Wall clock time and date at job start Tue Mar 31 2020 14:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46664 * 2 1 4 4 C 1.52997 * 109.47327 * 119.99254 * 2 1 3 5 5 N 1.46502 * 109.46934 * 60.21335 * 4 2 1 6 6 C 1.46497 * 120.00102 * 271.68332 * 5 4 2 7 7 C 1.52996 * 117.50000 * 0.43135 * 6 5 4 8 8 C 1.53003 * 117.50041 * 291.76847 * 6 5 4 9 9 S 1.65605 * 119.99895 * 91.68104 * 5 4 2 10 10 O 1.42102 * 106.40191 * 345.31431 * 9 5 4 11 11 O 1.42104 * 106.40088 * 212.39334 * 9 5 4 12 12 C 1.76198 * 107.21669 * 98.85482 * 9 5 4 13 13 C 1.37635 * 120.12779 * 112.91625 * 12 9 5 14 14 C 1.38614 * 120.24644 * 179.97438 * 13 12 9 15 15 C 1.38657 * 120.50491 * 359.97438 * 14 13 12 16 16 C 1.37596 * 120.24623 * 359.97438 * 15 14 13 17 17 C 1.40701 * 120.12653 * 293.16343 * 12 9 5 18 18 C 1.41397 * 120.24673 * 0.02825 * 17 12 9 19 19 H 1.08003 * 119.99984 * 322.81610 * 18 17 12 20 20 C 1.39938 * 119.99911 * 142.81197 * 18 17 12 21 21 N 1.30821 * 120.00315 * 357.34487 * 20 18 17 22 22 Si 1.86809 * 119.99961 * 177.34384 * 20 18 17 23 23 H 1.48495 * 109.47266 * 89.99945 * 22 20 18 24 24 H 1.48494 * 109.47085 * 210.00188 * 22 20 18 25 25 H 1.48497 * 109.46885 * 330.00196 * 22 20 18 26 26 H 1.08996 * 109.47565 * 63.42858 * 1 2 3 27 27 H 1.09003 * 109.47038 * 183.42833 * 1 2 3 28 28 H 1.09005 * 109.47228 * 303.42451 * 1 2 3 29 29 H 1.08992 * 109.47127 * 240.00151 * 2 1 3 30 30 H 1.09003 * 109.46781 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46718 * 299.99312 * 3 2 1 32 32 H 1.08992 * 109.47598 * 59.99817 * 3 2 1 33 33 H 1.08999 * 109.47200 * 300.21998 * 4 2 1 34 34 H 1.08995 * 109.47443 * 180.21311 * 4 2 1 35 35 H 1.09003 * 115.54789 * 146.10270 * 6 5 4 36 36 H 1.09001 * 117.49738 * 359.97438 * 7 6 5 37 37 H 1.09001 * 117.49771 * 145.02253 * 7 6 5 38 38 H 1.08993 * 117.50120 * 214.98315 * 8 6 5 39 39 H 1.09007 * 117.49354 * 359.97438 * 8 6 5 40 40 H 1.07999 * 119.87559 * 359.96879 * 13 12 9 41 41 H 1.08002 * 119.74951 * 180.02562 * 14 13 12 42 42 H 1.07995 * 119.87810 * 180.02562 * 15 14 13 43 43 H 1.07998 * 120.12996 * 179.97438 * 16 15 14 44 44 H 0.97001 * 119.99862 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.5559 -2.1038 1.2469 6 6 0.2587 -2.4267 1.8461 7 6 -0.5474 -1.2746 2.4491 8 6 0.1301 -2.2968 3.3651 9 16 2.4751 -3.3017 0.5667 10 8 3.4693 -2.6510 -0.2126 11 8 1.5638 -4.2505 0.0293 12 6 3.3247 -4.1155 1.8784 13 6 3.0220 -5.4209 2.1926 14 6 3.6893 -6.0636 3.2237 15 6 4.6678 -5.4015 3.9493 16 6 4.9876 -4.0967 3.6520 17 6 4.3115 -3.4317 2.6121 18 6 4.6268 -2.0886 2.3021 19 1 4.6329 -1.7589 1.2737 20 6 4.9309 -1.1866 3.3280 21 7 4.8728 -1.5723 4.5767 22 14 5.4197 0.5682 2.9142 23 1 4.2053 1.4211 2.8619 24 1 6.3423 1.0841 3.9573 25 1 6.1002 0.5944 1.5946 26 1 -0.3634 0.4597 -0.9191 27 1 -0.3633 -1.0259 0.0615 28 1 -0.3634 0.5661 0.8577 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6735 -0.2094 2.1392 34 1 3.1300 -0.7178 1.2512 35 1 -0.2965 -3.2296 1.3608 36 1 -0.1124 -0.2764 2.4003 37 1 -1.6329 -1.3197 2.3609 38 1 -0.5098 -3.0139 3.8792 39 1 1.0110 -1.9715 3.9187 40 1 2.2618 -5.9463 1.6338 41 1 3.4456 -7.0882 3.4631 42 1 5.1816 -5.9122 4.7503 43 1 5.7498 -3.5826 4.2187 44 1 5.0839 -0.9471 5.2877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:57 Heat of formation + Delta-G solvation = -48.438808 kcal Electronic energy + Delta-G solvation = -27609.179062 eV Core-core repulsion = 24039.311124 eV Total energy + Delta-G solvation = -3569.867938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.76492 -39.37353 -38.19079 -36.72046 -36.16093 -35.60517 -33.17192 -31.99044 -31.38053 -28.03493 -27.50678 -26.76706 -23.53145 -23.21320 -22.95591 -22.41488 -21.19360 -19.63895 -19.26919 -18.78589 -17.70364 -17.47060 -17.14253 -16.22060 -16.10939 -15.78033 -15.35231 -15.13826 -14.99755 -14.82921 -14.44530 -14.15120 -13.85532 -13.47358 -13.34106 -13.05277 -13.02295 -12.98864 -12.91920 -12.83674 -12.80750 -12.60537 -12.44741 -12.31150 -12.22112 -12.18148 -12.01598 -11.65727 -11.42517 -11.20994 -11.16768 -11.02302 -10.94039 -9.86398 -9.48772 -9.33395 -8.72528 -6.61629 -0.20981 0.51753 0.96327 1.35810 1.43583 1.47945 2.15960 2.20925 2.65379 2.93254 3.01526 3.44394 3.66944 3.91011 4.01317 4.07707 4.14210 4.16335 4.28718 4.32520 4.34397 4.48485 4.69171 4.70520 4.80418 4.85865 4.90589 4.98674 5.02761 5.05566 5.15142 5.16334 5.22175 5.28190 5.30274 5.33719 5.41146 5.51263 5.53670 5.61257 5.68311 5.86777 5.95043 5.97468 6.14484 6.52314 6.75591 6.82604 8.24580 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.008515 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.824358 B = 3287.339177 C = 4579.484217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.144 4.144 4 C 0.116 3.884 5 N -0.953 5.953 6 C 0.061 3.939 7 C -0.146 4.146 8 C -0.202 4.202 9 S 2.718 3.282 10 O -0.995 6.995 11 O -1.008 7.008 12 C -0.783 4.783 13 C -0.021 4.021 14 C -0.241 4.241 15 C -0.077 4.077 16 C -0.178 4.178 17 C 0.173 3.827 18 C -0.505 4.505 19 H 0.104 0.896 20 C 0.057 3.943 21 N -0.812 5.812 22 Si 0.942 3.058 23 H -0.236 1.236 24 H -0.265 1.265 25 H -0.260 1.260 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 5.836 -0.823 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.202 4.202 4 C -0.008 4.008 5 N -0.787 5.787 6 C -0.046 4.046 7 C -0.185 4.185 8 C -0.241 4.241 9 S 2.816 3.184 10 O -0.986 6.986 11 O -0.998 6.998 12 C -0.876 4.876 13 C -0.041 4.041 14 C -0.261 4.261 15 C -0.095 4.095 16 C -0.197 4.197 17 C 0.169 3.831 18 C -0.534 4.534 19 H 0.122 0.878 20 C -0.161 4.161 21 N -0.437 5.437 22 Si 0.762 3.238 23 H -0.159 1.159 24 H -0.190 1.190 25 H -0.184 1.184 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.127 0.873 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.680 5.736 -1.506 10.512 hybrid contribution 1.046 0.108 0.915 1.394 sum -7.634 5.843 -0.591 9.632 Atomic orbital electron populations 1.22072 0.93256 1.02511 1.02443 1.21635 0.98125 0.96963 0.97519 1.21787 1.00678 0.94603 1.03093 1.21720 1.00160 0.80246 0.98709 1.56679 1.28171 1.19004 1.74885 1.21632 0.85984 1.03286 0.93709 1.23602 1.00073 0.94592 1.00214 1.23414 1.03089 1.04082 0.93516 1.00510 0.72155 0.71966 0.73752 1.93429 1.60179 1.75694 1.69297 1.93395 1.64973 1.62999 1.78473 1.30392 1.19053 1.08455 1.29733 1.20585 0.96079 0.92534 0.94918 1.20935 1.03313 1.00782 1.01032 1.21275 0.96130 0.94562 0.97565 1.21548 1.02252 0.94224 1.01715 1.17322 0.85549 0.91916 0.88299 1.20394 1.42635 0.94045 0.96350 0.87794 1.26485 0.91323 1.04396 0.93886 1.69794 1.34434 1.38558 1.00876 0.85787 0.80740 0.77605 0.79715 1.15893 1.18964 1.18410 0.92156 0.92299 0.90689 0.92915 0.93706 0.90684 0.91373 0.89840 0.90136 0.84838 0.87272 0.85230 0.87214 0.90819 0.86142 0.85300 0.85867 0.87259 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 7.55 71.98 0.54 -2.85 16 2 C -0.12 -3.60 3.16 -10.79 -0.03 -3.64 16 3 C -0.14 -3.56 9.19 71.98 0.66 -2.90 16 4 C 0.12 4.09 4.22 86.38 0.36 4.45 16 5 N -0.95 -35.61 2.87 -493.41 -1.42 -37.02 16 6 C 0.06 1.88 4.88 44.99 0.22 2.10 16 7 C -0.15 -3.36 7.46 30.62 0.23 -3.14 16 8 C -0.20 -5.90 10.41 30.62 0.32 -5.58 16 9 S 2.72 122.94 5.08 -56.49 -0.29 122.65 16 10 O -1.00 -49.57 14.52 -128.00 -1.86 -51.42 16 11 O -1.01 -46.53 16.04 -128.00 -2.05 -48.59 16 12 C -0.78 -38.23 5.97 22.73 0.14 -38.10 16 13 C -0.02 -0.97 9.53 22.22 0.21 -0.76 16 14 C -0.24 -10.18 10.05 22.46 0.23 -9.96 16 15 C -0.08 -3.37 10.02 22.22 0.22 -3.15 16 16 C -0.18 -8.88 8.62 22.73 0.20 -8.69 16 17 C 0.17 8.97 5.47 -21.29 -0.12 8.85 16 18 C -0.51 -25.48 6.19 23.46 0.15 -25.33 16 19 H 0.10 5.40 4.48 -2.91 -0.01 5.39 16 20 C 0.06 2.63 5.33 85.26 0.45 3.09 16 21 N -0.81 -38.56 11.07 21.82 0.24 -38.32 16 22 Si 0.94 35.23 28.79 68.60 1.97 37.21 16 23 H -0.24 -7.88 7.11 99.48 0.71 -7.17 16 24 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.47 5.56 -2.39 -0.01 1.45 16 28 H 0.07 1.45 6.24 -2.38 -0.01 1.43 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 2.66 6.21 -2.39 -0.01 2.65 16 34 H 0.08 3.28 3.63 -2.39 -0.01 3.27 16 35 H 0.13 4.01 7.62 -2.39 -0.02 3.99 16 36 H 0.11 2.44 4.42 -2.39 -0.01 2.43 16 37 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.12 5.04 7.32 -2.91 -0.02 5.02 16 41 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 43 H 0.11 5.61 6.63 -2.91 -0.02 5.59 16 44 H 0.29 12.55 8.30 -92.71 -0.77 11.78 16 Total: -1.00 -61.08 349.43 1.40 -59.68 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: 1.02 Total: 41.42 kcal Atomic # 6 Polarization: -89.38 SS G_CDS: 3.78 Total: -85.61 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.17 Total: -75.35 kcal Atomic # 8 Polarization: -96.10 SS G_CDS: -3.91 Total: -100.01 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 1.97 Total: 37.21 kcal Atomic # 16 Polarization: 122.94 SS G_CDS: -0.29 Total: 122.65 kcal Total: -61.08 1.40 -59.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.245 kcal (2) G-P(sol) polarization free energy of solvation -61.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds