Wall clock time and date at job start Tue Mar 31 2020 13:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 C 1.52991 * 109.47280 * 185.35609 * 3 2 1 5 5 C 1.53000 * 115.55009 * 293.33022 * 4 3 2 6 6 N 1.46502 * 109.46927 * 280.10209 * 5 4 3 7 7 S 1.65600 * 119.99907 * 164.21310 * 6 5 4 8 8 O 1.42097 * 106.40450 * 311.46123 * 7 6 5 9 9 O 1.42104 * 106.39952 * 178.53878 * 7 6 5 10 10 C 1.76202 * 107.21718 * 65.00468 * 7 6 5 11 11 C 1.38662 * 119.87501 * 269.97853 * 10 7 6 12 12 C 1.38609 * 120.49975 * 180.02562 * 11 10 7 13 13 C 1.37629 * 120.25090 * 359.97438 * 12 11 10 14 14 C 1.40696 * 119.74781 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.25037 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99646 * 333.02473 * 15 14 13 17 17 C 1.39950 * 120.00195 * 153.01348 * 15 14 13 18 18 N 1.30815 * 119.99939 * 347.27895 * 17 15 14 19 19 Si 1.86802 * 119.99623 * 167.27641 * 17 15 14 20 20 H 1.48499 * 109.46935 * 90.00377 * 19 17 15 21 21 H 1.48505 * 109.46854 * 210.00072 * 19 17 15 22 22 H 1.48496 * 109.47276 * 330.00304 * 19 17 15 23 23 C 1.37599 * 119.87861 * 89.99494 * 10 7 6 24 24 C 1.53003 * 117.51801 * 79.02591 * 4 3 2 25 25 C 1.52999 * 60.00149 * 107.48567 * 24 4 3 26 26 H 1.08998 * 109.47377 * 59.99667 * 1 2 3 27 27 H 1.09004 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46765 * 299.99979 * 1 2 3 29 29 H 1.08996 * 109.46992 * 239.99960 * 2 1 3 30 30 H 1.08996 * 109.47420 * 119.99785 * 2 1 3 31 31 H 1.08999 * 109.47065 * 65.35301 * 3 2 1 32 32 H 1.09005 * 109.46653 * 305.35698 * 3 2 1 33 33 H 1.09002 * 109.47560 * 160.10359 * 5 4 3 34 34 H 1.09001 * 109.47228 * 40.10061 * 5 4 3 35 35 H 0.97005 * 119.99841 * 344.21890 * 6 5 4 36 36 H 1.08001 * 119.74285 * 359.97438 * 11 10 7 37 37 H 1.08005 * 119.87321 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.12928 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00153 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.12566 * 0.25694 * 23 10 7 41 41 H 1.08999 * 117.50123 * 214.97136 * 24 4 3 42 42 H 1.09000 * 117.50257 * 359.97438 * 24 4 3 43 43 H 1.09006 * 117.49725 * 252.51631 * 25 24 4 44 44 H 1.08996 * 117.52153 * 107.47678 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4447 -0.1346 5 6 4.3321 0.8597 1.0523 6 7 4.4170 1.8597 2.1196 7 16 4.8372 1.3995 3.6538 8 8 4.0261 0.2771 3.9724 9 8 4.8640 2.5860 4.4354 10 6 6.4967 0.8110 3.5858 11 6 6.7441 -0.5304 3.3367 12 6 8.0444 -1.0074 3.2809 13 6 9.1055 -0.1520 3.4721 14 6 8.8665 1.2112 3.7255 15 6 9.9487 2.0995 3.9229 16 1 10.8871 1.7298 4.3090 17 6 9.8039 3.4576 3.6177 18 7 8.7720 3.8659 2.9251 19 14 11.0842 4.6872 4.1996 20 1 12.1440 4.8235 3.1684 21 1 10.4385 6.0057 4.4231 22 1 11.6877 4.2098 5.4696 23 6 7.5421 1.6842 3.7802 24 6 4.1506 1.2289 -1.5312 25 6 4.2055 2.6142 -0.8841 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7571 1.9279 0.9340 32 1 1.6004 1.9832 -0.8382 33 1 5.3370 0.5822 0.7337 34 1 3.8114 -0.0234 1.4224 35 1 4.2270 2.7914 1.9275 36 1 5.9174 -1.2088 3.1860 37 1 8.2255 -2.0543 3.0867 38 1 10.1179 -0.5257 3.4277 39 1 8.6714 4.8073 2.7139 40 1 7.3471 2.7278 3.9784 41 1 5.0837 0.6704 -1.6044 42 1 3.4507 1.0850 -2.3544 43 1 3.5415 3.3820 -1.2815 44 1 5.1744 2.9673 -0.5312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:06 Heat of formation + Delta-G solvation = -73.501049 kcal Electronic energy + Delta-G solvation = -25616.398790 eV Core-core repulsion = 22045.444071 eV Total energy + Delta-G solvation = -3570.954718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.80165 -39.43572 -38.23949 -36.90903 -35.62938 -35.21551 -34.51315 -32.07328 -31.39365 -28.48279 -27.35064 -26.85840 -23.62897 -23.45431 -22.96172 -22.35774 -20.48147 -20.10664 -19.57500 -18.41020 -17.92406 -17.27873 -16.76967 -16.56934 -16.32467 -16.16923 -15.66598 -15.24501 -15.00806 -14.90098 -14.41000 -14.33202 -13.91013 -13.77047 -13.69125 -13.25172 -13.14486 -13.03460 -12.97291 -12.88579 -12.85674 -12.84483 -12.61176 -12.31789 -12.26450 -12.13032 -11.79933 -11.67532 -11.48020 -11.32774 -11.16774 -10.96679 -10.65826 -10.36257 -9.91402 -9.45302 -8.70707 -6.45268 -0.46854 0.38074 0.91549 1.36935 1.45253 1.51401 2.10523 2.17623 2.55868 2.79086 2.91491 3.47172 3.51985 3.69847 3.81474 3.90616 4.08766 4.32105 4.34603 4.40934 4.46462 4.51914 4.57937 4.69476 4.71535 4.84888 4.87565 5.00216 5.01151 5.02956 5.07614 5.10968 5.14254 5.18751 5.24214 5.33204 5.39026 5.41986 5.47520 5.54122 5.61651 5.81677 5.93789 6.10077 6.19063 6.45942 6.81978 6.85000 8.27636 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003913 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.966499 B = 7154.750156 C = 7645.757318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.078 4.078 4 C -0.137 4.137 5 C 0.150 3.850 6 N -1.101 6.101 7 S 2.714 3.286 8 O -0.986 6.986 9 O -1.001 7.001 10 C -0.652 4.652 11 C -0.155 4.155 12 C -0.108 4.108 13 C -0.193 4.193 14 C 0.058 3.942 15 C -0.495 4.495 16 H 0.082 0.918 17 C 0.031 3.969 18 N -0.827 5.827 19 Si 0.983 3.017 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.083 4.083 24 C -0.152 4.152 25 C -0.175 4.175 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.423 0.577 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.291 0.709 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -2.833 -10.047 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.115 4.115 4 C -0.139 4.139 5 C 0.025 3.975 6 N -0.863 5.863 7 S 2.808 3.192 8 O -0.976 6.976 9 O -0.992 6.992 10 C -0.741 4.741 11 C -0.176 4.176 12 C -0.126 4.126 13 C -0.213 4.213 14 C 0.054 3.946 15 C -0.524 4.524 16 H 0.101 0.899 17 C -0.184 4.184 18 N -0.453 5.453 19 Si 0.804 3.196 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.183 1.183 23 C -0.104 4.104 24 C -0.189 4.189 25 C -0.212 4.212 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.259 0.741 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.210 -2.775 -9.368 14.871 hybrid contribution 1.441 0.881 0.056 1.690 sum -9.769 -1.895 -9.313 13.629 Atomic orbital electron populations 1.21767 0.95205 1.01965 1.01888 1.21543 0.96258 0.96451 1.02203 1.21133 0.90426 0.97550 1.02420 1.21566 0.95496 1.04543 0.92274 1.20923 0.99740 0.90293 0.86577 1.55165 1.85768 1.18589 1.26759 1.00824 0.73604 0.72239 0.72557 1.93479 1.67250 1.53817 1.83077 1.93497 1.88001 1.49059 1.68612 1.30334 1.21867 1.03533 1.18405 1.20469 0.97631 0.92643 1.06825 1.21060 0.92376 0.99419 0.99781 1.21543 0.98488 0.94309 1.06965 1.18095 0.93160 0.93059 0.90240 1.19859 0.99385 0.93299 1.39892 0.89939 1.26782 0.98524 1.00872 0.92218 1.69755 1.28889 1.18726 1.27890 0.85176 0.77978 0.76718 0.79760 1.18291 1.19257 1.18300 1.21134 0.92284 0.98377 0.98572 1.23106 1.02774 0.98851 0.94212 1.23084 1.02310 0.92189 1.03663 0.91853 0.92353 0.93304 0.90947 0.93020 0.92270 0.90121 0.92140 0.89726 0.74135 0.85162 0.84511 0.86913 0.89843 0.86461 0.88865 0.86532 0.87105 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.13 -2.27 5.71 30.60 0.17 -2.10 16 3 C -0.08 -1.45 5.10 30.59 0.16 -1.29 16 4 C -0.14 -2.90 1.57 -52.18 -0.08 -2.99 16 5 C 0.15 4.11 6.09 86.38 0.53 4.63 16 6 N -1.10 -34.93 5.97 -187.48 -1.12 -36.05 16 7 S 2.71 109.70 5.73 -56.49 -0.32 109.38 16 8 O -0.99 -41.01 16.73 -128.00 -2.14 -43.15 16 9 O -1.00 -46.87 17.26 -128.00 -2.21 -49.08 16 10 C -0.65 -29.95 5.94 22.22 0.13 -29.81 16 11 C -0.15 -6.53 9.53 22.46 0.21 -6.31 16 12 C -0.11 -4.44 10.02 22.21 0.22 -4.22 16 13 C -0.19 -9.02 9.80 22.73 0.22 -8.80 16 14 C 0.06 3.06 5.56 -21.29 -0.12 2.94 16 15 C -0.49 -26.12 9.07 23.46 0.21 -25.91 16 16 H 0.08 4.14 7.88 -2.91 -0.02 4.11 16 17 C 0.03 1.53 5.23 85.26 0.45 1.98 16 18 N -0.83 -42.53 10.83 21.83 0.24 -42.30 16 19 Si 0.98 37.91 29.58 68.60 2.03 39.94 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 C -0.08 -4.35 8.13 22.73 0.18 -4.17 16 24 C -0.15 -2.75 9.90 30.59 0.30 -2.45 16 25 C -0.18 -3.58 9.72 30.60 0.30 -3.29 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.09 7.03 -2.39 -0.02 1.07 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.22 8.08 -2.38 -0.02 1.20 16 33 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 34 H 0.08 2.27 6.40 -2.39 -0.02 2.26 16 35 H 0.42 12.10 8.49 -96.74 -0.82 11.28 16 36 H 0.13 4.79 7.60 -2.91 -0.02 4.76 16 37 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 40 H 0.12 6.60 5.71 -2.91 -0.02 6.59 16 41 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 42 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.11 1.87 8.14 -2.38 -0.02 1.86 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.02 375.46 0.25 -64.77 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: 0.18 Total: 39.89 kcal Atomic # 6 Polarization: -87.00 SS G_CDS: 3.60 Total: -83.40 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -0.88 Total: -78.35 kcal Atomic # 8 Polarization: -87.88 SS G_CDS: -4.35 Total: -92.23 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 16 Polarization: 109.70 SS G_CDS: -0.32 Total: 109.38 kcal Total: -65.02 0.25 -64.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.729 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds