Wall clock time and date at job start Tue Mar 31 2020 13:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47444 * 2 1 4 4 C 1.53000 * 110.88390 * 62.42344 * 3 2 1 5 5 C 1.55155 * 111.00097 * 298.55063 * 3 2 1 6 6 C 1.54322 * 102.94114 * 206.42142 * 5 3 2 7 7 N 1.47020 * 107.27186 * 22.18895 * 6 5 3 8 8 S 1.65603 * 125.65176 * 181.02260 * 7 6 5 9 9 O 1.42095 * 106.40432 * 203.56624 * 8 7 6 10 10 O 1.42106 * 106.39730 * 336.48826 * 8 7 6 11 11 C 1.76200 * 107.21697 * 90.02443 * 8 7 6 12 12 C 1.38657 * 119.87350 * 90.00426 * 11 8 7 13 13 C 1.38612 * 120.50214 * 179.97438 * 12 11 8 14 14 C 1.37627 * 120.24847 * 0.02562 * 13 12 11 15 15 C 1.40698 * 119.74462 * 359.97438 * 14 13 12 16 16 C 1.41396 * 120.24582 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00092 * 204.38646 * 16 15 14 18 18 C 1.39952 * 119.99924 * 24.38605 * 16 15 14 19 19 N 1.30816 * 120.00103 * 17.85396 * 18 16 15 20 20 Si 1.86798 * 119.99834 * 197.85870 * 18 16 15 21 21 H 1.48496 * 109.47531 * 89.99943 * 20 18 16 22 22 H 1.48500 * 109.47142 * 209.99930 * 20 18 16 23 23 H 1.48509 * 109.47215 * 329.99529 * 20 18 16 24 24 C 1.37597 * 119.87964 * 269.72756 * 11 8 7 25 25 C 1.47431 * 108.69990 * 1.29024 * 7 6 5 26 26 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47193 * 299.99417 * 1 2 3 28 28 H 1.08994 * 109.47163 * 59.99927 * 1 2 3 29 29 H 1.09005 * 109.47101 * 239.99668 * 2 1 3 30 30 H 1.09000 * 109.47511 * 120.00340 * 2 1 3 31 31 H 1.08998 * 109.47490 * 297.57871 * 4 3 2 32 32 H 1.09005 * 109.46578 * 57.57878 * 4 3 2 33 33 H 1.08997 * 109.46949 * 177.57178 * 4 3 2 34 34 H 1.09004 * 110.72362 * 88.05955 * 5 3 2 35 35 H 1.08998 * 110.87474 * 324.85245 * 5 3 2 36 36 H 1.09002 * 109.88142 * 262.77478 * 6 5 3 37 37 H 1.08997 * 110.01606 * 141.68039 * 6 5 3 38 38 H 1.08010 * 119.74613 * 359.95317 * 12 11 8 39 39 H 1.08002 * 119.87075 * 179.97438 * 13 12 11 40 40 H 1.08004 * 120.13296 * 179.97438 * 14 13 12 41 41 H 0.97003 * 120.00095 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.12283 * 0.02562 * 24 11 8 43 43 H 1.09001 * 110.36407 * 94.48409 * 25 7 6 44 44 H 1.08998 * 110.36088 * 216.79921 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5980 2.1773 1.2671 5 6 1.5727 2.1975 -1.2723 6 6 2.6596 3.2783 -1.4516 7 7 3.8608 2.8109 -0.7444 8 16 5.2924 3.6347 -0.6250 9 8 6.2968 2.6603 -0.3780 10 8 5.3329 4.5306 -1.7274 11 6 5.2005 4.6329 0.8241 12 6 5.6280 4.1245 2.0412 13 6 5.5621 4.8985 3.1892 14 6 5.0697 6.1824 3.1324 15 6 4.6330 6.7088 1.9028 16 6 4.1257 8.0267 1.8322 17 1 3.4483 8.3028 1.0377 18 6 4.5015 8.9735 2.7919 19 7 5.5609 8.7698 3.5319 20 14 3.4903 10.5280 3.0163 21 1 2.4312 10.2877 4.0291 22 1 4.3728 11.6307 3.4752 23 1 2.8631 10.9015 1.7231 24 6 4.7099 5.9159 0.7427 25 6 3.5819 1.4844 -0.1646 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.5096 2.2281 1.2967 32 1 1.9607 1.6404 2.1436 33 1 2.0089 3.1868 1.2637 34 1 0.5964 2.6552 -1.1125 35 1 1.5476 1.5294 -2.1332 36 1 2.3197 4.2207 -1.0220 37 1 2.8814 3.4124 -2.5103 38 1 6.0152 3.1176 2.0951 39 1 5.8975 4.4921 4.1319 40 1 5.0187 6.7837 4.0281 41 1 5.8212 9.4259 4.1974 42 1 4.3812 6.3113 -0.2070 43 1 3.9152 0.6972 -0.8409 44 1 4.0694 1.3842 0.8051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:29 Heat of formation + Delta-G solvation = -71.392982 kcal Electronic energy + Delta-G solvation = -26044.529780 eV Core-core repulsion = 22473.666474 eV Total energy + Delta-G solvation = -3570.863306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.37039 -37.63186 -36.65760 -35.28221 -34.34576 -33.84355 -30.07861 -29.88271 -29.77875 -29.35816 -26.69660 -25.48295 -23.32555 -22.34123 -21.74124 -20.98177 -19.04015 -18.61262 -17.83505 -16.99440 -16.09757 -15.71152 -15.17547 -15.13192 -14.75346 -14.63252 -14.42327 -13.71666 -13.62054 -13.35050 -13.32305 -12.79768 -12.60374 -12.50949 -12.17558 -11.97207 -11.92735 -11.87251 -11.58805 -11.54003 -11.40860 -11.35304 -11.23857 -11.07067 -11.02934 -10.85848 -10.60355 -10.56005 -10.53014 -10.46811 -9.76804 -9.62468 -9.35584 -8.69635 -8.02575 -7.70230 -6.92211 -4.53566 0.96405 2.20959 2.63110 2.99637 3.03432 3.06058 3.54059 3.82724 4.27180 4.30063 4.41421 4.55076 4.71128 4.94694 5.09234 5.16150 5.23187 5.30764 5.40235 5.47628 5.57190 5.59223 5.70497 5.78882 5.85623 5.86433 5.94941 6.02423 6.03352 6.05849 6.13296 6.17806 6.22431 6.34276 6.46291 6.57348 6.65763 6.76768 6.92121 7.04964 7.22282 7.39054 7.72731 7.80416 7.94402 8.40124 8.67071 8.71965 10.03427 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.004036 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.752176 B = 6936.603792 C = 7580.085006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.072 4.072 4 C -0.139 4.139 5 C -0.117 4.117 6 C 0.121 3.879 7 N -1.012 6.012 8 S 2.701 3.299 9 O -0.971 6.971 10 O -0.967 6.967 11 C -0.631 4.631 12 C -0.146 4.146 13 C -0.121 4.121 14 C -0.117 4.117 15 C 0.092 3.908 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.125 4.125 25 C 0.133 3.867 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.283 0.717 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 -12.269 -3.699 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.074 4.074 4 C -0.196 4.196 5 C -0.156 4.156 6 C -0.004 4.004 7 N -0.849 5.849 8 S 2.799 3.201 9 O -0.962 6.962 10 O -0.958 6.958 11 C -0.723 4.723 12 C -0.167 4.167 13 C -0.140 4.140 14 C -0.137 4.137 15 C 0.089 3.911 16 C -0.491 4.491 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.147 4.147 25 C 0.007 3.993 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.680 -12.171 -4.152 15.515 hybrid contribution -0.527 1.162 0.916 1.571 sum -9.207 -11.009 -3.236 14.712 Atomic orbital electron populations 1.21804 0.95664 1.01309 1.02160 1.21463 0.96077 0.94873 1.02177 1.21834 0.94292 0.95397 0.95862 1.21794 1.00965 1.01180 0.95698 1.22723 0.98217 0.97180 0.97453 1.21670 0.84405 0.97739 0.96610 1.58674 1.29755 1.29085 1.67358 1.01366 0.71335 0.72834 0.74562 1.93503 1.54815 1.61062 1.86798 1.93520 1.85530 1.65141 1.51611 1.29818 1.16725 1.09444 1.16264 1.20065 1.05670 0.99060 0.91892 1.20801 1.01347 0.95313 0.96581 1.21636 1.00075 0.93507 0.98502 1.17673 0.90135 0.92865 0.90478 1.19610 1.24970 0.94156 1.10338 0.89963 1.25933 0.93855 1.00360 0.94151 1.69781 1.19088 1.35631 1.17374 0.86242 0.80243 0.80029 0.79871 1.19180 1.20192 1.18429 1.20736 1.03141 0.92827 0.97978 1.22054 0.95018 0.83909 0.98295 0.93062 0.92388 0.92574 0.91777 0.91654 0.92344 0.92440 0.91506 0.90219 0.90766 0.91356 0.91381 0.87760 0.88433 0.85767 0.90555 0.87174 0.91523 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.43 37.16 0.35 -0.76 16 2 C -0.11 -0.89 5.05 -26.73 -0.14 -1.03 16 3 C -0.07 -0.75 0.65 -152.25 -0.10 -0.85 16 4 C -0.14 -1.56 8.23 37.16 0.31 -1.26 16 5 C -0.12 -1.16 4.85 -24.90 -0.12 -1.28 16 6 C 0.12 1.58 6.65 -3.07 -0.02 1.56 16 7 N -1.01 -15.56 3.68 -111.30 -0.41 -15.97 16 8 S 2.70 53.12 5.94 -107.50 -0.64 52.48 16 9 O -0.97 -20.58 16.85 -57.17 -0.96 -21.55 16 10 O -0.97 -21.19 16.84 -57.17 -0.96 -22.15 16 11 C -0.63 -14.01 5.97 -39.66 -0.24 -14.25 16 12 C -0.15 -3.20 9.53 -39.29 -0.37 -3.57 16 13 C -0.12 -2.73 10.02 -39.67 -0.40 -3.13 16 14 C -0.12 -2.92 8.70 -38.88 -0.34 -3.26 16 15 C 0.09 2.38 5.58 -106.83 -0.60 1.78 16 16 C -0.46 -11.83 9.05 -37.74 -0.34 -12.18 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 18 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.79 -19.86 10.95 55.55 0.61 -19.25 16 20 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 24 C -0.13 -3.04 9.26 -38.88 -0.36 -3.40 16 25 C 0.13 1.70 5.92 -2.41 -0.01 1.68 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.44 6.66 -51.93 -0.35 0.09 16 28 H 0.06 0.40 7.32 -51.93 -0.38 0.02 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 34 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 2.08 7.60 -52.48 -0.40 1.68 16 39 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 41 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 42 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 43 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 44 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -30.10 364.40 -11.15 -41.25 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.78 Total: 4.87 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: -2.47 Total: -38.19 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.20 Total: -35.22 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -1.93 Total: -43.70 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.64 Total: 52.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.10 -11.15 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.143 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds