Wall clock time and date at job start Tue Mar 31 2020 13:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 C 1.53002 * 112.84653 * 295.68353 * 3 2 1 5 5 N 1.46496 * 109.47326 * 297.81114 * 4 3 2 6 6 S 1.65603 * 119.99889 * 162.54089 * 5 4 3 7 7 O 1.42098 * 106.40082 * 178.53684 * 6 5 4 8 8 O 1.42103 * 106.40344 * 311.46246 * 6 5 4 9 9 C 1.76199 * 107.21667 * 65.00128 * 6 5 4 10 10 C 1.38663 * 119.87284 * 269.72374 * 9 6 5 11 11 C 1.38615 * 120.49843 * 179.72490 * 10 9 6 12 12 C 1.37644 * 120.24893 * 0.55074 * 11 10 9 13 13 C 1.40705 * 119.74138 * 359.72869 * 12 11 10 14 14 C 1.41393 * 120.24000 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99865 * 207.37785 * 14 13 12 16 16 C 1.39946 * 120.00141 * 27.38059 * 14 13 12 17 17 N 1.30824 * 119.99939 * 15.31576 * 16 14 13 18 18 Si 1.86800 * 119.99899 * 195.31768 * 16 14 13 19 19 H 1.48497 * 109.47404 * 89.99671 * 18 16 14 20 20 H 1.48504 * 109.46884 * 209.99797 * 18 16 14 21 21 H 1.48506 * 109.47165 * 329.99476 * 18 16 14 22 22 C 1.37596 * 119.88026 * 90.00064 * 9 6 5 23 23 C 1.53772 * 113.61278 * 164.49015 * 3 2 1 24 24 C 1.53949 * 87.02219 * 220.04628 * 23 3 2 25 25 C 1.53773 * 113.61584 * 66.88025 * 3 2 1 26 26 H 1.08997 * 109.47326 * 299.69598 * 1 2 3 27 27 H 1.09006 * 109.47130 * 59.69860 * 1 2 3 28 28 H 1.09004 * 109.47183 * 179.69836 * 1 2 3 29 29 H 1.09002 * 109.47146 * 119.99942 * 2 1 3 30 30 H 1.09008 * 109.47146 * 240.00045 * 2 1 3 31 31 H 1.09002 * 109.47188 * 57.81077 * 4 3 2 32 32 H 1.09004 * 109.47049 * 177.80894 * 4 3 2 33 33 H 0.96997 * 120.00191 * 342.54457 * 5 4 3 34 34 H 1.07993 * 119.75280 * 0.02562 * 10 9 6 35 35 H 1.08002 * 119.87724 * 180.26035 * 11 10 9 36 36 H 1.07998 * 120.12982 * 179.74680 * 12 11 10 37 37 H 0.97001 * 119.99780 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.12363 * 359.97438 * 22 9 6 39 39 H 1.08999 * 113.62295 * 334.56594 * 23 3 2 40 40 H 1.09010 * 113.61696 * 105.47047 * 23 3 2 41 41 H 1.08997 * 113.54120 * 270.81781 * 24 23 3 42 42 H 1.08999 * 113.74750 * 139.93973 * 24 23 3 43 43 H 1.08993 * 113.61772 * 254.53389 * 25 3 2 44 44 H 1.09010 * 113.61464 * 25.35024 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6619 2.2063 -1.2707 5 7 2.2790 1.5593 -2.4312 6 16 1.7175 1.8827 -3.9552 7 8 2.5335 1.1389 -4.8497 8 8 0.3039 1.7490 -3.8988 9 6 2.0437 3.5833 -4.2813 10 6 1.0967 4.5427 -3.9569 11 6 1.3421 5.8847 -4.2025 12 6 2.5268 6.2781 -4.7827 13 6 3.4926 5.3126 -5.1213 14 6 4.7133 5.7049 -5.7171 15 1 5.2442 5.0201 -6.3619 16 6 5.2337 6.9806 -5.4715 17 7 4.7717 7.6953 -4.4779 18 14 6.5879 7.6629 -6.5624 19 1 5.9826 8.4004 -7.7003 20 1 7.4419 8.5859 -5.7725 21 1 7.4159 6.5448 -7.0816 22 6 3.2349 3.9536 -4.8620 23 6 3.5253 1.5706 0.3768 24 6 3.1299 2.8203 1.1843 25 6 1.7237 2.2077 1.2958 26 1 -0.3634 0.5091 0.8927 27 1 -0.3634 0.5185 -0.8873 28 1 -0.3634 -1.0277 -0.0054 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 0.5781 2.2040 -1.3871 32 1 2.0171 3.2341 -1.1961 33 1 3.0164 0.9416 -2.3070 34 1 0.1628 4.2428 -3.5051 35 1 0.5992 6.6240 -3.9420 36 1 2.7143 7.3238 -4.9769 37 1 5.1326 8.5794 -4.3074 38 1 3.9695 3.2042 -5.1176 39 1 3.8918 0.7501 0.9937 40 1 4.1743 1.7856 -0.4723 41 1 3.1597 3.7417 0.6028 42 1 3.6458 2.9063 2.1406 43 1 0.9202 2.9361 1.1877 44 1 1.5952 1.5615 2.1642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:07 Heat of formation + Delta-G solvation = -56.862519 kcal Electronic energy + Delta-G solvation = -25784.690595 eV Core-core repulsion = 22214.457378 eV Total energy + Delta-G solvation = -3570.233218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93492 -37.64896 -36.64131 -35.28982 -34.30636 -33.82491 -32.46306 -30.07732 -29.80422 -26.81021 -25.91398 -25.48332 -24.36899 -21.89692 -21.49701 -20.99994 -19.10393 -18.49119 -17.95074 -16.89811 -16.06023 -15.96088 -15.54770 -15.13310 -15.01623 -14.70810 -14.34315 -14.14490 -13.51525 -13.39142 -13.31220 -12.78755 -12.67146 -12.58521 -12.33350 -12.00670 -11.91461 -11.60333 -11.52410 -11.43571 -11.39605 -11.37161 -11.23670 -11.00437 -10.96368 -10.89402 -10.61464 -10.45854 -10.15326 -10.04150 -9.75841 -9.63168 -9.37910 -9.08273 -8.04951 -7.68730 -6.91207 -4.54858 1.04797 2.18534 2.62390 3.00099 3.04189 3.05978 3.58116 3.83487 4.25291 4.42825 4.46766 4.53488 4.55743 4.82273 4.95746 5.05027 5.24083 5.36117 5.41280 5.46701 5.59156 5.63963 5.65016 5.71752 5.89163 5.92943 5.95086 5.96031 6.03076 6.07967 6.12885 6.16600 6.32756 6.37014 6.44200 6.64236 6.74553 6.83810 7.03421 7.19968 7.26557 7.37082 7.70588 7.80934 7.93307 8.39870 8.66797 8.71444 10.04979 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.003880 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.768432 B = 7215.210735 C = 7949.223616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.088 4.088 4 C 0.143 3.857 5 N -1.117 6.117 6 S 2.690 3.310 7 O -0.974 6.974 8 O -0.975 6.975 9 C -0.633 4.633 10 C -0.146 4.146 11 C -0.122 4.122 12 C -0.114 4.114 13 C 0.092 3.908 14 C -0.463 4.463 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.799 5.799 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.127 4.127 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.413 0.587 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.283 0.717 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -7.723 10.898 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C -0.089 4.089 4 C 0.017 3.983 5 N -0.875 5.875 6 S 2.785 3.215 7 O -0.964 6.964 8 O -0.965 6.965 9 C -0.725 4.725 10 C -0.167 4.167 11 C -0.141 4.141 12 C -0.134 4.134 13 C 0.089 3.911 14 C -0.493 4.493 15 H 0.101 0.899 16 C -0.142 4.142 17 N -0.424 5.424 18 Si 0.737 3.263 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.165 4.165 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.738 -8.006 10.448 13.683 hybrid contribution 1.268 0.979 -0.167 1.611 sum -2.470 -7.027 10.281 12.696 Atomic orbital electron populations 1.21807 0.95701 1.01489 1.02363 1.21439 0.96196 0.95003 1.01763 1.22010 0.96826 0.95659 0.94407 1.21023 0.98061 0.95730 0.83512 1.55473 1.49905 1.59228 1.22938 1.01611 0.73251 0.74817 0.71772 1.93536 1.69873 1.71159 1.61876 1.93507 1.30173 1.86792 1.86056 1.29763 1.04390 1.21480 1.16891 1.20097 0.97595 0.92909 1.06131 1.20816 0.97426 0.94773 1.01120 1.21615 0.91775 1.00300 0.99672 1.17685 0.92787 0.90474 0.90166 1.19617 1.05026 0.98758 1.25872 0.89947 1.25906 0.97795 0.96388 0.94155 1.69766 1.38511 1.10987 1.23153 0.86237 0.80286 0.79409 0.80418 1.19190 1.20225 1.18458 1.20813 0.94730 0.97157 1.01501 1.23028 0.95628 0.98266 1.00327 1.22878 0.96682 0.98144 1.00366 1.22918 0.97630 0.99258 0.96658 0.92753 0.91835 0.93049 0.92061 0.91724 0.90015 0.91163 0.75336 0.87591 0.88375 0.85913 0.90651 0.87049 0.90167 0.90876 0.89677 0.91681 0.91197 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.57 37.16 0.36 -1.20 16 2 C -0.11 -1.05 5.26 -26.73 -0.14 -1.19 16 3 C -0.09 -0.92 0.52 -153.70 -0.08 -0.99 16 4 C 0.14 1.86 5.26 -4.04 -0.02 1.84 16 5 N -1.12 -16.04 5.48 -10.61 -0.06 -16.09 16 6 S 2.69 50.02 5.74 -107.50 -0.62 49.40 16 7 O -0.97 -20.44 17.27 -57.17 -0.99 -21.43 16 8 O -0.98 -19.56 16.70 -57.17 -0.95 -20.52 16 9 C -0.63 -13.69 5.94 -39.66 -0.24 -13.93 16 10 C -0.15 -3.12 9.53 -39.29 -0.37 -3.50 16 11 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 12 C -0.11 -2.81 8.67 -38.87 -0.34 -3.15 16 13 C 0.09 2.37 5.55 -106.83 -0.59 1.78 16 14 C -0.46 -11.86 9.05 -37.74 -0.34 -12.21 16 15 H 0.08 2.04 7.89 -52.48 -0.41 1.63 16 16 C 0.08 1.81 5.17 -17.34 -0.09 1.72 16 17 N -0.80 -19.65 11.01 55.55 0.61 -19.04 16 18 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.12 -2.89 9.26 -38.88 -0.36 -3.25 16 23 C -0.14 -1.36 7.02 -25.83 -0.18 -1.55 16 24 C -0.14 -1.44 7.74 -25.83 -0.20 -1.64 16 25 C -0.13 -1.18 6.59 -25.92 -0.17 -1.35 16 26 H 0.05 0.48 7.68 -51.93 -0.40 0.09 16 27 H 0.06 0.73 6.77 -51.93 -0.35 0.38 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.53 8.09 -51.93 -0.42 0.10 16 30 H 0.06 0.66 7.61 -51.92 -0.40 0.27 16 31 H 0.08 1.08 6.34 -51.93 -0.33 0.75 16 32 H 0.07 0.96 7.31 -51.93 -0.38 0.58 16 33 H 0.41 5.10 8.04 -34.47 -0.28 4.82 16 34 H 0.11 2.03 7.59 -52.49 -0.40 1.63 16 35 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.12 3.08 6.29 -52.49 -0.33 2.75 16 37 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 38 H 0.11 2.57 7.60 -52.48 -0.40 2.17 16 39 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.07 0.81 7.83 -51.92 -0.41 0.40 16 41 H 0.08 0.96 7.60 -51.93 -0.39 0.56 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.08 0.67 8.10 -51.92 -0.42 0.25 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -29.53 365.78 -11.24 -40.77 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.56 Total: 10.04 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: -3.17 Total: -41.69 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.55 Total: -35.13 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.94 Total: -41.95 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 50.02 SS G_CDS: -0.62 Total: 49.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.53 -11.24 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.091 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds