Wall clock time and date at job start Tue Mar 31 2020 14:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 C 1.53005 * 109.47240 * 119.99879 * 2 1 3 5 5 N 1.46496 * 109.46870 * 64.99758 * 4 2 1 6 6 C 1.46499 * 120.00670 * 264.39946 * 5 4 2 7 7 C 1.50692 * 109.47009 * 262.19693 * 6 5 4 8 8 H 1.07999 * 120.00304 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00074 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99824 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00345 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47192 * 59.99929 * 11 9 7 13 13 H 1.48501 * 109.47028 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46698 * 299.99714 * 11 9 7 15 15 C 1.34782 * 119.99616 * 84.39829 * 5 4 2 16 16 O 1.21701 * 120.00067 * 1.93280 * 15 5 4 17 17 C 1.46583 * 119.99882 * 181.92654 * 15 5 4 18 18 C 1.36269 * 125.43879 * 172.13424 * 17 15 5 19 19 C 1.37973 * 114.02742 * 180.02562 * 18 17 15 20 20 C 1.35555 * 113.91870 * 359.96739 * 19 18 17 21 21 S 1.70358 * 111.19217 * 0.05353 * 20 19 18 22 22 C 1.51728 * 123.17381 * 179.97438 * 20 19 18 23 23 C 1.53360 * 107.99477 * 344.33925 * 22 20 19 24 24 O 1.43026 * 109.11827 * 47.86743 * 23 22 20 25 25 C 1.43007 * 114.15254 * 288.42514 * 24 23 22 26 26 H 1.09000 * 109.47344 * 60.00140 * 1 2 3 27 27 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47508 * 299.99825 * 1 2 3 29 29 H 1.08996 * 109.47131 * 240.00028 * 2 1 3 30 30 H 1.09000 * 109.47049 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47419 * 300.00146 * 3 2 1 32 32 H 1.09003 * 109.47359 * 60.00466 * 3 2 1 33 33 H 1.09002 * 109.46818 * 304.99985 * 4 2 1 34 34 H 1.08994 * 109.46747 * 184.99956 * 4 2 1 35 35 H 1.09003 * 109.46434 * 22.19925 * 6 5 4 36 36 H 1.09004 * 109.47299 * 142.19379 * 6 5 4 37 37 H 0.97003 * 120.00001 * 179.97438 * 10 9 7 38 38 H 1.07998 * 122.98817 * 0.02562 * 18 17 15 39 39 H 1.09000 * 109.76600 * 224.70298 * 22 20 19 40 40 H 1.08993 * 109.76168 * 103.97896 * 22 20 19 41 41 H 1.08998 * 109.53136 * 167.76106 * 23 22 20 42 42 H 1.09001 * 109.53209 * 287.97617 * 23 22 20 43 43 H 1.09002 * 109.68943 * 171.74086 * 25 24 23 44 44 H 1.08996 * 109.69195 * 292.27686 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4351 -2.5870 1.8674 7 6 0.7951 -3.1756 3.2071 8 1 1.8274 -3.2085 3.5227 9 6 -0.1935 -3.6722 4.0300 10 7 -1.4507 -3.6317 3.6459 11 14 0.2526 -4.4012 5.6911 12 1 0.9247 -3.3688 6.5204 13 1 -0.9815 -4.8606 6.3775 14 1 1.1691 -5.5531 5.4959 15 6 2.4158 -3.0136 0.5139 16 8 3.4455 -2.6432 -0.0187 17 6 2.0059 -4.4178 0.4196 18 6 2.6048 -5.3654 -0.3553 19 6 2.0247 -6.6140 -0.2647 20 6 0.9656 -6.6680 0.5796 21 16 0.6636 -5.1478 1.2868 22 6 0.1725 -7.9357 0.8366 23 6 0.5144 -8.9409 -0.2700 24 8 1.9349 -9.0022 -0.4246 25 6 2.5084 -7.8398 -1.0289 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2951 35 1 -0.2377 -1.7415 2.0109 36 1 -0.0581 -3.3446 1.2584 37 1 -2.1461 -3.9814 4.2247 38 1 3.4577 -5.1576 -0.9843 39 1 -0.8944 -7.7136 0.8160 40 1 0.4441 -8.3498 1.8076 41 1 0.1347 -9.9257 0.0023 42 1 0.0593 -8.6201 -1.2070 43 1 3.5957 -7.8984 -0.9789 44 1 2.1919 -7.7729 -2.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728518657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:29 Heat of formation + Delta-G solvation = -63.416833 kcal Electronic energy + Delta-G solvation = -26094.443253 eV Core-core repulsion = 22523.925819 eV Total energy + Delta-G solvation = -3570.517434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.40596 -39.03341 -36.38282 -35.49458 -34.29564 -32.50468 -32.02965 -29.39695 -27.91797 -26.85731 -26.09508 -25.29495 -23.94273 -23.04024 -21.67353 -20.11803 -19.04127 -17.55209 -17.30054 -16.78646 -16.28566 -15.78102 -15.62343 -14.80228 -14.64449 -14.53457 -14.41875 -14.30103 -13.59249 -13.26635 -13.16993 -12.72572 -12.67639 -12.52169 -12.43486 -12.18813 -11.97466 -11.75320 -11.51598 -11.36121 -11.17020 -11.10447 -10.97490 -10.73169 -10.65321 -10.64029 -10.35587 -10.23994 -9.94880 -9.79269 -9.24227 -8.99156 -8.79834 -8.04971 -7.69230 -7.49384 -6.42047 -4.44711 1.30757 2.47720 2.90073 2.94048 3.14747 3.18399 3.23133 3.84032 3.95400 4.04783 4.18256 4.91938 4.99771 5.11664 5.19020 5.26333 5.28332 5.39338 5.42033 5.54276 5.58491 5.69775 5.79872 5.82969 5.86684 5.94964 5.98247 6.03909 6.12008 6.20309 6.22135 6.30661 6.37795 6.44832 6.57256 6.63499 6.68726 6.81841 6.87880 7.04016 7.31589 7.38212 7.54671 7.72305 8.17450 8.56433 8.93845 9.16001 10.61588 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.005884 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.270238 B = 4757.765993 C = 6667.776876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.129 3.871 5 N -0.595 5.595 6 C 0.227 3.773 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.077 3.923 10 N -0.876 5.876 11 Si 0.890 3.110 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.591 3.409 16 O -0.566 6.566 17 C -0.294 4.294 18 C -0.070 4.070 19 C -0.183 4.183 20 C -0.297 4.297 21 S 0.419 5.581 22 C -0.077 4.077 23 C 0.067 3.933 24 O -0.383 6.383 25 C 0.130 3.870 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.271 0.729 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.034 -1.846 -6.157 6.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.006 3.994 5 N -0.324 5.324 6 C 0.104 3.896 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.129 4.129 10 N -0.512 5.512 11 Si 0.716 3.284 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.380 3.620 16 O -0.449 6.449 17 C -0.416 4.416 18 C -0.104 4.104 19 C -0.196 4.196 20 C -0.416 4.416 21 S 0.698 5.302 22 C -0.116 4.116 23 C -0.011 4.011 24 O -0.301 6.301 25 C 0.052 3.948 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.729 -1.355 -5.268 5.488 hybrid contribution 1.028 -0.735 -0.043 1.265 sum 0.299 -2.090 -5.311 5.715 Atomic orbital electron populations 1.21865 0.95065 1.02327 1.00979 1.21506 0.96267 0.95932 0.99531 1.21742 1.00878 0.95831 1.01425 1.21370 1.00208 0.80595 0.97236 1.48001 1.26253 1.07414 1.50734 1.19711 0.82023 0.96009 0.91816 1.21517 0.94780 1.40470 1.01362 0.91326 1.24900 0.94651 0.95050 0.98346 1.69896 0.99545 1.44091 1.37676 0.86639 0.78332 0.80105 0.83334 1.19722 1.20705 1.19474 1.16975 0.82987 0.83784 0.78211 1.90694 1.25099 1.79628 1.49472 1.24455 1.08191 0.98481 1.10425 1.19974 1.00211 0.90602 0.99609 1.19727 0.99633 0.96049 1.04161 1.26212 1.02896 1.07184 1.05344 1.85914 1.21663 0.90305 1.32270 1.20841 0.98894 0.91746 1.00137 1.22560 0.81844 0.99228 0.97476 1.87898 1.20884 1.38959 1.82355 1.21393 0.97894 0.81622 0.93941 0.93500 0.92071 0.92655 0.91121 0.92761 0.92938 0.92706 0.90261 0.91029 0.92511 0.94387 0.91889 0.84801 0.89955 0.90058 0.88828 0.93006 0.88453 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.38 37.16 0.31 -1.88 16 2 C -0.11 -1.76 3.09 -90.62 -0.28 -2.04 16 3 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 4 C 0.13 2.32 4.77 -4.04 -0.02 2.31 16 5 N -0.59 -12.38 2.21 -176.64 -0.39 -12.77 16 6 C 0.23 5.00 3.61 -5.20 -0.02 4.98 16 7 C -0.54 -12.87 6.94 -34.44 -0.24 -13.10 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.08 1.83 5.02 -17.82 -0.09 1.74 16 10 N -0.88 -21.30 13.29 55.43 0.74 -20.57 16 11 Si 0.89 19.20 29.54 -169.99 -5.02 14.18 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 15 C 0.59 13.16 7.52 -12.89 -0.10 13.06 16 16 O -0.57 -13.45 16.51 5.19 0.09 -13.37 16 17 C -0.29 -6.23 6.21 -36.93 -0.23 -6.46 16 18 C -0.07 -1.35 9.85 -40.39 -0.40 -1.75 16 19 C -0.18 -3.27 5.84 -104.86 -0.61 -3.89 16 20 C -0.30 -5.44 6.23 -34.76 -0.22 -5.66 16 21 S 0.42 8.58 15.80 -107.50 -1.70 6.88 16 22 C -0.08 -1.17 6.52 -27.19 -0.18 -1.35 16 23 C 0.07 0.89 6.82 37.34 0.25 1.14 16 24 O -0.38 -5.93 10.72 -35.23 -0.38 -6.31 16 25 C 0.13 1.93 7.12 36.82 0.26 2.19 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.04 6.46 -51.93 -0.34 0.70 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 34 H 0.07 1.32 7.57 -51.93 -0.39 0.93 16 35 H 0.06 1.28 6.96 -51.93 -0.36 0.92 16 36 H 0.04 0.88 4.51 -22.36 -0.10 0.78 16 37 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 38 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -27.03 361.82 -9.06 -36.09 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.64 Total: 2.56 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.21 Total: -12.15 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.35 Total: -33.34 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.29 Total: -19.67 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 8.58 SS G_CDS: -1.70 Total: 6.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.03 -9.06 -36.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728518657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.322 kcal (2) G-P(sol) polarization free energy of solvation -27.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds