Wall clock time and date at job start Tue Mar 31 2020 13:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53003 * 109.47244 * 120.00536 * 2 1 3 5 5 C 1.53002 * 115.54659 * 301.39762 * 4 2 1 6 6 N 1.46498 * 109.47162 * 184.66696 * 5 4 2 7 7 S 1.65598 * 120.00026 * 163.68614 * 6 5 4 8 8 O 1.42095 * 106.40361 * 311.45930 * 7 6 5 9 9 O 1.42107 * 106.39921 * 178.53547 * 7 6 5 10 10 C 1.76199 * 107.21725 * 65.00111 * 7 6 5 11 11 C 1.38657 * 119.87251 * 269.97442 * 10 7 6 12 12 C 1.38619 * 120.50121 * 180.02562 * 11 10 7 13 13 C 1.37631 * 120.24729 * 0.02562 * 12 11 10 14 14 C 1.40704 * 119.74744 * 359.97438 * 13 12 11 15 15 C 1.41397 * 120.24348 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00221 * 334.92012 * 15 14 13 17 17 C 1.39943 * 119.99405 * 154.91654 * 15 14 13 18 18 N 1.30821 * 120.00157 * 342.23418 * 17 15 14 19 19 Si 1.86801 * 119.99947 * 162.23567 * 17 15 14 20 20 H 1.48506 * 109.46934 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47090 * 119.99850 * 19 17 15 22 22 H 1.48493 * 109.47275 * 240.00162 * 19 17 15 23 23 C 1.37596 * 119.88076 * 89.99668 * 10 7 6 24 24 C 1.52998 * 117.50182 * 87.06875 * 4 2 1 25 25 C 1.52995 * 117.49937 * 155.73000 * 4 2 1 26 26 H 1.08995 * 109.46739 * 305.45571 * 1 2 3 27 27 H 1.08993 * 109.47228 * 65.45497 * 1 2 3 28 28 H 1.08997 * 109.46740 * 185.45492 * 1 2 3 29 29 H 1.09005 * 109.47272 * 240.00118 * 2 1 3 30 30 H 1.08999 * 109.47424 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47101 * 300.00345 * 3 2 1 32 32 H 1.08998 * 109.47133 * 60.00075 * 3 2 1 33 33 H 1.08997 * 109.47170 * 64.66072 * 5 4 2 34 34 H 1.08996 * 109.46978 * 304.66488 * 5 4 2 35 35 H 0.96998 * 119.99757 * 343.68000 * 6 5 4 36 36 H 1.07995 * 119.75122 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.87644 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.12809 * 180.02562 * 13 12 11 39 39 H 0.97006 * 119.99839 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.12375 * 0.25653 * 23 10 7 41 41 H 1.08997 * 117.49819 * 215.00447 * 24 4 2 42 42 H 1.09003 * 117.49832 * 0.02562 * 24 4 2 43 43 H 1.09001 * 117.50442 * 359.97392 * 25 4 2 44 44 H 1.09008 * 117.49750 * 144.97067 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.5820 -0.1320 2.5848 6 7 2.2318 -0.8500 3.6840 7 16 2.2525 -0.1935 5.2041 8 8 2.6833 1.1522 5.0542 9 8 2.9157 -1.1337 6.0382 10 6 0.5834 -0.1221 5.7641 11 6 -0.1825 1.0056 5.5107 12 6 -1.4968 1.0759 5.9457 13 6 -2.0558 0.0244 6.6357 14 6 -1.2881 -1.1251 6.8986 15 6 -1.8521 -2.2117 7.6061 16 1 -2.6777 -2.0457 8.2822 17 6 -1.3403 -3.5022 7.4302 18 7 -0.5992 -3.7755 6.3873 19 14 -1.7154 -4.8348 8.6844 20 1 -2.5689 -4.2737 9.7625 21 1 -2.4306 -5.9534 8.0193 22 1 -0.4456 -5.3366 9.2683 23 6 0.0449 -1.1855 6.4516 24 6 2.2101 -2.2397 1.1683 25 6 3.4419 -1.3313 1.1899 26 1 -0.3632 0.5961 0.8371 27 1 -0.3633 0.4269 -0.9347 28 1 -0.3633 -1.0230 0.0977 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.5003 -0.2324 2.6743 34 1 1.8538 0.9226 2.6288 35 1 2.6499 -1.7100 3.5213 36 1 0.2482 1.8356 4.9704 37 1 -2.0840 1.9593 5.7432 38 1 -3.0801 0.0810 6.9734 39 1 -0.2448 -4.6702 6.2652 40 1 0.6447 -2.0611 6.6518 41 1 1.9957 -2.8187 2.0665 42 1 1.9591 -2.7247 0.2249 43 1 4.0008 -1.2190 0.2608 44 1 4.0381 -1.3123 2.1023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:03 Heat of formation + Delta-G solvation = -66.469119 kcal Electronic energy + Delta-G solvation = -25964.322451 eV Core-core repulsion = 22393.672660 eV Total energy + Delta-G solvation = -3570.649791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23331 -39.43929 -38.27407 -36.93812 -35.65040 -35.34287 -33.86043 -32.08327 -31.40944 -27.95975 -27.62107 -27.31934 -23.59918 -23.34827 -23.16589 -22.96357 -20.58330 -19.79609 -19.56620 -18.46926 -17.92441 -17.35556 -16.77911 -16.57211 -16.28691 -15.99633 -15.41408 -15.11185 -15.06194 -14.87150 -14.44860 -14.37314 -13.94926 -13.71032 -13.66520 -13.29115 -13.19543 -13.08681 -13.07567 -12.89439 -12.87787 -12.85701 -12.60258 -12.31844 -12.24959 -12.09824 -12.02045 -11.66710 -11.41271 -11.36033 -11.16142 -10.98600 -10.82450 -10.20330 -9.92200 -9.48581 -8.75763 -6.44485 -0.49714 0.37627 0.90490 1.36339 1.44917 1.51508 2.10491 2.16576 2.53341 2.76723 2.84918 3.44000 3.51163 3.64403 3.82044 3.95010 4.01142 4.31426 4.35924 4.43801 4.45178 4.51604 4.63784 4.70839 4.78689 4.82547 4.85654 4.91345 4.99303 5.05634 5.07561 5.09168 5.11826 5.20604 5.22697 5.28662 5.37049 5.41043 5.51597 5.57111 5.60787 5.82035 5.92223 6.01644 6.18437 6.45186 6.80357 6.84505 8.24078 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.004254 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.706197 B = 6580.430847 C = 6841.016943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.150 4.150 4 C -0.129 4.129 5 C 0.149 3.851 6 N -1.107 6.107 7 S 2.715 3.285 8 O -0.985 6.985 9 O -1.001 7.001 10 C -0.649 4.649 11 C -0.157 4.157 12 C -0.105 4.105 13 C -0.195 4.195 14 C 0.060 3.940 15 C -0.495 4.495 16 H 0.084 0.916 17 C 0.034 3.966 18 N -0.822 5.822 19 Si 0.980 3.020 20 H -0.255 1.255 21 H -0.261 1.261 22 H -0.268 1.268 23 C -0.087 4.087 24 C -0.177 4.177 25 C -0.169 4.169 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.421 0.579 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.292 0.708 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 3.232 -13.447 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 C -0.207 4.207 4 C -0.130 4.130 5 C 0.024 3.976 6 N -0.870 5.870 7 S 2.808 3.192 8 O -0.975 6.975 9 O -0.991 6.991 10 C -0.739 4.739 11 C -0.178 4.178 12 C -0.124 4.124 13 C -0.215 4.215 14 C 0.057 3.943 15 C -0.524 4.524 16 H 0.102 0.898 17 C -0.182 4.182 18 N -0.447 5.447 19 Si 0.801 3.199 20 H -0.179 1.179 21 H -0.186 1.186 22 H -0.192 1.192 23 C -0.108 4.108 24 C -0.214 4.214 25 C -0.206 4.206 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.258 0.742 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.418 3.497 -13.089 14.250 hybrid contribution -0.831 -1.272 0.742 1.691 sum 3.587 2.225 -12.348 13.049 Atomic orbital electron populations 1.21866 0.94944 1.01809 1.02188 1.20599 0.95623 0.96057 0.94328 1.21875 1.01384 0.95299 1.02184 1.21653 1.00938 0.95629 0.94803 1.20864 0.96643 0.95904 0.84185 1.55303 1.72366 1.34687 1.24623 1.00804 0.73703 0.72428 0.72231 1.93481 1.80830 1.36874 1.86285 1.93500 1.74457 1.64158 1.67002 1.30285 1.24439 1.02895 1.16311 1.20445 0.95266 0.96338 1.05759 1.21059 0.95121 0.98219 0.97973 1.21514 0.99151 0.96211 1.04630 1.18076 0.91543 0.93458 0.91260 1.19889 1.16743 0.92220 1.23576 0.89835 1.26782 0.92786 1.02093 0.96514 1.69788 1.26376 1.23616 1.24945 0.85177 0.79237 0.76982 0.78535 1.17863 1.18596 1.19239 1.21047 0.95591 0.95885 0.98314 1.23133 1.02492 0.92143 1.03665 1.23158 0.90377 1.03102 1.03923 0.93209 0.91217 0.93055 0.89403 0.92281 0.91250 0.93164 0.91640 0.89594 0.74188 0.85155 0.84496 0.86939 0.89747 0.86821 0.89765 0.87028 0.86690 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.78 71.98 0.63 -2.14 16 2 C -0.05 -0.82 2.74 -10.79 -0.03 -0.85 16 3 C -0.15 -2.50 8.96 71.98 0.65 -1.85 16 4 C -0.13 -2.79 1.63 -52.18 -0.08 -2.87 16 5 C 0.15 4.15 5.63 86.38 0.49 4.64 16 6 N -1.11 -35.44 5.33 -187.50 -1.00 -36.44 16 7 S 2.71 109.90 5.73 -56.49 -0.32 109.57 16 8 O -0.98 -40.95 16.72 -128.00 -2.14 -43.09 16 9 O -1.00 -46.78 17.26 -128.00 -2.21 -48.98 16 10 C -0.65 -29.88 5.94 22.22 0.13 -29.74 16 11 C -0.16 -6.62 9.53 22.46 0.21 -6.41 16 12 C -0.10 -4.33 10.02 22.22 0.22 -4.10 16 13 C -0.20 -9.11 9.80 22.73 0.22 -8.89 16 14 C 0.06 3.18 5.57 -21.29 -0.12 3.06 16 15 C -0.50 -26.12 9.05 23.46 0.21 -25.91 16 16 H 0.08 4.20 7.91 -2.92 -0.02 4.18 16 17 C 0.03 1.68 5.14 85.26 0.44 2.12 16 18 N -0.82 -42.28 11.00 21.83 0.24 -42.04 16 19 Si 0.98 37.84 29.59 68.60 2.03 39.87 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 23 C -0.09 -4.60 8.15 22.73 0.19 -4.42 16 24 C -0.18 -3.72 9.48 30.62 0.29 -3.43 16 25 C -0.17 -3.32 9.47 30.62 0.29 -3.03 16 26 H 0.05 1.01 7.35 -2.39 -0.02 1.00 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.28 8.11 -2.38 -0.02 1.26 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.94 6.89 -2.39 -0.02 0.92 16 33 H 0.07 1.93 7.40 -2.39 -0.02 1.91 16 34 H 0.09 2.33 6.45 -2.39 -0.02 2.31 16 35 H 0.42 12.24 5.92 -96.75 -0.57 11.67 16 36 H 0.13 4.78 7.60 -2.91 -0.02 4.76 16 37 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.29 13.55 8.30 -92.70 -0.77 12.78 16 40 H 0.11 6.39 5.76 -2.91 -0.02 6.37 16 41 H 0.08 2.04 7.01 -2.39 -0.02 2.02 16 42 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 1.91 7.03 -2.38 -0.02 1.89 16 Total: -1.00 -64.95 367.53 0.77 -64.18 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: 0.43 Total: 40.77 kcal Atomic # 6 Polarization: -87.57 SS G_CDS: 3.74 Total: -83.83 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -0.76 Total: -78.48 kcal Atomic # 8 Polarization: -87.72 SS G_CDS: -4.35 Total: -92.07 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 16 Polarization: 109.90 SS G_CDS: -0.32 Total: 109.57 kcal Total: -64.95 0.77 -64.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.288 kcal (2) G-P(sol) polarization free energy of solvation -64.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds