Wall clock time and date at job start Tue Mar 31 2020 13:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 C 1.53002 * 112.84653 * 295.68353 * 3 2 1 5 5 N 1.46496 * 109.47326 * 297.81114 * 4 3 2 6 6 S 1.65603 * 119.99889 * 162.54089 * 5 4 3 7 7 O 1.42098 * 106.40082 * 178.53684 * 6 5 4 8 8 O 1.42103 * 106.40344 * 311.46246 * 6 5 4 9 9 C 1.76199 * 107.21667 * 65.00128 * 6 5 4 10 10 C 1.38663 * 119.87284 * 269.72374 * 9 6 5 11 11 C 1.38615 * 120.49843 * 179.72490 * 10 9 6 12 12 C 1.37644 * 120.24893 * 0.55074 * 11 10 9 13 13 C 1.40705 * 119.74138 * 359.72869 * 12 11 10 14 14 C 1.41393 * 120.24000 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99865 * 207.37785 * 14 13 12 16 16 C 1.39946 * 120.00141 * 27.38059 * 14 13 12 17 17 N 1.30824 * 119.99939 * 15.31576 * 16 14 13 18 18 Si 1.86800 * 119.99899 * 195.31768 * 16 14 13 19 19 H 1.48497 * 109.47404 * 89.99671 * 18 16 14 20 20 H 1.48504 * 109.46884 * 209.99797 * 18 16 14 21 21 H 1.48506 * 109.47165 * 329.99476 * 18 16 14 22 22 C 1.37596 * 119.88026 * 90.00064 * 9 6 5 23 23 C 1.53772 * 113.61278 * 164.49015 * 3 2 1 24 24 C 1.53949 * 87.02219 * 220.04628 * 23 3 2 25 25 C 1.53773 * 113.61584 * 66.88025 * 3 2 1 26 26 H 1.08997 * 109.47326 * 299.69598 * 1 2 3 27 27 H 1.09006 * 109.47130 * 59.69860 * 1 2 3 28 28 H 1.09004 * 109.47183 * 179.69836 * 1 2 3 29 29 H 1.09002 * 109.47146 * 119.99942 * 2 1 3 30 30 H 1.09008 * 109.47146 * 240.00045 * 2 1 3 31 31 H 1.09002 * 109.47188 * 57.81077 * 4 3 2 32 32 H 1.09004 * 109.47049 * 177.80894 * 4 3 2 33 33 H 0.96997 * 120.00191 * 342.54457 * 5 4 3 34 34 H 1.07993 * 119.75280 * 0.02562 * 10 9 6 35 35 H 1.08002 * 119.87724 * 180.26035 * 11 10 9 36 36 H 1.07998 * 120.12982 * 179.74680 * 12 11 10 37 37 H 0.97001 * 119.99780 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.12363 * 359.97438 * 22 9 6 39 39 H 1.08999 * 113.62295 * 334.56594 * 23 3 2 40 40 H 1.09010 * 113.61696 * 105.47047 * 23 3 2 41 41 H 1.08997 * 113.54120 * 270.81781 * 24 23 3 42 42 H 1.08999 * 113.74750 * 139.93973 * 24 23 3 43 43 H 1.08993 * 113.61772 * 254.53389 * 25 3 2 44 44 H 1.09010 * 113.61464 * 25.35024 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6619 2.2063 -1.2707 5 7 2.2790 1.5593 -2.4312 6 16 1.7175 1.8827 -3.9552 7 8 2.5335 1.1389 -4.8497 8 8 0.3039 1.7490 -3.8988 9 6 2.0437 3.5833 -4.2813 10 6 1.0967 4.5427 -3.9569 11 6 1.3421 5.8847 -4.2025 12 6 2.5268 6.2781 -4.7827 13 6 3.4926 5.3126 -5.1213 14 6 4.7133 5.7049 -5.7171 15 1 5.2442 5.0201 -6.3619 16 6 5.2337 6.9806 -5.4715 17 7 4.7717 7.6953 -4.4779 18 14 6.5879 7.6629 -6.5624 19 1 5.9826 8.4004 -7.7003 20 1 7.4419 8.5859 -5.7725 21 1 7.4159 6.5448 -7.0816 22 6 3.2349 3.9536 -4.8620 23 6 3.5253 1.5706 0.3768 24 6 3.1299 2.8203 1.1843 25 6 1.7237 2.2077 1.2958 26 1 -0.3634 0.5091 0.8927 27 1 -0.3634 0.5185 -0.8873 28 1 -0.3634 -1.0277 -0.0054 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 0.5781 2.2040 -1.3871 32 1 2.0171 3.2341 -1.1961 33 1 3.0164 0.9416 -2.3070 34 1 0.1628 4.2428 -3.5051 35 1 0.5992 6.6240 -3.9420 36 1 2.7143 7.3238 -4.9769 37 1 5.1326 8.5794 -4.3074 38 1 3.9695 3.2042 -5.1176 39 1 3.8918 0.7501 0.9937 40 1 4.1743 1.7856 -0.4723 41 1 3.1597 3.7417 0.6028 42 1 3.6458 2.9063 2.1406 43 1 0.9202 2.9361 1.1877 44 1 1.5952 1.5615 2.1642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:07 Heat of formation + Delta-G solvation = -74.040740 kcal Electronic energy + Delta-G solvation = -25785.435499 eV Core-core repulsion = 22214.457378 eV Total energy + Delta-G solvation = -3570.978121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78414 -39.45793 -38.26018 -36.91477 -35.66264 -35.44097 -33.27385 -31.91532 -31.60385 -27.82268 -27.34247 -26.69130 -25.24526 -23.67468 -22.81825 -22.27610 -20.62491 -19.64929 -19.46680 -18.31365 -17.73103 -17.23922 -16.88180 -16.59892 -16.37583 -16.16531 -15.47754 -15.16194 -15.13324 -15.01817 -14.38070 -14.31399 -13.78414 -13.66028 -13.57642 -13.31711 -13.21146 -13.14177 -13.08210 -13.03749 -12.96485 -12.80775 -12.62532 -12.48276 -12.22253 -12.03566 -11.73549 -11.55432 -11.39855 -11.30571 -11.16709 -10.94477 -10.82523 -10.34679 -9.85851 -9.54521 -8.72044 -6.46988 -0.49018 0.39127 0.83155 1.36965 1.45240 1.49659 2.13436 2.17577 2.55951 2.78079 3.42890 3.51108 3.64158 3.69290 3.75956 4.04535 4.11784 4.29075 4.41804 4.44194 4.49257 4.59046 4.68402 4.72602 4.82836 4.88476 4.90892 4.93206 4.99739 5.06200 5.11256 5.16490 5.18722 5.19938 5.25231 5.28739 5.40272 5.53154 5.54881 5.57087 5.64079 5.86731 5.93363 6.08764 6.12091 6.51689 6.79452 6.83841 8.26419 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.003880 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.768432 B = 7215.210735 C = 7949.223616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C -0.087 4.087 4 C 0.135 3.865 5 N -1.101 6.101 6 S 2.720 3.280 7 O -0.997 6.997 8 O -0.984 6.984 9 C -0.640 4.640 10 C -0.144 4.144 11 C -0.123 4.123 12 C -0.135 4.135 13 C 0.064 3.936 14 C -0.502 4.502 15 H 0.077 0.923 16 C 0.039 3.961 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.117 4.117 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.424 0.576 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.291 0.709 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 -8.423 12.490 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.088 4.088 4 C 0.009 3.991 5 N -0.863 5.863 6 S 2.812 3.188 7 O -0.987 6.987 8 O -0.974 6.974 9 C -0.729 4.729 10 C -0.165 4.165 11 C -0.142 4.142 12 C -0.155 4.155 13 C 0.061 3.939 14 C -0.531 4.531 15 H 0.095 0.905 16 C -0.176 4.176 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.164 4.164 23 C -0.172 4.172 24 C -0.185 4.185 25 C -0.155 4.155 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.261 0.739 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.056 -8.684 12.036 15.386 hybrid contribution 1.267 1.125 -0.556 1.783 sum -2.789 -7.559 11.480 14.025 Atomic orbital electron populations 1.21817 0.95805 1.01889 1.01957 1.21466 0.96090 0.94345 1.02458 1.21961 0.97312 0.96040 0.93516 1.21219 0.98031 0.95736 0.84090 1.55109 1.50342 1.59053 1.21804 1.00748 0.72689 0.73115 0.72220 1.93499 1.70401 1.71108 1.63728 1.93492 1.30866 1.86386 1.86627 1.30266 1.03382 1.23777 1.15444 1.20485 0.98322 0.92608 1.05045 1.21155 0.97107 0.96013 0.99936 1.21617 0.92902 0.99656 1.01330 1.18031 0.93426 0.91571 0.90915 1.19844 1.05847 1.00170 1.27254 0.90509 1.26689 0.99925 0.95978 0.95042 1.69800 1.39705 1.11526 1.24066 0.85191 0.77332 0.78643 0.78529 1.18641 1.18963 1.18427 1.20879 0.95976 0.96672 1.02840 1.23078 0.95051 0.98936 1.00134 1.22871 0.97629 0.97361 1.00660 1.22927 0.96999 0.99148 0.96458 0.91588 0.93815 0.92288 0.90072 0.92365 0.89885 0.92044 0.73921 0.84954 0.85421 0.87078 0.89816 0.87327 0.88235 0.92342 0.91598 0.90462 0.91252 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.57 71.98 0.69 -2.07 16 2 C -0.11 -1.80 5.26 30.59 0.16 -1.64 16 3 C -0.09 -1.64 0.52 -51.66 -0.03 -1.66 16 4 C 0.13 3.36 5.26 86.38 0.45 3.82 16 5 N -1.10 -30.66 5.48 -187.49 -1.03 -31.69 16 6 S 2.72 99.72 5.74 -56.49 -0.32 99.39 16 7 O -1.00 -41.76 17.27 -128.00 -2.21 -43.97 16 8 O -0.98 -38.21 16.70 -128.00 -2.14 -40.35 16 9 C -0.64 -27.78 5.94 22.22 0.13 -27.65 16 10 C -0.14 -6.04 9.53 22.46 0.21 -5.83 16 11 C -0.12 -5.42 10.02 22.22 0.22 -5.20 16 12 C -0.14 -6.85 8.67 22.73 0.20 -6.66 16 13 C 0.06 3.40 5.55 -21.29 -0.12 3.28 16 14 C -0.50 -26.75 9.05 23.46 0.21 -26.53 16 15 H 0.08 4.00 7.89 -2.91 -0.02 3.98 16 16 C 0.04 1.90 5.17 85.26 0.44 2.34 16 17 N -0.83 -41.42 11.01 21.83 0.24 -41.18 16 18 Si 0.98 37.38 29.59 68.60 2.03 39.41 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 22 C -0.14 -7.05 9.26 22.73 0.21 -6.83 16 23 C -0.13 -2.46 7.02 31.17 0.22 -2.24 16 24 C -0.15 -2.72 7.74 31.18 0.24 -2.48 16 25 C -0.12 -1.89 6.59 31.12 0.21 -1.69 16 26 H 0.07 0.99 7.68 -2.39 -0.02 0.97 16 27 H 0.04 0.93 6.77 -2.38 -0.02 0.92 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.06 1.06 7.61 -2.38 -0.02 1.05 16 31 H 0.08 2.07 6.34 -2.39 -0.02 2.06 16 32 H 0.06 1.65 7.31 -2.38 -0.02 1.63 16 33 H 0.42 10.07 8.04 -96.75 -0.78 9.29 16 34 H 0.13 4.81 7.59 -2.91 -0.02 4.79 16 35 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.11 5.79 6.29 -2.91 -0.02 5.77 16 37 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 38 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 39 H 0.10 1.46 8.06 -2.39 -0.02 1.44 16 40 H 0.06 1.24 7.83 -2.38 -0.02 1.22 16 41 H 0.07 1.46 7.60 -2.39 -0.02 1.44 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 44 H 0.10 1.28 8.10 -2.38 -0.02 1.26 16 Total: -1.00 -64.08 365.78 0.25 -63.83 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.23 Total: 35.59 kcal Atomic # 6 Polarization: -84.50 SS G_CDS: 3.45 Total: -81.05 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -0.79 Total: -72.87 kcal Atomic # 8 Polarization: -79.97 SS G_CDS: -4.35 Total: -84.32 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: 99.72 SS G_CDS: -0.32 Total: 99.39 kcal Total: -64.08 0.25 -63.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.209 kcal (2) G-P(sol) polarization free energy of solvation -64.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds