 -0.29 0.55 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.94 8.05 -51.93 -0.42 0.53 16 39 H 0.08 1.08 7.79 -51.93 -0.40 0.67 16 40 H 0.11 2.10 6.66 -52.49 -0.35 1.75 16 41 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.07 6.34 -52.49 -0.33 2.74 16 43 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 44 H 0.11 2.45 7.75 -52.49 -0.41 2.04 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -29.09 355.81 -11.00 -40.09 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.46 Total: 7.08 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: -2.74 Total: -39.46 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.34 Total: -35.22 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.89 Total: -43.35 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 53.01 SS G_CDS: -0.59 Total: 52.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.09 -11.00 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.722 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds