Wall clock time and date at job start Tue Mar 31 2020 14:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46832 * 2 1 4 4 C 1.53005 * 109.47240 * 119.99879 * 2 1 3 5 5 N 1.46496 * 109.46870 * 64.99758 * 4 2 1 6 6 C 1.46499 * 120.00670 * 264.39946 * 5 4 2 7 7 C 1.50692 * 109.47009 * 262.19693 * 6 5 4 8 8 H 1.07999 * 120.00304 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00074 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99824 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00345 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47192 * 59.99929 * 11 9 7 13 13 H 1.48501 * 109.47028 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46698 * 299.99714 * 11 9 7 15 15 C 1.34782 * 119.99616 * 84.39829 * 5 4 2 16 16 O 1.21701 * 120.00067 * 1.93280 * 15 5 4 17 17 C 1.46583 * 119.99882 * 181.92654 * 15 5 4 18 18 C 1.36269 * 125.43879 * 172.13424 * 17 15 5 19 19 C 1.37973 * 114.02742 * 180.02562 * 18 17 15 20 20 C 1.35555 * 113.91870 * 359.96739 * 19 18 17 21 21 S 1.70358 * 111.19217 * 0.05353 * 20 19 18 22 22 C 1.51728 * 123.17381 * 179.97438 * 20 19 18 23 23 C 1.53360 * 107.99477 * 344.33925 * 22 20 19 24 24 O 1.43026 * 109.11827 * 47.86743 * 23 22 20 25 25 C 1.43007 * 114.15254 * 288.42514 * 24 23 22 26 26 H 1.09000 * 109.47344 * 60.00140 * 1 2 3 27 27 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47508 * 299.99825 * 1 2 3 29 29 H 1.08996 * 109.47131 * 240.00028 * 2 1 3 30 30 H 1.09000 * 109.47049 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47419 * 300.00146 * 3 2 1 32 32 H 1.09003 * 109.47359 * 60.00466 * 3 2 1 33 33 H 1.09002 * 109.46818 * 304.99985 * 4 2 1 34 34 H 1.08994 * 109.46747 * 184.99956 * 4 2 1 35 35 H 1.09003 * 109.46434 * 22.19925 * 6 5 4 36 36 H 1.09004 * 109.47299 * 142.19379 * 6 5 4 37 37 H 0.97003 * 120.00001 * 179.97438 * 10 9 7 38 38 H 1.07998 * 122.98817 * 0.02562 * 18 17 15 39 39 H 1.09000 * 109.76600 * 224.70298 * 22 20 19 40 40 H 1.08993 * 109.76168 * 103.97896 * 22 20 19 41 41 H 1.08998 * 109.53136 * 167.76106 * 23 22 20 42 42 H 1.09001 * 109.53209 * 287.97617 * 23 22 20 43 43 H 1.09002 * 109.68943 * 171.74086 * 25 24 23 44 44 H 1.08996 * 109.69195 * 292.27686 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4351 -2.5870 1.8674 7 6 0.7951 -3.1756 3.2071 8 1 1.8274 -3.2085 3.5227 9 6 -0.1935 -3.6722 4.0300 10 7 -1.4507 -3.6317 3.6459 11 14 0.2526 -4.4012 5.6911 12 1 0.9247 -3.3688 6.5204 13 1 -0.9815 -4.8606 6.3775 14 1 1.1691 -5.5531 5.4959 15 6 2.4158 -3.0136 0.5139 16 8 3.4455 -2.6432 -0.0187 17 6 2.0059 -4.4178 0.4196 18 6 2.6048 -5.3654 -0.3553 19 6 2.0247 -6.6140 -0.2647 20 6 0.9656 -6.6680 0.5796 21 16 0.6636 -5.1478 1.2868 22 6 0.1725 -7.9357 0.8366 23 6 0.5144 -8.9409 -0.2700 24 8 1.9349 -9.0022 -0.4246 25 6 2.5084 -7.8398 -1.0289 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2951 35 1 -0.2377 -1.7415 2.0109 36 1 -0.0581 -3.3446 1.2584 37 1 -2.1461 -3.9814 4.2247 38 1 3.4577 -5.1576 -0.9843 39 1 -0.8944 -7.7136 0.8160 40 1 0.4441 -8.3498 1.8076 41 1 0.1347 -9.9257 0.0023 42 1 0.0593 -8.6201 -1.2070 43 1 3.5957 -7.8984 -0.9789 44 1 2.1919 -7.7729 -2.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728518657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:28 Heat of formation + Delta-G solvation = -76.912895 kcal Electronic energy + Delta-G solvation = -26095.028486 eV Core-core repulsion = 22523.925819 eV Total energy + Delta-G solvation = -3571.102667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98847 -40.37876 -37.84427 -36.95658 -35.89169 -34.24290 -33.27095 -30.77703 -29.62878 -28.01779 -27.57787 -26.56928 -25.47001 -24.63645 -23.04937 -21.46280 -20.52161 -19.02298 -18.96336 -18.53703 -17.61434 -17.17593 -17.03607 -16.43503 -16.14286 -15.98457 -15.77754 -15.71932 -14.91898 -14.73853 -14.47802 -14.41070 -14.14620 -13.97244 -13.78902 -13.50669 -13.36457 -13.11167 -12.97783 -12.78207 -12.72544 -12.61481 -12.31242 -12.18352 -12.10972 -11.95941 -11.79223 -11.64447 -11.60250 -11.11402 -10.99148 -10.63141 -10.35990 -9.69349 -9.25011 -9.07326 -8.25378 -6.32749 -0.25313 0.90100 1.36647 1.39168 1.43570 1.45562 1.49019 2.20679 2.30364 2.41627 2.95015 3.06282 3.66353 3.79251 3.92844 4.00061 4.05447 4.13888 4.17695 4.33389 4.40170 4.51548 4.56667 4.65355 4.66519 4.73098 4.74176 4.80880 4.82853 4.88490 4.96464 4.99109 5.02079 5.07748 5.09941 5.21523 5.36777 5.40222 5.43407 5.59978 5.61504 5.79302 5.91062 6.18576 6.43133 6.70831 7.20177 7.31933 8.77885 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.005884 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.270238 B = 4757.765993 C = 6667.776876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.593 5.593 6 C 0.239 3.761 7 C -0.547 4.547 8 H 0.049 0.951 9 C 0.053 3.947 10 N -0.892 5.892 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.273 1.273 14 H -0.274 1.274 15 C 0.583 3.417 16 O -0.591 6.591 17 C -0.321 4.321 18 C -0.064 4.064 19 C -0.186 4.186 20 C -0.288 4.288 21 S 0.374 5.626 22 C -0.082 4.082 23 C 0.066 3.934 24 O -0.394 6.394 25 C 0.131 3.869 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.274 0.726 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -2.860 -6.799 7.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.192 4.192 4 C 0.001 3.999 5 N -0.322 5.322 6 C 0.116 3.884 7 C -0.588 4.588 8 H 0.067 0.933 9 C -0.152 4.152 10 N -0.529 5.529 11 Si 0.755 3.245 12 H -0.199 1.199 13 H -0.197 1.197 14 H -0.200 1.200 15 C 0.373 3.627 16 O -0.476 6.476 17 C -0.442 4.442 18 C -0.099 4.099 19 C -0.198 4.198 20 C -0.408 4.408 21 S 0.653 5.347 22 C -0.121 4.121 23 C -0.011 4.011 24 O -0.313 6.313 25 C 0.053 3.947 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.130 0.870 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.096 -2.340 -5.892 6.434 hybrid contribution 1.160 -0.501 0.092 1.267 sum 0.065 -2.841 -5.800 6.459 Atomic orbital electron populations 1.21812 0.94500 1.01094 1.02308 1.21426 0.96635 0.97386 0.97085 1.21697 1.00940 0.93635 1.02915 1.21577 0.99853 0.79562 0.98904 1.48058 1.25665 1.08434 1.50022 1.19499 0.82155 0.95504 0.91232 1.21455 0.93826 1.41229 1.02307 0.93298 1.25273 0.94568 0.95141 1.00169 1.69936 0.99924 1.44646 1.38405 0.86024 0.78234 0.79278 0.80959 1.19922 1.19738 1.19964 1.17225 0.82836 0.84483 0.78115 1.90657 1.26022 1.80196 1.50728 1.24502 1.09257 0.98457 1.11993 1.20251 0.99999 0.90914 0.98706 1.20122 0.99034 0.96689 1.03995 1.26497 1.02970 1.07055 1.04298 1.85878 1.22465 0.92374 1.33973 1.21051 0.99298 0.90623 1.01139 1.22766 0.80904 1.00229 0.97212 1.87897 1.22139 1.38789 1.82462 1.21557 0.98810 0.79914 0.94448 0.91335 0.94566 0.92096 0.93184 0.92676 0.91138 0.91497 0.89734 0.91843 0.93297 0.94608 0.91657 0.83917 0.88530 0.89965 0.85735 0.91778 0.87028 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.38 71.98 0.60 -3.56 16 2 C -0.11 -3.30 3.09 -10.79 -0.03 -3.33 16 3 C -0.13 -3.21 9.19 71.98 0.66 -2.54 16 4 C 0.12 4.55 4.77 86.38 0.41 4.96 16 5 N -0.59 -25.58 2.21 -830.99 -1.84 -27.42 16 6 C 0.24 10.87 3.61 85.63 0.31 11.18 16 7 C -0.55 -26.75 6.94 25.60 0.18 -26.57 16 8 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 9 C 0.05 2.55 5.02 84.65 0.42 2.98 16 10 N -0.89 -43.59 13.29 21.45 0.28 -43.31 16 11 Si 0.93 39.27 29.54 68.60 2.03 41.30 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 C 0.58 26.83 7.52 86.42 0.65 27.48 16 16 O -0.59 -28.92 16.51 -4.35 -0.07 -28.99 16 17 C -0.32 -13.91 6.21 23.99 0.15 -13.76 16 18 C -0.06 -2.45 9.85 21.75 0.21 -2.24 16 19 C -0.19 -6.40 5.84 -20.02 -0.12 -6.52 16 20 C -0.29 -10.27 6.23 25.39 0.16 -10.11 16 21 S 0.37 15.56 15.80 -56.49 -0.89 14.67 16 22 C -0.08 -2.31 6.52 30.30 0.20 -2.11 16 23 C 0.07 1.53 6.82 72.10 0.49 2.02 16 24 O -0.39 -10.94 10.72 -148.98 -1.60 -12.53 16 25 C 0.13 3.52 7.12 71.76 0.51 4.03 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.24 6.46 -2.39 -0.02 1.23 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 2.98 8.02 -2.39 -0.02 2.96 16 34 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16 35 H 0.05 2.28 6.96 -2.39 -0.02 2.26 16 36 H 0.04 1.72 4.51 -21.19 -0.10 1.63 16 37 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 38 H 0.14 5.14 8.06 -2.91 -0.02 5.11 16 39 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 43 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -58.30 361.82 3.63 -54.68 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.91 Total: 19.72 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.81 Total: -18.10 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.56 Total: -70.73 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.67 Total: -41.53 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 15.56 SS G_CDS: -0.89 Total: 14.67 kcal Total: -58.30 3.63 -54.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728518657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.235 kcal (2) G-P(sol) polarization free energy of solvation -58.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds