Wall clock time and date at job start Tue Mar 31 2020 14:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00319 * 2 1 4 4 C 1.53007 * 109.47112 * 124.99612 * 3 2 1 5 5 C 1.53005 * 109.47071 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47047 * 59.99915 * 5 4 3 7 7 C 1.52999 * 109.47065 * 300.00440 * 5 4 3 8 8 N 1.46494 * 109.46886 * 180.02562 * 5 4 3 9 9 S 1.65600 * 119.99722 * 172.83506 * 8 5 4 10 10 O 1.42095 * 106.40219 * 179.97438 * 9 8 5 11 11 O 1.42108 * 106.40388 * 47.01918 * 9 8 5 12 12 C 1.76202 * 107.22149 * 293.47830 * 9 8 5 13 13 C 1.38635 * 119.74442 * 280.29914 * 12 9 8 14 14 C 1.37620 * 120.24319 * 180.30108 * 13 12 9 15 15 C 1.40724 * 119.74642 * 359.42344 * 14 13 12 16 16 C 1.41387 * 120.24765 * 180.29829 * 15 14 13 17 17 H 1.08010 * 119.99762 * 30.66947 * 16 15 14 18 18 C 1.39939 * 120.00446 * 210.66789 * 16 15 14 19 19 N 1.30830 * 119.99723 * 20.12383 * 18 16 15 20 20 Si 1.86801 * 120.00422 * 200.12795 * 18 16 15 21 21 H 1.48494 * 109.47273 * 89.99814 * 20 18 16 22 22 H 1.48501 * 109.47379 * 209.99880 * 20 18 16 23 23 H 1.48502 * 109.46900 * 329.99715 * 20 18 16 24 24 C 1.40716 * 119.50958 * 0.27625 * 15 14 13 25 25 C 1.37621 * 119.74596 * 359.97438 * 24 15 14 26 26 H 1.08007 * 119.99609 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00546 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99512 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47469 * 4.99508 * 3 2 1 30 30 H 1.09004 * 109.47207 * 244.99656 * 3 2 1 31 31 H 1.09004 * 109.47041 * 60.00333 * 4 3 2 32 32 H 1.08991 * 109.47474 * 300.00042 * 4 3 2 33 33 H 1.08995 * 109.47450 * 187.31289 * 6 5 4 34 34 H 1.08999 * 109.47588 * 307.31499 * 6 5 4 35 35 H 1.09010 * 109.46863 * 67.31008 * 6 5 4 36 36 H 1.09003 * 109.47025 * 289.60883 * 7 5 4 37 37 H 1.08996 * 109.47314 * 49.60975 * 7 5 4 38 38 H 1.08999 * 109.47104 * 169.61378 * 7 5 4 39 39 H 0.96993 * 120.00532 * 352.83227 * 8 5 4 40 40 H 1.07996 * 119.88537 * 0.02562 * 13 12 9 41 41 H 1.08002 * 120.13300 * 179.69743 * 14 13 12 42 42 H 0.97000 * 120.00067 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.13039 * 180.02562 * 24 15 14 44 44 H 1.07999 * 119.87538 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8006 2.6577 1.1814 6 6 2.8116 3.8183 1.3066 7 6 4.5836 2.7939 -0.1260 8 7 4.7312 2.6842 2.3124 9 16 5.8196 3.9235 2.4603 10 8 6.5655 3.6637 3.6415 11 8 5.0907 5.1251 2.2492 12 6 6.9521 3.7862 1.1174 13 6 7.9875 2.8666 1.1822 14 6 8.8816 2.7550 0.1420 15 6 8.7345 3.5703 -0.9956 16 6 9.6433 3.4601 -2.0731 17 1 10.1105 2.5109 -2.2905 18 6 9.9373 4.5808 -2.8580 19 7 9.7086 5.7825 -2.3940 20 14 10.6561 4.3610 -4.5681 21 1 9.5548 4.2647 -5.5594 22 1 11.5173 5.5253 -4.8965 23 1 11.4679 3.1181 -4.6077 24 6 7.6761 4.4958 -1.0529 25 6 6.7969 4.5938 0.0013 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3587 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 3.7400 0.5064 1.0922 32 1 2.4773 1.2355 2.1130 33 1 3.3407 4.7623 1.1763 34 1 2.0421 3.7243 0.5404 35 1 2.3472 3.7951 2.2926 36 1 5.4086 2.0815 -0.1313 37 1 3.9225 2.5905 -0.9684 38 1 4.9777 3.8067 -0.2097 39 1 4.7099 1.9760 2.9748 40 1 8.0956 2.2385 2.0541 41 1 9.6904 2.0414 0.1964 42 1 9.9128 6.5593 -2.9379 43 1 7.5535 5.1262 -1.9212 44 1 5.9840 5.3037 -0.0403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717672748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:56 Heat of formation + Delta-G solvation = -51.088349 kcal Electronic energy + Delta-G solvation = -25869.537319 eV Core-core repulsion = 22299.554489 eV Total energy + Delta-G solvation = -3569.982831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.56939 -37.59306 -36.42381 -35.10950 -34.84689 -34.00837 -31.04544 -30.42986 -29.58988 -28.49975 -26.99599 -25.70537 -24.24428 -21.51004 -21.20340 -20.17356 -19.50007 -18.59628 -17.59852 -17.08211 -16.67124 -15.88241 -15.49337 -15.31787 -14.66881 -14.29498 -14.08904 -13.86652 -13.47851 -13.38619 -13.17775 -12.85603 -12.58364 -12.38539 -12.23643 -12.19820 -11.91074 -11.65079 -11.47494 -11.44588 -11.29227 -11.24895 -11.06365 -11.01772 -10.92846 -10.83220 -10.68313 -10.40870 -10.17612 -9.73319 -9.65932 -9.45951 -9.41331 -9.04984 -7.86322 -7.67579 -7.13692 -4.77926 1.28937 2.13368 2.24856 2.87880 2.88997 2.92700 2.94118 3.68200 3.72360 4.24000 4.50903 4.64950 4.83495 5.01707 5.10704 5.16567 5.24074 5.33375 5.40235 5.45298 5.52977 5.73093 5.76951 5.91838 6.01312 6.02474 6.07022 6.10650 6.17168 6.26031 6.42501 6.48103 6.62156 6.66417 6.70813 6.72737 6.76104 6.86812 7.03013 7.33248 7.37909 7.40367 7.57823 7.75385 7.97786 8.31079 8.51614 8.63271 9.81675 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003941 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.069615 B = 7103.918186 C = 8387.838613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.101 4.101 4 C -0.110 4.110 5 C 0.185 3.815 6 C -0.181 4.181 7 C -0.193 4.193 8 N -1.119 6.119 9 S 2.694 3.306 10 O -0.989 6.989 11 O -0.981 6.981 12 C -0.782 4.782 13 C 0.004 3.996 14 C -0.237 4.237 15 C 0.148 3.852 16 C -0.447 4.447 17 H 0.087 0.913 18 C 0.076 3.924 19 N -0.767 5.767 20 Si 0.913 3.087 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.180 4.180 25 C -0.011 4.011 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.408 0.592 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.289 0.711 43 H 0.111 0.889 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 -7.243 0.858 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.148 4.148 5 C 0.096 3.904 6 C -0.240 4.240 7 C -0.251 4.251 8 N -0.874 5.874 9 S 2.792 3.208 10 O -0.980 6.980 11 O -0.972 6.972 12 C -0.878 4.878 13 C -0.016 4.016 14 C -0.257 4.257 15 C 0.144 3.856 16 C -0.475 4.475 17 H 0.105 0.895 18 C -0.146 4.146 19 N -0.389 5.389 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.200 4.200 25 C -0.031 4.031 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.240 0.760 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.129 0.871 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.078 -6.184 1.393 13.640 hybrid contribution 0.719 -0.707 -1.091 1.486 sum -11.359 -6.891 0.301 13.289 Atomic orbital electron populations 1.23826 0.96009 1.01643 1.02427 1.23017 0.95989 0.98698 0.98799 1.20984 0.98287 0.95320 0.99212 1.21727 0.97777 0.96752 0.98594 1.20016 0.89014 0.95634 0.85691 1.22670 0.99580 0.99896 1.01806 1.22981 1.00940 1.05298 0.95889 1.55866 1.51527 1.44500 1.35531 1.01201 0.72896 0.72654 0.74005 1.93494 1.71749 1.85433 1.47322 1.93452 1.72201 1.44620 1.86878 1.29173 1.20615 1.17628 1.20340 1.20101 0.92019 0.93281 0.96203 1.21049 1.02177 1.07109 0.95378 1.17797 0.89411 0.88232 0.90126 1.19859 1.21125 0.96657 1.09838 0.89463 1.26061 0.94150 0.94442 0.99957 1.69826 1.33126 0.99282 1.36664 0.86216 0.79617 0.79427 0.81093 1.18841 1.19963 1.18268 1.21145 0.96264 1.03639 0.98969 1.20159 0.96749 0.94280 0.91872 0.88661 0.88810 0.87517 0.90798 0.89985 0.91064 0.91469 0.89150 0.91786 0.92509 0.90727 0.91277 0.89849 0.75966 0.88254 0.88268 0.89993 0.87094 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 29.01 0.42 -1.25 16 2 C -0.15 -1.31 9.52 -36.03 -0.34 -1.65 16 3 C -0.10 -0.95 4.99 -27.88 -0.14 -1.09 16 4 C -0.11 -1.14 4.37 -26.72 -0.12 -1.26 16 5 C 0.18 2.42 0.91 -131.82 -0.12 2.30 16 6 C -0.18 -2.39 7.98 37.16 0.30 -2.09 16 7 C -0.19 -2.83 6.77 37.16 0.25 -2.57 16 8 N -1.12 -16.16 5.54 0.53 0.00 -16.16 16 9 S 2.69 50.96 5.43 -107.50 -0.58 50.38 16 10 O -0.99 -21.23 17.56 -57.17 -1.00 -22.23 16 11 O -0.98 -20.09 14.13 -57.17 -0.81 -20.90 16 12 C -0.78 -16.48 4.11 -39.29 -0.16 -16.64 16 13 C 0.00 0.09 9.50 -39.66 -0.38 -0.29 16 14 C -0.24 -5.46 9.80 -38.87 -0.38 -5.84 16 15 C 0.15 3.64 5.48 -106.82 -0.59 3.05 16 16 C -0.45 -10.83 9.01 -37.75 -0.34 -11.17 16 17 H 0.09 2.01 7.92 -52.48 -0.42 1.59 16 18 C 0.08 1.75 5.03 -17.34 -0.09 1.66 16 19 N -0.77 -18.42 11.55 55.55 0.64 -17.78 16 20 Si 0.91 16.99 29.60 -169.99 -5.03 11.96 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 23 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 24 C -0.18 -4.31 8.68 -38.87 -0.34 -4.65 16 25 C -0.01 -0.23 6.73 -39.66 -0.27 -0.50 16 26 H 0.10 0.74 7.84 -52.48 -0.41 0.33 16 27 H 0.09 0.67 8.06 -52.49 -0.42 0.25 16 28 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.07 0.67 5.93 -51.93 -0.31 0.37 16 30 H 0.08 0.79 6.21 -51.93 -0.32 0.47 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.41 5.86 -51.93 -0.30 1.11 16 34 H 0.06 0.70 6.07 -51.93 -0.32 0.38 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.07 1.18 7.63 -51.93 -0.40 0.78 16 37 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 38 H 0.08 1.38 3.80 -51.93 -0.20 1.19 16 39 H 0.41 4.92 8.62 -34.46 -0.30 4.62 16 40 H 0.10 1.94 7.85 -52.49 -0.41 1.52 16 41 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 43 H 0.11 2.70 6.72 -52.49 -0.35 2.35 16 44 H 0.11 2.21 6.75 -52.49 -0.35 1.86 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -28.74 356.37 -9.77 -38.51 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.07 Total: 12.83 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: -2.29 Total: -41.98 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.64 Total: -33.94 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.81 Total: -43.13 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.58 Total: 50.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.74 -9.77 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717672748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.578 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds