Wall clock time and date at job start Tue Mar 31 2020 13:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 C 1.52994 * 109.47228 * 120.00458 * 2 1 3 5 5 C 1.52997 * 109.47337 * 62.56215 * 4 2 1 6 6 N 1.46496 * 115.54988 * 54.27620 * 5 4 2 7 7 S 1.65604 * 119.99774 * 63.87644 * 6 5 4 8 8 O 1.42092 * 106.40249 * 308.75885 * 7 6 5 9 9 O 1.42101 * 106.39997 * 175.83900 * 7 6 5 10 10 C 1.76202 * 107.21945 * 62.29961 * 7 6 5 11 11 C 1.38634 * 119.75011 * 85.55217 * 10 7 6 12 12 C 1.37618 * 120.24937 * 179.97438 * 11 10 7 13 13 C 1.40712 * 119.74519 * 0.02562 * 12 11 10 14 14 C 1.41389 * 120.24643 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00090 * 339.66823 * 14 13 12 16 16 C 1.39947 * 120.00386 * 159.66800 * 14 13 12 17 17 N 1.30818 * 119.99677 * 338.47439 * 16 14 13 18 18 Si 1.86797 * 120.00087 * 158.47919 * 16 14 13 19 19 H 1.48504 * 109.47329 * 94.98838 * 18 16 14 20 20 H 1.48499 * 109.46897 * 214.98731 * 18 16 14 21 21 H 1.48492 * 109.47399 * 334.98850 * 18 16 14 22 22 C 1.40714 * 119.50925 * 0.24921 * 13 12 11 23 23 C 1.37617 * 119.74525 * 359.47117 * 22 13 12 24 24 C 1.53000 * 117.49927 * 199.94562 * 5 4 2 25 25 C 1.53005 * 117.49891 * 268.60581 * 5 4 2 26 26 H 1.08999 * 109.47028 * 59.23693 * 1 2 3 27 27 H 1.08992 * 109.47151 * 179.24197 * 1 2 3 28 28 H 1.09004 * 109.46658 * 299.24216 * 1 2 3 29 29 H 1.09004 * 109.46327 * 240.00117 * 2 1 3 30 30 H 1.09006 * 109.46587 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47293 * 299.99908 * 3 2 1 32 32 H 1.08997 * 109.47164 * 60.00802 * 3 2 1 33 33 H 1.09004 * 109.46978 * 302.56569 * 4 2 1 34 34 H 1.09003 * 109.47197 * 182.56826 * 4 2 1 35 35 H 0.96997 * 120.00308 * 243.87491 * 6 5 4 36 36 H 1.08007 * 119.87332 * 359.97438 * 11 10 7 37 37 H 1.08007 * 120.12672 * 179.97438 * 12 11 10 38 38 H 0.96994 * 120.00112 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.12680 * 179.73266 * 22 13 12 40 40 H 1.08002 * 119.87425 * 180.27353 * 23 22 13 41 41 H 1.09002 * 117.49772 * 215.00168 * 24 5 4 42 42 H 1.09003 * 117.49887 * 0.02693 * 24 5 4 43 43 H 1.08994 * 117.49662 * 359.97438 * 25 5 4 44 44 H 1.09001 * 117.49680 * 144.97591 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5835 -2.1812 1.2172 6 7 1.9384 -2.9280 0.0079 7 16 3.5302 -3.1949 -0.3630 8 8 4.1737 -1.9295 -0.3033 9 8 3.5396 -4.0177 -1.5215 10 6 4.2143 -4.1631 0.9406 11 6 4.0943 -5.5438 0.9079 12 6 4.6252 -6.3100 1.9203 13 6 5.2913 -5.6867 2.9916 14 6 5.8403 -6.4636 4.0377 15 1 5.4873 -7.4704 4.2051 16 6 6.8412 -5.9279 4.8561 17 7 7.5618 -4.9210 4.4342 18 14 7.1482 -6.6509 6.5510 19 1 8.2424 -7.6518 6.4714 20 1 7.5362 -5.5668 7.4886 21 1 5.9101 -7.3089 7.0401 22 6 5.4020 -4.2842 3.0172 23 6 4.8685 -3.5384 1.9911 24 6 1.5709 -2.9466 2.5420 25 6 0.2525 -2.5200 1.8916 26 1 -0.3633 0.5256 -0.8831 27 1 -0.3633 -1.0275 -0.0136 28 1 -0.3633 0.5020 0.8968 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6397 -0.2348 2.1386 34 1 3.1291 -0.6816 1.2724 35 1 1.2412 -3.2661 -0.5755 36 1 3.5822 -6.0200 0.0848 37 1 4.5302 -7.3855 1.8931 38 1 8.2553 -4.5494 5.0015 39 1 5.9075 -3.7951 3.8368 40 1 4.9562 -2.4620 2.0063 41 1 1.8268 -4.0058 2.5137 42 1 1.8876 -2.4099 3.4363 43 1 -0.2975 -1.7029 2.3583 44 1 -0.3591 -3.2983 1.4352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701498696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:12 Heat of formation + Delta-G solvation = -73.212158 kcal Electronic energy + Delta-G solvation = -26160.541946 eV Core-core repulsion = 22589.599755 eV Total energy + Delta-G solvation = -3570.942191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.89919 -39.32592 -38.03000 -36.74398 -35.92195 -35.77785 -32.98897 -32.04918 -31.24760 -28.28336 -27.89796 -27.60007 -23.41922 -23.12025 -22.91856 -21.89702 -20.96369 -19.94272 -19.40555 -18.49655 -18.20250 -17.19691 -17.07079 -16.25099 -16.06335 -15.79740 -15.46364 -15.12619 -14.98035 -14.73024 -14.29097 -14.08860 -13.96546 -13.50766 -13.42419 -13.16779 -13.07426 -13.00175 -12.93665 -12.84912 -12.83138 -12.55882 -12.50326 -12.36763 -12.25480 -12.02818 -11.81387 -11.64157 -11.51151 -11.40400 -11.17683 -11.13697 -10.69251 -10.06010 -9.77773 -9.50580 -8.88933 -6.62209 -0.26275 0.53853 1.10216 1.35569 1.42365 1.53335 2.11096 2.23862 2.52677 2.82341 2.97804 3.56165 3.67642 3.68390 3.99107 4.04221 4.12966 4.24679 4.32705 4.35404 4.43375 4.55712 4.86569 4.87449 4.88761 4.90275 4.92788 4.95978 5.05575 5.14320 5.15544 5.17297 5.26659 5.27994 5.34651 5.35971 5.49684 5.54417 5.58061 5.63532 5.64370 5.82406 5.95623 6.17130 6.24752 6.51526 6.70489 6.84745 8.05871 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.003875 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.506078 B = 7223.987667 C = 7642.122781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.095 4.095 5 C 0.097 3.903 6 N -1.075 6.075 7 S 2.718 3.282 8 O -0.993 6.993 9 O -1.013 7.013 10 C -0.790 4.790 11 C -0.002 4.002 12 C -0.259 4.259 13 C 0.113 3.887 14 C -0.465 4.465 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.792 5.792 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.262 1.262 21 H -0.253 1.253 22 C -0.210 4.210 23 C -0.005 4.005 24 C -0.193 4.193 25 C -0.133 4.133 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.423 0.577 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.299 0.701 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.046 7.316 -0.164 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.134 4.134 5 C 0.007 3.993 6 N -0.834 5.834 7 S 2.815 3.185 8 O -0.983 6.983 9 O -1.004 7.004 10 C -0.884 4.884 11 C -0.022 4.022 12 C -0.280 4.280 13 C 0.109 3.891 14 C -0.492 4.492 15 H 0.109 0.891 16 C -0.183 4.183 17 N -0.414 5.414 18 Si 0.808 3.192 19 H -0.184 1.184 20 H -0.186 1.186 21 H -0.177 1.177 22 C -0.230 4.230 23 C -0.025 4.025 24 C -0.232 4.232 25 C -0.172 4.172 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.259 0.741 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.144 0.856 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.269 7.876 -0.821 14.603 hybrid contribution 0.559 -1.075 0.815 1.460 sum -11.711 6.801 -0.006 13.542 Atomic orbital electron populations 1.21873 0.93576 1.02427 1.02066 1.20975 0.96977 0.95816 0.97251 1.21829 1.00441 0.95809 1.02326 1.21609 1.01334 0.90936 0.99519 1.20480 1.04446 0.91417 0.82981 1.54701 1.24765 1.69420 1.34464 1.00475 0.72677 0.72699 0.72665 1.93457 1.75123 1.42320 1.87367 1.93456 1.87010 1.70626 1.49266 1.29468 1.29582 1.06400 1.22921 1.20363 0.93917 0.92026 0.95866 1.21168 1.10991 0.98408 0.97389 1.18135 0.87554 0.92897 0.90488 1.20233 1.16331 1.01435 1.11152 0.89120 1.27020 0.93280 0.94214 1.03765 1.69872 1.13541 1.19926 1.38106 0.85080 0.79877 0.79071 0.75176 1.18429 1.18616 1.17661 1.21328 1.07091 0.94033 1.00597 1.20301 0.92508 0.97825 0.91894 1.23480 1.02497 1.00992 0.96189 1.23415 0.89216 1.03790 1.00753 0.92725 0.91829 0.91593 0.93321 0.94150 0.92089 0.91495 0.88860 0.92099 0.74079 0.86425 0.87472 0.88978 0.87147 0.87243 0.89806 0.87902 0.85605 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.68 71.98 0.63 -1.79 16 2 C -0.09 -2.11 2.83 -10.79 -0.03 -2.15 16 3 C -0.15 -3.14 9.19 71.98 0.66 -2.48 16 4 C -0.10 -2.40 4.14 30.59 0.13 -2.28 16 5 C 0.10 2.44 1.52 3.60 0.01 2.44 16 6 N -1.08 -30.30 5.29 -152.22 -0.81 -31.11 16 7 S 2.72 103.95 5.72 -56.49 -0.32 103.63 16 8 O -0.99 -41.43 14.85 -128.00 -1.90 -43.33 16 9 O -1.01 -43.32 17.38 -128.00 -2.22 -45.55 16 10 C -0.79 -34.58 5.34 22.46 0.12 -34.46 16 11 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 12 C -0.26 -12.42 9.80 22.73 0.22 -12.20 16 13 C 0.11 5.81 5.61 -21.29 -0.12 5.69 16 14 C -0.47 -23.14 9.05 23.46 0.21 -22.93 16 15 H 0.09 4.26 7.93 -2.91 -0.02 4.24 16 16 C 0.04 1.73 5.09 85.26 0.43 2.16 16 17 N -0.79 -38.33 10.93 21.83 0.24 -38.09 16 18 Si 0.99 34.18 29.61 68.60 2.03 36.21 16 19 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 20 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 21 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 22 C -0.21 -10.67 8.74 22.73 0.20 -10.47 16 23 C -0.01 -0.24 9.47 22.22 0.21 -0.03 16 24 C -0.19 -5.10 9.74 30.62 0.30 -4.80 16 25 C -0.13 -2.48 8.53 30.62 0.26 -2.22 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.06 1.02 6.30 -2.39 -0.02 1.00 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 1.33 7.70 -2.38 -0.02 1.31 16 30 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.90 8.09 -2.38 -0.02 1.88 16 34 H 0.06 1.92 6.59 -2.39 -0.02 1.91 16 35 H 0.42 9.60 8.96 -96.75 -0.87 8.73 16 36 H 0.12 4.72 7.70 -2.91 -0.02 4.70 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.30 12.83 8.30 -92.71 -0.77 12.06 16 39 H 0.11 5.75 6.02 -2.91 -0.02 5.74 16 40 H 0.11 4.81 7.50 -2.91 -0.02 4.79 16 41 H 0.08 2.66 7.98 -2.39 -0.02 2.64 16 42 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -63.06 368.58 0.59 -62.47 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: 0.13 Total: 41.15 kcal Atomic # 6 Polarization: -88.83 SS G_CDS: 3.44 Total: -85.39 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -0.57 Total: -69.20 kcal Atomic # 8 Polarization: -84.75 SS G_CDS: -4.13 Total: -88.88 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Atomic # 16 Polarization: 103.95 SS G_CDS: -0.32 Total: 103.63 kcal Total: -63.06 0.59 -62.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701498696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.740 kcal (2) G-P(sol) polarization free energy of solvation -63.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds