Wall clock time and date at job start Tue Mar 31 2020 13:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53003 * 109.47244 * 120.00536 * 2 1 3 5 5 C 1.53002 * 115.54659 * 301.39762 * 4 2 1 6 6 N 1.46498 * 109.47162 * 184.66696 * 5 4 2 7 7 S 1.65598 * 120.00026 * 163.68614 * 6 5 4 8 8 O 1.42095 * 106.40361 * 311.45930 * 7 6 5 9 9 O 1.42107 * 106.39921 * 178.53547 * 7 6 5 10 10 C 1.76199 * 107.21725 * 65.00111 * 7 6 5 11 11 C 1.38657 * 119.87251 * 269.97442 * 10 7 6 12 12 C 1.38619 * 120.50121 * 180.02562 * 11 10 7 13 13 C 1.37631 * 120.24729 * 0.02562 * 12 11 10 14 14 C 1.40704 * 119.74744 * 359.97438 * 13 12 11 15 15 C 1.41397 * 120.24348 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00221 * 334.92012 * 15 14 13 17 17 C 1.39943 * 119.99405 * 154.91654 * 15 14 13 18 18 N 1.30821 * 120.00157 * 342.23418 * 17 15 14 19 19 Si 1.86801 * 119.99947 * 162.23567 * 17 15 14 20 20 H 1.48506 * 109.46934 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47090 * 119.99850 * 19 17 15 22 22 H 1.48493 * 109.47275 * 240.00162 * 19 17 15 23 23 C 1.37596 * 119.88076 * 89.99668 * 10 7 6 24 24 C 1.52998 * 117.50182 * 87.06875 * 4 2 1 25 25 C 1.52995 * 117.49937 * 155.73000 * 4 2 1 26 26 H 1.08995 * 109.46739 * 305.45571 * 1 2 3 27 27 H 1.08993 * 109.47228 * 65.45497 * 1 2 3 28 28 H 1.08997 * 109.46740 * 185.45492 * 1 2 3 29 29 H 1.09005 * 109.47272 * 240.00118 * 2 1 3 30 30 H 1.08999 * 109.47424 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47101 * 300.00345 * 3 2 1 32 32 H 1.08998 * 109.47133 * 60.00075 * 3 2 1 33 33 H 1.08997 * 109.47170 * 64.66072 * 5 4 2 34 34 H 1.08996 * 109.46978 * 304.66488 * 5 4 2 35 35 H 0.96998 * 119.99757 * 343.68000 * 6 5 4 36 36 H 1.07995 * 119.75122 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.87644 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.12809 * 180.02562 * 13 12 11 39 39 H 0.97006 * 119.99839 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.12375 * 0.25653 * 23 10 7 41 41 H 1.08997 * 117.49819 * 215.00447 * 24 4 2 42 42 H 1.09003 * 117.49832 * 0.02562 * 24 4 2 43 43 H 1.09001 * 117.50442 * 359.97392 * 25 4 2 44 44 H 1.09008 * 117.49750 * 144.97067 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.5820 -0.1320 2.5848 6 7 2.2318 -0.8500 3.6840 7 16 2.2525 -0.1935 5.2041 8 8 2.6833 1.1522 5.0542 9 8 2.9157 -1.1337 6.0382 10 6 0.5834 -0.1221 5.7641 11 6 -0.1825 1.0056 5.5107 12 6 -1.4968 1.0759 5.9457 13 6 -2.0558 0.0244 6.6357 14 6 -1.2881 -1.1251 6.8986 15 6 -1.8521 -2.2117 7.6061 16 1 -2.6777 -2.0457 8.2822 17 6 -1.3403 -3.5022 7.4302 18 7 -0.5992 -3.7755 6.3873 19 14 -1.7154 -4.8348 8.6844 20 1 -2.5689 -4.2737 9.7625 21 1 -2.4306 -5.9534 8.0193 22 1 -0.4456 -5.3366 9.2683 23 6 0.0449 -1.1855 6.4516 24 6 2.2101 -2.2397 1.1683 25 6 3.4419 -1.3313 1.1899 26 1 -0.3632 0.5961 0.8371 27 1 -0.3633 0.4269 -0.9347 28 1 -0.3633 -1.0230 0.0977 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.5003 -0.2324 2.6743 34 1 1.8538 0.9226 2.6288 35 1 2.6499 -1.7100 3.5213 36 1 0.2482 1.8356 4.9704 37 1 -2.0840 1.9593 5.7432 38 1 -3.0801 0.0810 6.9734 39 1 -0.2448 -4.6702 6.2652 40 1 0.6447 -2.0611 6.6518 41 1 1.9957 -2.8187 2.0665 42 1 1.9591 -2.7247 0.2249 43 1 4.0008 -1.2190 0.2608 44 1 4.0381 -1.3123 2.1023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:03 Heat of formation + Delta-G solvation = -49.292674 kcal Electronic energy + Delta-G solvation = -25963.577624 eV Core-core repulsion = 22393.672660 eV Total energy + Delta-G solvation = -3569.904964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.28451 -37.63564 -36.54676 -35.20286 -34.24269 -33.83093 -32.88479 -30.26124 -29.60243 -27.20467 -26.44031 -25.48138 -22.48428 -22.30252 -21.81142 -21.15888 -19.08863 -18.62673 -17.87366 -16.95891 -16.30110 -15.96655 -15.15287 -14.99077 -14.86571 -14.73029 -14.09286 -13.95585 -13.53199 -13.35703 -13.26864 -13.12430 -12.73170 -12.68519 -12.08570 -11.90239 -11.63846 -11.52588 -11.47629 -11.42268 -11.35526 -11.25209 -11.21014 -11.19542 -11.10407 -10.80237 -10.61701 -10.52854 -10.11794 -9.97531 -9.89995 -9.47102 -9.36818 -8.93513 -8.11661 -7.64009 -6.95544 -4.53613 1.13847 2.18632 2.68823 3.01240 3.06070 3.07487 3.64967 3.73452 3.83159 4.28268 4.46737 4.53583 4.74363 4.77539 4.87685 5.11346 5.24398 5.28875 5.36845 5.40915 5.62724 5.65654 5.66858 5.76865 5.86917 5.89397 5.92960 5.98302 6.02102 6.06238 6.15300 6.24629 6.28242 6.28714 6.39283 6.49931 6.83092 6.85427 7.06055 7.20792 7.31042 7.45357 7.63795 7.76498 7.99596 8.32523 8.66404 8.70422 10.01808 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.004254 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.706197 B = 6580.430847 C = 6841.016943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C -0.150 4.150 4 C -0.123 4.123 5 C 0.157 3.843 6 N -1.120 6.120 7 S 2.690 3.310 8 O -0.978 6.978 9 O -0.971 6.971 10 C -0.641 4.641 11 C -0.160 4.160 12 C -0.106 4.106 13 C -0.186 4.186 14 C 0.091 3.909 15 C -0.459 4.459 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.792 5.792 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.269 1.269 23 C -0.055 4.055 24 C -0.174 4.174 25 C -0.175 4.175 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.413 0.587 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.285 0.715 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 2.654 -11.858 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.207 4.207 4 C -0.125 4.125 5 C 0.031 3.969 6 N -0.880 5.880 7 S 2.786 3.214 8 O -0.968 6.968 9 O -0.962 6.962 10 C -0.733 4.733 11 C -0.181 4.181 12 C -0.125 4.125 13 C -0.207 4.207 14 C 0.088 3.912 15 C -0.488 4.488 16 H 0.101 0.899 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.194 1.194 23 C -0.076 4.076 24 C -0.211 4.211 25 C -0.212 4.212 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.439 2.905 -11.504 12.668 hybrid contribution -0.846 -1.220 0.354 1.526 sum 3.593 1.685 -11.149 11.834 Atomic orbital electron populations 1.21856 0.94666 1.02369 1.01824 1.20588 0.95910 0.95824 0.94824 1.21866 1.01203 0.95633 1.01994 1.21642 0.99988 0.95258 0.95591 1.20677 0.97149 0.95642 0.83450 1.55617 1.72478 1.34154 1.25704 1.01583 0.75017 0.72944 0.71881 1.93499 1.81137 1.36300 1.85849 1.93546 1.74084 1.63376 1.65160 1.29907 1.22955 1.03292 1.17136 1.20007 0.95072 0.96283 1.06718 1.20624 0.94874 0.97546 0.99468 1.21223 0.98518 0.96333 1.04582 1.17695 0.90908 0.92230 0.90413 1.19634 1.15664 0.91156 1.22393 0.89893 1.25953 0.93197 1.00266 0.95016 1.69737 1.25600 1.22745 1.23593 0.86204 0.79444 0.79763 0.81075 1.18275 1.19833 1.19365 1.21210 0.95401 0.95299 0.95687 1.23095 1.02076 0.92464 1.03490 1.23078 0.90749 1.04147 1.03222 0.92027 0.92813 0.92316 0.91111 0.92552 0.92731 0.92025 0.90796 0.89955 0.75203 0.87678 0.88473 0.88292 0.90379 0.84660 0.88185 0.88721 0.88844 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.78 37.16 0.33 -1.18 16 2 C -0.05 -0.52 2.74 -90.62 -0.25 -0.77 16 3 C -0.15 -1.43 8.96 37.15 0.33 -1.09 16 4 C -0.12 -1.43 1.63 -154.51 -0.25 -1.69 16 5 C 0.16 2.24 5.63 -4.04 -0.02 2.22 16 6 N -1.12 -17.98 5.33 -10.61 -0.06 -18.04 16 7 S 2.69 54.16 5.73 -107.50 -0.62 53.55 16 8 O -0.98 -20.74 16.72 -57.17 -0.96 -21.69 16 9 O -0.97 -22.16 17.26 -57.17 -0.99 -23.15 16 10 C -0.64 -14.59 5.94 -39.66 -0.24 -14.82 16 11 C -0.16 -3.45 9.53 -39.29 -0.37 -3.83 16 12 C -0.11 -2.27 10.02 -39.66 -0.40 -2.66 16 13 C -0.19 -4.36 9.80 -38.87 -0.38 -4.74 16 14 C 0.09 2.35 5.57 -106.82 -0.59 1.75 16 15 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 16 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.79 -19.70 11.00 55.55 0.61 -19.09 16 19 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.05 -1.40 8.15 -38.87 -0.32 -1.72 16 24 C -0.17 -1.95 9.48 -26.70 -0.25 -2.20 16 25 C -0.17 -1.89 9.47 -26.70 -0.25 -2.14 16 26 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.63 6.89 -51.93 -0.36 0.27 16 33 H 0.07 1.10 7.40 -51.93 -0.38 0.71 16 34 H 0.08 1.16 6.45 -51.93 -0.34 0.83 16 35 H 0.41 5.97 5.92 -34.47 -0.20 5.77 16 36 H 0.11 2.05 7.60 -52.49 -0.40 1.65 16 37 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 40 H 0.14 3.60 5.76 -52.48 -0.30 3.30 16 41 H 0.10 1.22 7.01 -51.93 -0.36 0.86 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.11 7.03 -51.92 -0.36 0.74 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -29.80 367.53 -11.04 -40.84 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.45 Total: 12.12 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: -3.10 Total: -43.23 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.55 Total: -37.13 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.94 Total: -44.84 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: 54.16 SS G_CDS: -0.62 Total: 53.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.80 -11.04 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.454 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds