Wall clock time and date at job start Tue Mar 31 2020 13:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 C 1.52994 * 109.47228 * 120.00458 * 2 1 3 5 5 C 1.52997 * 109.47337 * 62.56215 * 4 2 1 6 6 N 1.46496 * 115.54988 * 54.27620 * 5 4 2 7 7 S 1.65604 * 119.99774 * 63.87644 * 6 5 4 8 8 O 1.42092 * 106.40249 * 308.75885 * 7 6 5 9 9 O 1.42101 * 106.39997 * 175.83900 * 7 6 5 10 10 C 1.76202 * 107.21945 * 62.29961 * 7 6 5 11 11 C 1.38634 * 119.75011 * 85.55217 * 10 7 6 12 12 C 1.37618 * 120.24937 * 179.97438 * 11 10 7 13 13 C 1.40712 * 119.74519 * 0.02562 * 12 11 10 14 14 C 1.41389 * 120.24643 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00090 * 339.66823 * 14 13 12 16 16 C 1.39947 * 120.00386 * 159.66800 * 14 13 12 17 17 N 1.30818 * 119.99677 * 338.47439 * 16 14 13 18 18 Si 1.86797 * 120.00087 * 158.47919 * 16 14 13 19 19 H 1.48504 * 109.47329 * 94.98838 * 18 16 14 20 20 H 1.48499 * 109.46897 * 214.98731 * 18 16 14 21 21 H 1.48492 * 109.47399 * 334.98850 * 18 16 14 22 22 C 1.40714 * 119.50925 * 0.24921 * 13 12 11 23 23 C 1.37617 * 119.74525 * 359.47117 * 22 13 12 24 24 C 1.53000 * 117.49927 * 199.94562 * 5 4 2 25 25 C 1.53005 * 117.49891 * 268.60581 * 5 4 2 26 26 H 1.08999 * 109.47028 * 59.23693 * 1 2 3 27 27 H 1.08992 * 109.47151 * 179.24197 * 1 2 3 28 28 H 1.09004 * 109.46658 * 299.24216 * 1 2 3 29 29 H 1.09004 * 109.46327 * 240.00117 * 2 1 3 30 30 H 1.09006 * 109.46587 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47293 * 299.99908 * 3 2 1 32 32 H 1.08997 * 109.47164 * 60.00802 * 3 2 1 33 33 H 1.09004 * 109.46978 * 302.56569 * 4 2 1 34 34 H 1.09003 * 109.47197 * 182.56826 * 4 2 1 35 35 H 0.96997 * 120.00308 * 243.87491 * 6 5 4 36 36 H 1.08007 * 119.87332 * 359.97438 * 11 10 7 37 37 H 1.08007 * 120.12672 * 179.97438 * 12 11 10 38 38 H 0.96994 * 120.00112 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.12680 * 179.73266 * 22 13 12 40 40 H 1.08002 * 119.87425 * 180.27353 * 23 22 13 41 41 H 1.09002 * 117.49772 * 215.00168 * 24 5 4 42 42 H 1.09003 * 117.49887 * 0.02693 * 24 5 4 43 43 H 1.08994 * 117.49662 * 359.97438 * 25 5 4 44 44 H 1.09001 * 117.49680 * 144.97591 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5835 -2.1812 1.2172 6 7 1.9384 -2.9280 0.0079 7 16 3.5302 -3.1949 -0.3630 8 8 4.1737 -1.9295 -0.3033 9 8 3.5396 -4.0177 -1.5215 10 6 4.2143 -4.1631 0.9406 11 6 4.0943 -5.5438 0.9079 12 6 4.6252 -6.3100 1.9203 13 6 5.2913 -5.6867 2.9916 14 6 5.8403 -6.4636 4.0377 15 1 5.4873 -7.4704 4.2051 16 6 6.8412 -5.9279 4.8561 17 7 7.5618 -4.9210 4.4342 18 14 7.1482 -6.6509 6.5510 19 1 8.2424 -7.6518 6.4714 20 1 7.5362 -5.5668 7.4886 21 1 5.9101 -7.3089 7.0401 22 6 5.4020 -4.2842 3.0172 23 6 4.8685 -3.5384 1.9911 24 6 1.5709 -2.9466 2.5420 25 6 0.2525 -2.5200 1.8916 26 1 -0.3633 0.5256 -0.8831 27 1 -0.3633 -1.0275 -0.0136 28 1 -0.3633 0.5020 0.8968 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6397 -0.2348 2.1386 34 1 3.1291 -0.6816 1.2724 35 1 1.2412 -3.2661 -0.5755 36 1 3.5822 -6.0200 0.0848 37 1 4.5302 -7.3855 1.8931 38 1 8.2553 -4.5494 5.0015 39 1 5.9075 -3.7951 3.8368 40 1 4.9562 -2.4620 2.0063 41 1 1.8268 -4.0058 2.5137 42 1 1.8876 -2.4099 3.4363 43 1 -0.2975 -1.7029 2.3583 44 1 -0.3591 -3.2983 1.4352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701498696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:13 Heat of formation + Delta-G solvation = -56.973031 kcal Electronic energy + Delta-G solvation = -26159.837765 eV Core-core repulsion = 22589.599755 eV Total energy + Delta-G solvation = -3570.238010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.81674 -37.54162 -36.37572 -35.12189 -34.88780 -34.05698 -31.74670 -30.24902 -29.42982 -27.31165 -27.04892 -25.81045 -22.29710 -21.46183 -21.12540 -20.78695 -19.88588 -18.48728 -17.61357 -16.98299 -16.63263 -15.78934 -15.53368 -15.12536 -14.74082 -14.29489 -14.12261 -13.80227 -13.39143 -13.30558 -13.17756 -12.49181 -12.32179 -12.19318 -12.17061 -11.82302 -11.69056 -11.61122 -11.46867 -11.38272 -11.36088 -11.25786 -11.16908 -11.15662 -10.86801 -10.84706 -10.57824 -10.45416 -10.39898 -9.74075 -9.63742 -9.51362 -9.42050 -8.85749 -7.96563 -7.67321 -7.17048 -4.78567 1.30281 2.29233 2.85839 2.88561 2.95105 2.96269 3.64396 3.69094 3.87161 4.21929 4.56069 4.70928 4.98051 5.03300 5.09364 5.18299 5.26068 5.38611 5.42240 5.62076 5.68958 5.73949 5.81756 5.86035 5.90924 6.08159 6.08249 6.12267 6.17673 6.19937 6.30588 6.38030 6.49512 6.55694 6.60855 6.68119 6.72857 6.94716 7.07907 7.33171 7.36958 7.46015 7.68178 7.78549 7.97699 8.33166 8.52656 8.67706 9.73757 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.003875 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.506078 B = 7223.987667 C = 7642.122781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.094 4.094 5 C 0.113 3.887 6 N -1.092 6.092 7 S 2.692 3.308 8 O -0.978 6.978 9 O -0.991 6.991 10 C -0.784 4.784 11 C 0.002 3.998 12 C -0.242 4.242 13 C 0.139 3.861 14 C -0.434 4.434 15 H 0.087 0.913 16 C 0.074 3.926 17 N -0.758 5.758 18 Si 0.914 3.086 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.256 1.256 22 C -0.189 4.189 23 C -0.007 4.007 24 C -0.172 4.172 25 C -0.171 4.171 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.289 0.711 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.918 6.722 -0.789 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.133 4.133 5 C 0.023 3.977 6 N -0.845 5.845 7 S 2.791 3.209 8 O -0.968 6.968 9 O -0.981 6.981 10 C -0.881 4.881 11 C -0.018 4.018 12 C -0.262 4.262 13 C 0.135 3.865 14 C -0.461 4.461 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.380 5.380 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.180 1.180 22 C -0.210 4.210 23 C -0.027 4.027 24 C -0.211 4.211 25 C -0.210 4.210 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.241 0.759 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.152 7.303 -1.439 12.588 hybrid contribution -0.044 -0.969 1.106 1.472 sum -10.196 6.333 -0.333 12.008 Atomic orbital electron populations 1.21913 0.95806 1.01802 1.00897 1.20955 0.95096 0.95807 0.98826 1.21828 1.01665 0.95940 1.00976 1.21602 1.03083 0.90677 0.97928 1.20273 1.01813 0.91655 0.83957 1.55210 1.26256 1.69565 1.33516 1.01268 0.71926 0.73686 0.73996 1.93469 1.73805 1.42050 1.87463 1.93492 1.86192 1.69981 1.48472 1.29039 1.30065 1.06001 1.22961 1.20106 0.94243 0.91704 0.95722 1.20960 1.10476 0.97664 0.97139 1.17810 0.86666 0.92437 0.89561 1.19944 1.15203 1.00901 1.10062 0.89513 1.26149 0.94265 0.94118 1.00350 1.69842 1.12942 1.18792 1.36443 0.86192 0.80000 0.79759 0.80395 1.19105 1.19532 1.17950 1.21335 1.05876 0.93767 0.99982 1.20201 0.92978 0.97515 0.92004 1.23527 0.99401 1.02374 0.95821 1.23267 0.90623 1.03355 1.03760 0.93459 0.92227 0.93120 0.91071 0.92174 0.93166 0.93102 0.91091 0.89007 0.75851 0.88272 0.88434 0.89919 0.86015 0.87962 0.87355 0.88088 0.88361 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.68 37.16 0.32 -1.18 16 2 C -0.09 -1.10 2.83 -90.62 -0.26 -1.36 16 3 C -0.15 -1.68 9.19 37.16 0.34 -1.34 16 4 C -0.09 -1.26 4.14 -26.74 -0.11 -1.37 16 5 C 0.11 1.53 1.52 -131.82 -0.20 1.33 16 6 N -1.09 -16.08 5.29 0.54 0.00 -16.08 16 7 S 2.69 51.69 5.72 -107.50 -0.61 51.07 16 8 O -0.98 -20.23 14.85 -57.17 -0.85 -21.08 16 9 O -0.99 -21.43 17.38 -57.17 -0.99 -22.43 16 10 C -0.78 -16.92 5.34 -39.29 -0.21 -17.13 16 11 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 12 C -0.24 -5.65 9.80 -38.87 -0.38 -6.03 16 13 C 0.14 3.45 5.61 -106.83 -0.60 2.86 16 14 C -0.43 -10.51 9.05 -37.74 -0.34 -10.85 16 15 H 0.09 1.99 7.93 -52.49 -0.42 1.57 16 16 C 0.07 1.69 5.09 -17.34 -0.09 1.60 16 17 N -0.76 -17.91 10.93 55.55 0.61 -17.31 16 18 Si 0.91 16.73 29.61 -169.99 -5.03 11.69 16 19 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 22 C -0.19 -4.61 8.74 -38.87 -0.34 -4.95 16 23 C -0.01 -0.15 9.47 -39.66 -0.38 -0.53 16 24 C -0.17 -2.38 9.74 -26.69 -0.26 -2.64 16 25 C -0.17 -1.89 8.53 -26.69 -0.23 -2.12 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.59 6.30 -51.93 -0.33 0.27 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.09 1.44 6.59 -51.93 -0.34 1.10 16 35 H 0.41 5.06 8.96 -34.47 -0.31 4.75 16 36 H 0.10 2.01 7.70 -52.48 -0.40 1.60 16 37 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 38 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 39 H 0.12 3.02 6.02 -52.48 -0.32 2.70 16 40 H 0.10 2.17 7.50 -52.49 -0.39 1.77 16 41 H 0.11 1.71 7.98 -51.93 -0.41 1.30 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -28.54 368.58 -11.11 -39.65 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.68 Total: 12.94 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: -3.10 Total: -44.02 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.61 Total: -33.38 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.84 Total: -43.51 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.61 Total: 51.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.54 -11.11 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701498696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.318 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds