Wall clock time and date at job start Tue Mar 31 2020 13:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 C 1.52991 * 109.47280 * 185.35609 * 3 2 1 5 5 C 1.53000 * 115.55009 * 293.33022 * 4 3 2 6 6 N 1.46502 * 109.46927 * 280.10209 * 5 4 3 7 7 S 1.65600 * 119.99907 * 164.21310 * 6 5 4 8 8 O 1.42097 * 106.40450 * 311.46123 * 7 6 5 9 9 O 1.42104 * 106.39952 * 178.53878 * 7 6 5 10 10 C 1.76202 * 107.21718 * 65.00468 * 7 6 5 11 11 C 1.38662 * 119.87501 * 269.97853 * 10 7 6 12 12 C 1.38609 * 120.49975 * 180.02562 * 11 10 7 13 13 C 1.37629 * 120.25090 * 359.97438 * 12 11 10 14 14 C 1.40696 * 119.74781 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.25037 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99646 * 333.02473 * 15 14 13 17 17 C 1.39950 * 120.00195 * 153.01348 * 15 14 13 18 18 N 1.30815 * 119.99939 * 347.27895 * 17 15 14 19 19 Si 1.86802 * 119.99623 * 167.27641 * 17 15 14 20 20 H 1.48499 * 109.46935 * 90.00377 * 19 17 15 21 21 H 1.48505 * 109.46854 * 210.00072 * 19 17 15 22 22 H 1.48496 * 109.47276 * 330.00304 * 19 17 15 23 23 C 1.37599 * 119.87861 * 89.99494 * 10 7 6 24 24 C 1.53003 * 117.51801 * 79.02591 * 4 3 2 25 25 C 1.52999 * 60.00149 * 107.48567 * 24 4 3 26 26 H 1.08998 * 109.47377 * 59.99667 * 1 2 3 27 27 H 1.09004 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46765 * 299.99979 * 1 2 3 29 29 H 1.08996 * 109.46992 * 239.99960 * 2 1 3 30 30 H 1.08996 * 109.47420 * 119.99785 * 2 1 3 31 31 H 1.08999 * 109.47065 * 65.35301 * 3 2 1 32 32 H 1.09005 * 109.46653 * 305.35698 * 3 2 1 33 33 H 1.09002 * 109.47560 * 160.10359 * 5 4 3 34 34 H 1.09001 * 109.47228 * 40.10061 * 5 4 3 35 35 H 0.97005 * 119.99841 * 344.21890 * 6 5 4 36 36 H 1.08001 * 119.74285 * 359.97438 * 11 10 7 37 37 H 1.08005 * 119.87321 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.12928 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00153 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.12566 * 0.25694 * 23 10 7 41 41 H 1.08999 * 117.50123 * 214.97136 * 24 4 3 42 42 H 1.09000 * 117.50257 * 359.97438 * 24 4 3 43 43 H 1.09006 * 117.49725 * 252.51631 * 25 24 4 44 44 H 1.08996 * 117.52153 * 107.47678 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4447 -0.1346 5 6 4.3321 0.8597 1.0523 6 7 4.4170 1.8597 2.1196 7 16 4.8372 1.3995 3.6538 8 8 4.0261 0.2771 3.9724 9 8 4.8640 2.5860 4.4354 10 6 6.4967 0.8110 3.5858 11 6 6.7441 -0.5304 3.3367 12 6 8.0444 -1.0074 3.2809 13 6 9.1055 -0.1520 3.4721 14 6 8.8665 1.2112 3.7255 15 6 9.9487 2.0995 3.9229 16 1 10.8871 1.7298 4.3090 17 6 9.8039 3.4576 3.6177 18 7 8.7720 3.8659 2.9251 19 14 11.0842 4.6872 4.1996 20 1 12.1440 4.8235 3.1684 21 1 10.4385 6.0057 4.4231 22 1 11.6877 4.2098 5.4696 23 6 7.5421 1.6842 3.7802 24 6 4.1506 1.2289 -1.5312 25 6 4.2055 2.6142 -0.8841 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7571 1.9279 0.9340 32 1 1.6004 1.9832 -0.8382 33 1 5.3370 0.5822 0.7337 34 1 3.8114 -0.0234 1.4224 35 1 4.2270 2.7914 1.9275 36 1 5.9174 -1.2088 3.1860 37 1 8.2255 -2.0543 3.0867 38 1 10.1179 -0.5257 3.4277 39 1 8.6714 4.8073 2.7139 40 1 7.3471 2.7278 3.9784 41 1 5.0837 0.6704 -1.6044 42 1 3.4507 1.0850 -2.3544 43 1 3.5415 3.3820 -1.2815 44 1 5.1744 2.9673 -0.5312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:06 Heat of formation + Delta-G solvation = -56.320927 kcal Electronic energy + Delta-G solvation = -25615.653804 eV Core-core repulsion = 22045.444071 eV Total energy + Delta-G solvation = -3570.209732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.86215 -37.63486 -36.51886 -35.17748 -34.10458 -33.80814 -33.59499 -30.25165 -29.58594 -27.64182 -25.78990 -25.45951 -22.68067 -21.79642 -21.56664 -21.14749 -19.20013 -18.78501 -17.83560 -16.88515 -16.22832 -15.90884 -15.38380 -15.12289 -14.99695 -14.74960 -14.37757 -13.93485 -13.52474 -13.37727 -13.30226 -12.85482 -12.74006 -12.68727 -12.12590 -11.90088 -11.70379 -11.49647 -11.48646 -11.40874 -11.33996 -11.31222 -11.17486 -11.09591 -10.88386 -10.79398 -10.68859 -10.62855 -10.11873 -9.90860 -9.76598 -9.56915 -9.38771 -8.97893 -8.11250 -7.60599 -6.90459 -4.54245 1.16091 2.19017 2.70214 3.01750 3.04288 3.08633 3.51839 3.84080 3.90798 4.30901 4.50200 4.57690 4.69413 4.81191 4.91829 5.10487 5.15690 5.21358 5.33919 5.38320 5.58713 5.62371 5.67595 5.75908 5.79791 5.89021 5.92793 5.94627 6.01938 6.15727 6.20584 6.23337 6.25268 6.29154 6.31900 6.49589 6.84570 6.86177 7.08570 7.21826 7.37671 7.46725 7.63462 7.77826 8.00398 8.33367 8.67938 8.71212 10.05852 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003913 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.966499 B = 7154.750156 C = 7645.757318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.080 4.080 4 C -0.132 4.132 5 C 0.158 3.842 6 N -1.115 6.115 7 S 2.690 3.310 8 O -0.979 6.979 9 O -0.971 6.971 10 C -0.644 4.644 11 C -0.157 4.157 12 C -0.108 4.108 13 C -0.184 4.184 14 C 0.089 3.911 15 C -0.459 4.459 16 H 0.081 0.919 17 C 0.072 3.928 18 N -0.798 5.798 19 Si 0.914 3.086 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.051 4.051 24 C -0.166 4.166 25 C -0.171 4.171 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.414 0.586 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.285 0.715 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -2.210 -8.577 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.118 4.118 4 C -0.134 4.134 5 C 0.032 3.968 6 N -0.873 5.873 7 S 2.786 3.214 8 O -0.969 6.969 9 O -0.961 6.961 10 C -0.736 4.736 11 C -0.178 4.178 12 C -0.128 4.128 13 C -0.204 4.204 14 C 0.086 3.914 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.423 5.423 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.072 4.072 24 C -0.203 4.203 25 C -0.208 4.208 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.157 0.843 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.492 -2.131 -7.898 13.304 hybrid contribution 1.302 0.817 -0.335 1.573 sum -9.190 -1.314 -8.233 12.409 Atomic orbital electron populations 1.21774 0.96100 1.01495 1.01552 1.21541 0.95443 0.96842 1.02577 1.21127 0.91400 0.97116 1.02147 1.21635 0.95036 1.03955 0.92772 1.20723 0.99516 0.90459 0.86149 1.55476 1.86662 1.17565 1.27606 1.01585 0.74746 0.73119 0.71979 1.93496 1.67689 1.53422 1.82299 1.93545 1.87924 1.47952 1.66721 1.29957 1.20924 1.03104 1.19575 1.20034 0.96491 0.92778 1.08478 1.20628 0.93095 0.97694 1.01359 1.21255 0.97008 0.94836 1.07350 1.17709 0.92725 0.91634 0.89332 1.19594 0.99089 0.92020 1.38152 0.90051 1.25942 0.96498 0.99523 0.92605 1.69689 1.27368 1.18077 1.27209 0.86202 0.80473 0.79252 0.80227 1.19426 1.19842 1.18398 1.21303 0.91428 0.98758 0.95689 1.23020 1.02689 0.99969 0.94659 1.23063 1.02913 0.91406 1.03453 0.93077 0.92839 0.92743 0.91896 0.91325 0.91258 0.91952 0.91388 0.90027 0.75186 0.87665 0.88474 0.88284 0.90391 0.84289 0.88457 0.88795 0.88848 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.13 -1.26 5.71 -26.73 -0.15 -1.41 16 3 C -0.08 -0.83 5.10 -26.73 -0.14 -0.97 16 4 C -0.13 -1.51 1.57 -154.51 -0.24 -1.75 16 5 C 0.16 2.22 6.09 -4.04 -0.02 2.20 16 6 N -1.11 -17.73 5.97 -10.61 -0.06 -17.79 16 7 S 2.69 53.99 5.73 -107.50 -0.62 53.38 16 8 O -0.98 -20.68 16.73 -57.17 -0.96 -21.64 16 9 O -0.97 -22.16 17.26 -57.17 -0.99 -23.15 16 10 C -0.64 -14.64 5.94 -39.66 -0.24 -14.87 16 11 C -0.16 -3.39 9.53 -39.29 -0.37 -3.76 16 12 C -0.11 -2.33 10.02 -39.67 -0.40 -2.72 16 13 C -0.18 -4.31 9.80 -38.88 -0.38 -4.69 16 14 C 0.09 2.31 5.56 -106.83 -0.59 1.72 16 15 C -0.46 -11.74 9.07 -37.74 -0.34 -12.08 16 16 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 17 C 0.07 1.75 5.23 -17.34 -0.09 1.66 16 18 N -0.80 -19.86 10.83 55.55 0.60 -19.26 16 19 Si 0.91 18.26 29.58 -169.99 -5.03 13.23 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 C -0.05 -1.29 8.13 -38.87 -0.32 -1.61 16 24 C -0.17 -1.69 9.90 -26.73 -0.26 -1.96 16 25 C -0.17 -1.88 9.72 -26.73 -0.26 -2.14 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.77 7.03 -51.93 -0.36 0.40 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.07 1.00 7.95 -51.93 -0.41 0.58 16 34 H 0.08 1.14 6.40 -51.93 -0.33 0.81 16 35 H 0.41 5.91 8.49 -34.47 -0.29 5.62 16 36 H 0.11 2.05 7.60 -52.49 -0.40 1.65 16 37 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 39 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 40 H 0.14 3.71 5.71 -52.49 -0.30 3.41 16 41 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -29.76 375.46 -11.55 -41.31 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.72 Total: 11.64 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: -3.44 Total: -43.37 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.54 Total: -37.05 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.94 Total: -44.79 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 53.99 SS G_CDS: -0.62 Total: 53.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.76 -11.55 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.013 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds