Wall clock time and date at job start Tue Mar 31 2020 14:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46664 * 2 1 4 4 C 1.52997 * 109.47327 * 119.99254 * 2 1 3 5 5 N 1.46502 * 109.46934 * 60.21335 * 4 2 1 6 6 C 1.46497 * 120.00102 * 271.68332 * 5 4 2 7 7 C 1.52996 * 117.50000 * 0.43135 * 6 5 4 8 8 C 1.53003 * 117.50041 * 291.76847 * 6 5 4 9 9 S 1.65605 * 119.99895 * 91.68104 * 5 4 2 10 10 O 1.42102 * 106.40191 * 345.31431 * 9 5 4 11 11 O 1.42104 * 106.40088 * 212.39334 * 9 5 4 12 12 C 1.76198 * 107.21669 * 98.85482 * 9 5 4 13 13 C 1.37635 * 120.12779 * 112.91625 * 12 9 5 14 14 C 1.38614 * 120.24644 * 179.97438 * 13 12 9 15 15 C 1.38657 * 120.50491 * 359.97438 * 14 13 12 16 16 C 1.37596 * 120.24623 * 359.97438 * 15 14 13 17 17 C 1.40701 * 120.12653 * 293.16343 * 12 9 5 18 18 C 1.41397 * 120.24673 * 0.02825 * 17 12 9 19 19 H 1.08003 * 119.99984 * 322.81610 * 18 17 12 20 20 C 1.39938 * 119.99911 * 142.81197 * 18 17 12 21 21 N 1.30821 * 120.00315 * 357.34487 * 20 18 17 22 22 Si 1.86809 * 119.99961 * 177.34384 * 20 18 17 23 23 H 1.48495 * 109.47266 * 89.99945 * 22 20 18 24 24 H 1.48494 * 109.47085 * 210.00188 * 22 20 18 25 25 H 1.48497 * 109.46885 * 330.00196 * 22 20 18 26 26 H 1.08996 * 109.47565 * 63.42858 * 1 2 3 27 27 H 1.09003 * 109.47038 * 183.42833 * 1 2 3 28 28 H 1.09005 * 109.47228 * 303.42451 * 1 2 3 29 29 H 1.08992 * 109.47127 * 240.00151 * 2 1 3 30 30 H 1.09003 * 109.46781 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46718 * 299.99312 * 3 2 1 32 32 H 1.08992 * 109.47598 * 59.99817 * 3 2 1 33 33 H 1.08999 * 109.47200 * 300.21998 * 4 2 1 34 34 H 1.08995 * 109.47443 * 180.21311 * 4 2 1 35 35 H 1.09003 * 115.54789 * 146.10270 * 6 5 4 36 36 H 1.09001 * 117.49738 * 359.97438 * 7 6 5 37 37 H 1.09001 * 117.49771 * 145.02253 * 7 6 5 38 38 H 1.08993 * 117.50120 * 214.98315 * 8 6 5 39 39 H 1.09007 * 117.49354 * 359.97438 * 8 6 5 40 40 H 1.07999 * 119.87559 * 359.96879 * 13 12 9 41 41 H 1.08002 * 119.74951 * 180.02562 * 14 13 12 42 42 H 1.07995 * 119.87810 * 180.02562 * 15 14 13 43 43 H 1.07998 * 120.12996 * 179.97438 * 16 15 14 44 44 H 0.97001 * 119.99862 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.5559 -2.1038 1.2469 6 6 0.2587 -2.4267 1.8461 7 6 -0.5474 -1.2746 2.4491 8 6 0.1301 -2.2968 3.3651 9 16 2.4751 -3.3017 0.5667 10 8 3.4693 -2.6510 -0.2126 11 8 1.5638 -4.2505 0.0293 12 6 3.3247 -4.1155 1.8784 13 6 3.0220 -5.4209 2.1926 14 6 3.6893 -6.0636 3.2237 15 6 4.6678 -5.4015 3.9493 16 6 4.9876 -4.0967 3.6520 17 6 4.3115 -3.4317 2.6121 18 6 4.6268 -2.0886 2.3021 19 1 4.6329 -1.7589 1.2737 20 6 4.9309 -1.1866 3.3280 21 7 4.8728 -1.5723 4.5767 22 14 5.4197 0.5682 2.9142 23 1 4.2053 1.4211 2.8619 24 1 6.3423 1.0841 3.9573 25 1 6.1002 0.5944 1.5946 26 1 -0.3634 0.4597 -0.9191 27 1 -0.3633 -1.0259 0.0615 28 1 -0.3634 0.5661 0.8577 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6735 -0.2094 2.1392 34 1 3.1300 -0.7178 1.2512 35 1 -0.2965 -3.2296 1.3608 36 1 -0.1124 -0.2764 2.4003 37 1 -1.6329 -1.3197 2.3609 38 1 -0.5098 -3.0139 3.8792 39 1 1.0110 -1.9715 3.9187 40 1 2.2618 -5.9463 1.6338 41 1 3.4456 -7.0882 3.4631 42 1 5.1816 -5.9122 4.7503 43 1 5.7498 -3.5826 4.2187 44 1 5.0839 -0.9471 5.2877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:57 Heat of formation + Delta-G solvation = -33.743588 kcal Electronic energy + Delta-G solvation = -27608.541830 eV Core-core repulsion = 24039.311124 eV Total energy + Delta-G solvation = -3569.230705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.48400 -37.61030 -36.43270 -35.06692 -34.79307 -33.84937 -31.83156 -30.21611 -29.58960 -26.99067 -25.92686 -25.25585 -22.10570 -21.77924 -21.21202 -21.02240 -19.91201 -17.95412 -17.58485 -17.24590 -16.05602 -15.94963 -15.47029 -14.75947 -14.50153 -14.31250 -14.08190 -13.70830 -13.33572 -13.20263 -12.90673 -12.74274 -12.34140 -12.08758 -11.92388 -11.64550 -11.46470 -11.39397 -11.27726 -11.27074 -11.19408 -11.14594 -11.12313 -10.97827 -10.91056 -10.62303 -10.54684 -10.16064 -9.99644 -9.86156 -9.81137 -9.48373 -9.18314 -8.19220 -7.99285 -7.52113 -6.99272 -4.79341 1.47450 2.31226 2.70083 2.94559 3.01285 3.04194 3.75500 3.77975 4.16358 4.40859 4.71208 5.07291 5.12392 5.22018 5.24499 5.30252 5.34716 5.44409 5.55653 5.63215 5.83267 5.86868 5.98633 6.01169 6.02421 6.08446 6.21288 6.23323 6.26791 6.34937 6.36077 6.44392 6.47482 6.62263 6.69038 6.79585 6.83049 6.96808 7.03900 7.28990 7.33559 7.49295 7.70370 7.77418 7.93586 8.34898 8.54643 8.63459 9.95625 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.008515 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.824358 B = 3287.339177 C = 4579.484217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.144 4.144 4 C 0.121 3.879 5 N -0.959 5.959 6 C 0.088 3.912 7 C -0.183 4.183 8 C -0.193 4.193 9 S 2.707 3.293 10 O -0.969 6.969 11 O -0.996 6.996 12 C -0.764 4.764 13 C -0.007 4.007 14 C -0.240 4.240 15 C -0.078 4.078 16 C -0.150 4.150 17 C 0.199 3.801 18 C -0.489 4.489 19 H 0.117 0.883 20 C 0.083 3.917 21 N -0.790 5.790 22 Si 0.895 3.105 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.252 1.252 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 4.603 -1.257 8.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C -0.202 4.202 4 C -0.004 4.004 5 N -0.791 5.791 6 C -0.019 4.019 7 C -0.222 4.222 8 C -0.233 4.233 9 S 2.806 3.194 10 O -0.960 6.960 11 O -0.987 6.987 12 C -0.859 4.859 13 C -0.027 4.027 14 C -0.261 4.261 15 C -0.097 4.097 16 C -0.170 4.170 17 C 0.195 3.805 18 C -0.519 4.519 19 H 0.134 0.866 20 C -0.136 4.136 21 N -0.414 5.414 22 Si 0.718 3.282 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.175 1.175 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.738 4.528 -1.953 8.350 hybrid contribution 0.464 0.571 1.025 1.262 sum -6.274 5.098 -0.927 8.138 Atomic orbital electron populations 1.22093 0.95404 1.02440 1.00692 1.21640 0.96256 0.96328 0.99910 1.21772 1.01412 0.95734 1.01324 1.21638 1.01370 0.80565 0.96863 1.56980 1.27749 1.19571 1.74797 1.21348 0.86515 1.00757 0.93294 1.23476 0.98615 0.95704 1.04406 1.23467 1.03336 1.02258 0.94218 1.00986 0.72486 0.71871 0.74062 1.93474 1.58908 1.75268 1.68327 1.93427 1.64970 1.62144 1.78140 1.30043 1.18739 1.07539 1.29533 1.20263 0.95528 0.92639 0.94268 1.20540 1.04244 0.99378 1.01905 1.20941 0.96266 0.95290 0.97166 1.21515 1.01596 0.92991 1.00913 1.17028 0.84809 0.91200 0.87487 1.20400 1.41280 0.93705 0.96466 0.86590 1.25895 0.91940 1.01455 0.94333 1.69759 1.34274 1.37190 1.00178 0.86481 0.80108 0.81251 0.80349 1.18319 1.19887 1.17481 0.93743 0.91536 0.92608 0.90705 0.92424 0.92747 0.92861 0.91026 0.87581 0.85212 0.87730 0.88675 0.88821 0.87816 0.87419 0.88628 0.88767 0.86067 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.55 37.16 0.28 -1.67 16 2 C -0.12 -1.86 3.16 -90.62 -0.29 -2.15 16 3 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 4 C 0.12 2.14 4.22 -4.04 -0.02 2.12 16 5 N -0.96 -17.89 2.87 -107.31 -0.31 -18.20 16 6 C 0.09 1.42 4.88 -67.93 -0.33 1.09 16 7 C -0.18 -2.39 7.46 -26.69 -0.20 -2.59 16 8 C -0.19 -2.95 10.41 -26.69 -0.28 -3.23 16 9 S 2.71 59.73 5.08 -107.50 -0.55 59.18 16 10 O -0.97 -23.16 14.52 -57.17 -0.83 -23.99 16 11 O -1.00 -22.73 16.04 -57.17 -0.92 -23.65 16 12 C -0.76 -18.19 5.97 -38.87 -0.23 -18.42 16 13 C -0.01 -0.16 9.53 -39.66 -0.38 -0.54 16 14 C -0.24 -5.21 10.05 -39.29 -0.39 -5.60 16 15 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 16 C -0.15 -3.67 8.62 -38.87 -0.34 -4.00 16 17 C 0.20 4.98 5.47 -106.82 -0.58 4.40 16 18 C -0.49 -11.90 6.19 -37.74 -0.23 -12.13 16 19 H 0.12 2.87 4.48 -52.48 -0.24 2.63 16 20 C 0.08 1.90 5.33 -17.35 -0.09 1.81 16 21 N -0.79 -18.42 11.07 55.55 0.61 -17.81 16 22 Si 0.90 17.25 28.79 -169.99 -4.89 12.35 16 23 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.25 -4.91 7.11 56.52 0.40 -4.50 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.91 5.56 -51.93 -0.29 0.62 16 28 H 0.05 0.65 6.24 -51.93 -0.32 0.33 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.18 6.21 -51.93 -0.32 0.86 16 34 H 0.11 2.11 3.63 -51.93 -0.19 1.92 16 35 H 0.13 2.02 7.62 -51.93 -0.40 1.63 16 36 H 0.10 1.36 4.42 -51.93 -0.23 1.13 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.11 2.26 7.32 -52.49 -0.38 1.88 16 41 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.12 3.00 6.63 -52.49 -0.35 2.65 16 44 H 0.28 6.07 8.30 -40.82 -0.34 5.73 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -27.44 349.43 -10.83 -38.27 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.08 Total: 13.21 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: -3.14 Total: -44.64 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.31 Total: -36.01 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.75 Total: -47.64 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -4.89 Total: 12.35 kcal Atomic # 16 Polarization: 59.73 SS G_CDS: -0.55 Total: 59.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.44 -10.83 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.530 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds