Wall clock time and date at job start Tue Mar 31 2020 13:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 C 1.53002 * 110.63857 * 298.31295 * 3 2 1 5 5 C 1.55159 * 110.72084 * 61.45170 * 3 2 1 6 6 C 1.54913 * 101.58106 * 154.04129 * 5 3 2 7 7 N 1.47423 * 104.83379 * 322.99583 * 6 5 3 8 8 S 1.65592 * 125.64825 * 204.09004 * 7 6 5 9 9 O 1.42104 * 106.40259 * 336.48292 * 8 7 6 10 10 O 1.42099 * 106.40456 * 203.56300 * 8 7 6 11 11 C 1.76207 * 107.21956 * 90.02158 * 8 7 6 12 12 C 1.38647 * 119.87564 * 269.98241 * 11 8 7 13 13 C 1.38616 * 120.50421 * 179.97438 * 12 11 8 14 14 C 1.37644 * 120.24317 * 359.71247 * 13 12 11 15 15 C 1.40700 * 119.74202 * 0.58081 * 14 13 12 16 16 C 1.41401 * 120.23920 * 179.69607 * 15 14 13 17 17 H 1.08008 * 119.99395 * 155.72378 * 16 15 14 18 18 C 1.39943 * 120.00382 * 335.44865 * 16 15 14 19 19 N 1.30822 * 119.99923 * 342.30095 * 18 16 15 20 20 Si 1.86802 * 120.00019 * 162.29784 * 18 16 15 21 21 H 1.48507 * 109.46815 * 60.00291 * 20 18 16 22 22 H 1.48501 * 109.47017 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47043 * 300.00170 * 20 18 16 24 24 C 1.37599 * 119.87171 * 90.00092 * 11 8 7 25 25 C 1.47030 * 108.70333 * 24.35362 * 7 6 5 26 26 H 1.08998 * 109.47249 * 300.00116 * 1 2 3 27 27 H 1.08996 * 109.47340 * 59.99912 * 1 2 3 28 28 H 1.09006 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47105 * 240.00356 * 2 1 3 30 30 H 1.08996 * 109.47340 * 120.00087 * 2 1 3 31 31 H 1.09004 * 109.46685 * 181.68804 * 4 3 2 32 32 H 1.08997 * 109.47173 * 301.68365 * 4 3 2 33 33 H 1.08997 * 109.47191 * 61.69016 * 4 3 2 34 34 H 1.09004 * 111.00089 * 35.96871 * 5 3 2 35 35 H 1.08995 * 111.04044 * 272.13308 * 5 3 2 36 36 H 1.08996 * 110.36670 * 204.15548 * 6 5 3 37 37 H 1.09007 * 110.45280 * 81.87752 * 6 5 3 38 38 H 1.08001 * 119.75283 * 0.02562 * 12 11 8 39 39 H 1.08001 * 119.88152 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.12599 * 180.30421 * 14 13 12 41 41 H 0.97000 * 119.99929 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.13373 * 359.97438 * 24 11 8 43 43 H 1.08995 * 109.88046 * 118.12999 * 25 7 6 44 44 H 1.09002 * 109.87868 * 239.30244 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5795 2.1773 -1.2605 5 6 1.5691 2.1913 1.2748 6 6 2.6677 3.2732 1.4237 7 7 3.9152 2.6034 1.0131 8 16 5.4434 3.0418 1.4760 9 8 5.3752 4.4146 1.8364 10 8 6.3236 2.5431 0.4781 11 6 5.8148 2.1572 2.9540 12 6 5.5045 2.7109 4.1867 13 6 5.7903 2.0262 5.3576 14 6 6.3812 0.7841 5.3077 15 6 6.7062 0.2151 4.0626 16 6 7.3192 -1.0575 3.9994 17 1 7.2193 -1.6614 3.1095 18 6 8.0603 -1.5321 5.0875 19 7 8.4806 -0.7001 6.0054 20 14 8.4491 -3.3537 5.2294 21 1 9.2338 -3.7860 4.0451 22 1 9.2404 -3.5963 6.4624 23 1 7.1827 -4.1266 5.2933 24 6 6.4119 0.9197 2.8804 25 6 3.5780 1.4855 0.1196 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9776 3.1920 -1.2554 32 1 1.9425 1.6491 -2.1421 33 1 0.4903 2.2145 -1.2820 34 1 1.5574 1.5249 2.1374 35 1 0.5905 2.6465 1.1222 36 1 2.7375 3.6028 2.4603 37 1 2.4592 4.1203 0.7701 38 1 5.0358 3.6827 4.2350 39 1 5.5447 2.4672 6.3124 40 1 6.5986 0.2502 6.2210 41 1 8.9939 -1.0291 6.7598 42 1 6.6526 0.4902 1.9193 43 1 4.0237 1.6479 -0.8617 44 1 3.9412 0.5494 0.5438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:26 Heat of formation + Delta-G solvation = -71.434814 kcal Electronic energy + Delta-G solvation = -25908.959737 eV Core-core repulsion = 22338.094618 eV Total energy + Delta-G solvation = -3570.865120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.41032 -37.62723 -36.65439 -35.27902 -34.36452 -33.84221 -30.07689 -29.97493 -29.76362 -29.37072 -26.65861 -25.48053 -23.28296 -22.45622 -21.74386 -20.97933 -19.01323 -18.61426 -17.90400 -16.97110 -16.08553 -15.71885 -15.13864 -15.08001 -14.78702 -14.64895 -14.50456 -13.89658 -13.52142 -13.36285 -13.11916 -12.76969 -12.71173 -12.56708 -12.17813 -12.11301 -11.93924 -11.90798 -11.59161 -11.54607 -11.38606 -11.35226 -11.27404 -11.05758 -11.01903 -10.85241 -10.62152 -10.58829 -10.51552 -10.45465 -9.78367 -9.63006 -9.34373 -8.70774 -8.02449 -7.70037 -6.92079 -4.53321 0.96539 2.21270 2.64323 2.99198 3.01255 3.07816 3.54450 3.82677 4.27501 4.28997 4.41467 4.56468 4.68754 4.94364 5.05263 5.19401 5.24950 5.28906 5.40303 5.43225 5.55017 5.57859 5.63303 5.79023 5.81677 5.86277 5.94167 5.99087 6.00561 6.03894 6.07810 6.18092 6.21325 6.31806 6.38820 6.56755 6.65804 6.76906 6.92289 7.04954 7.22580 7.39181 7.72935 7.80273 7.94561 8.39988 8.67117 8.72055 10.03564 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.004158 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.390629 B = 6732.217211 C = 7777.061631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.071 4.071 4 C -0.139 4.139 5 C -0.120 4.120 6 C 0.124 3.876 7 N -1.012 6.012 8 S 2.701 3.299 9 O -0.971 6.971 10 O -0.967 6.967 11 C -0.631 4.631 12 C -0.147 4.147 13 C -0.121 4.121 14 C -0.118 4.118 15 C 0.092 3.908 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.912 3.088 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.126 4.126 25 C 0.129 3.871 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.107 1.297 -7.761 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.072 4.072 4 C -0.196 4.196 5 C -0.159 4.159 6 C -0.002 4.002 7 N -0.849 5.849 8 S 2.799 3.201 9 O -0.962 6.962 10 O -0.958 6.958 11 C -0.723 4.723 12 C -0.169 4.169 13 C -0.140 4.140 14 C -0.138 4.138 15 C 0.089 3.911 16 C -0.490 4.490 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.147 4.147 25 C 0.004 3.996 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.322 1.953 -8.002 15.663 hybrid contribution 0.309 -1.266 0.884 1.575 sum -13.012 0.687 -7.119 14.848 Atomic orbital electron populations 1.21807 0.95701 1.01452 1.01899 1.21529 0.95989 0.94745 1.02606 1.21629 0.93968 0.95863 0.95741 1.21873 1.01083 1.00359 0.96285 1.22907 0.97881 0.97460 0.97671 1.21921 0.83034 0.94975 1.00229 1.58685 1.22174 1.42966 1.61097 1.01357 0.70957 0.73465 0.74273 1.93504 1.85814 1.31920 1.84923 1.93519 1.62108 1.81630 1.58529 1.29827 1.16380 1.10096 1.15953 1.20068 1.06124 0.99254 0.91409 1.20810 1.00795 0.96130 0.96295 1.21638 0.98165 0.95130 0.98863 1.17674 0.90032 0.92624 0.90799 1.19572 1.27474 1.00927 1.01072 0.90007 1.25934 0.93614 1.00135 0.94606 1.69776 1.25870 1.36368 1.09856 0.86293 0.79388 0.82039 0.78648 1.18801 1.20224 1.18708 1.20734 1.02767 0.92719 0.98530 1.21797 0.94791 0.89350 0.93674 0.92537 0.92622 0.92939 0.91670 0.91272 0.92332 0.92382 0.92194 0.90237 0.90236 0.90646 0.91639 0.87727 0.88403 0.85760 0.90490 0.87170 0.91256 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.41 37.16 0.35 -0.82 16 2 C -0.11 -1.02 4.92 -26.73 -0.13 -1.15 16 3 C -0.07 -0.72 0.64 -152.67 -0.10 -0.82 16 4 C -0.14 -1.21 8.02 37.16 0.30 -0.91 16 5 C -0.12 -1.22 4.95 -24.58 -0.12 -1.34 16 6 C 0.12 1.56 6.67 -2.53 -0.02 1.54 16 7 N -1.01 -15.67 3.70 -111.41 -0.41 -16.09 16 8 S 2.70 53.30 5.93 -107.50 -0.64 52.67 16 9 O -0.97 -20.58 16.85 -57.17 -0.96 -21.54 16 10 O -0.97 -21.22 16.84 -57.17 -0.96 -22.18 16 11 C -0.63 -14.14 5.97 -39.66 -0.24 -14.37 16 12 C -0.15 -3.26 9.53 -39.29 -0.37 -3.64 16 13 C -0.12 -2.75 10.02 -39.66 -0.40 -3.14 16 14 C -0.12 -2.96 8.70 -38.87 -0.34 -3.30 16 15 C 0.09 2.40 5.57 -106.82 -0.60 1.80 16 16 C -0.46 -11.86 9.05 -37.74 -0.34 -12.21 16 17 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 18 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.90 10.95 55.55 0.61 -19.29 16 20 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.13 -3.08 9.26 -38.87 -0.36 -3.44 16 25 C 0.13 1.74 6.17 -3.06 -0.02 1.72 16 26 H 0.06 0.43 7.30 -51.93 -0.38 0.05 16 27 H 0.05 0.39 6.61 -51.93 -0.34 0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.71 8.11 -51.93 -0.42 0.28 16 31 H 0.06 0.54 7.54 -51.93 -0.39 0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.44 6.68 -51.93 -0.35 0.09 16 34 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.08 0.64 8.00 -51.93 -0.42 0.22 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16 38 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 39 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 40 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 41 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 42 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 43 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 44 H 0.07 0.97 7.80 -51.93 -0.41 0.56 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -30.28 363.11 -11.11 -41.40 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.71 Total: 4.88 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: -2.47 Total: -38.34 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.20 Total: -35.37 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.93 Total: -43.73 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 53.30 SS G_CDS: -0.64 Total: 52.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.28 -11.11 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.037 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds