Wall clock time and date at job start Tue Mar 31 2020 13:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.20830 * 119.99594 * 120.00100 * 4 2 1 6 6 O 1.34222 * 120.00024 * 299.72383 * 4 2 1 7 7 C 1.45201 * 116.99867 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47187 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00334 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99930 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46844 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99684 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00028 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47074 * 89.99898 * 16 14 12 18 18 H 1.48495 * 109.47292 * 210.00210 * 16 14 12 19 19 H 1.48500 * 109.46904 * 330.00222 * 16 14 12 20 20 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 21 21 C 1.38239 * 119.97436 * 359.73131 * 20 2 1 22 22 C 1.38200 * 120.02794 * 179.72378 * 21 20 2 23 23 C 1.38459 * 119.97114 * 0.57011 * 22 21 20 24 24 F 1.35098 * 120.02712 * 179.68176 * 23 22 21 25 25 C 1.38463 * 119.95077 * 359.70299 * 23 22 21 26 26 C 1.38205 * 119.97120 * 359.97438 * 25 23 22 27 27 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 28 28 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 29 29 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 32 32 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 33 33 H 1.09009 * 109.46864 * 300.00062 * 7 6 4 34 34 H 1.09001 * 109.47271 * 60.00074 * 7 6 4 35 35 H 0.96997 * 120.00313 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46986 * 300.00066 * 11 10 8 37 37 H 1.08997 * 109.47325 * 60.00538 * 11 10 8 38 38 H 0.97001 * 120.00090 * 179.97438 * 15 14 12 39 39 H 1.08006 * 119.99093 * 359.97438 * 21 20 2 40 40 H 1.08003 * 120.01679 * 180.25213 * 22 21 20 41 41 H 1.08002 * 120.01565 * 179.97438 * 25 23 22 42 42 H 1.07995 * 119.98942 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7269 -1.6928 1.1198 6 8 1.7125 -0.2484 2.4496 7 6 2.2318 -0.9825 3.5897 8 6 1.7722 -0.3221 4.8639 9 8 1.0760 0.6698 4.8160 10 7 2.1348 -0.8338 6.0569 11 6 1.6885 -0.1914 7.2957 12 6 2.2273 -0.9534 8.4790 13 1 2.8405 -1.8287 8.3238 14 6 1.9375 -0.5329 9.7597 15 7 1.1903 0.5328 9.9486 16 14 2.6048 -1.4777 11.2265 17 1 3.9282 -0.9247 11.6109 18 1 1.6638 -1.3487 12.3680 19 1 2.7527 -2.9107 10.8664 20 6 2.0323 -0.7105 -1.2304 21 6 1.1336 -1.2406 -2.1371 22 6 1.5930 -1.8874 -3.2687 23 6 2.9541 -2.0147 -3.4881 24 9 3.4045 -2.6524 -4.5906 25 6 3.8535 -1.4883 -2.5763 26 6 3.3916 -0.8361 -1.4488 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.8641 -2.0082 3.5595 34 1 3.3212 -0.9857 3.5543 35 1 2.6919 -1.6268 6.0954 36 1 2.0564 0.8341 7.3262 37 1 0.5991 -0.1878 7.3310 38 1 0.9861 0.8284 10.8497 39 1 0.0718 -1.1458 -1.9632 40 1 0.8906 -2.2980 -3.9791 41 1 4.9155 -1.5874 -2.7462 42 1 4.0928 -0.4257 -0.7373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728648771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:23 Heat of formation + Delta-G solvation = -149.792960 kcal Electronic energy + Delta-G solvation = -26278.890187 eV Core-core repulsion = 22138.414027 eV Total energy + Delta-G solvation = -4140.476160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.19294 -41.22102 -39.54885 -38.64099 -36.43306 -35.63239 -34.28166 -32.43952 -31.63068 -29.88158 -29.10704 -27.80949 -26.76412 -24.54654 -23.11842 -22.94228 -22.26722 -20.06969 -19.94974 -18.13207 -17.66953 -17.48647 -16.79024 -16.64232 -16.36167 -15.88115 -15.62375 -15.43807 -15.04030 -14.93108 -14.69003 -14.33379 -13.97045 -13.80955 -13.38618 -13.21682 -13.08722 -12.84122 -12.74284 -12.48344 -12.28469 -12.20471 -12.01910 -11.82957 -11.77139 -11.43395 -11.12438 -11.04057 -10.94391 -10.73587 -10.45384 -10.36911 -9.46959 -9.42074 -9.22240 -8.93628 -8.81010 -8.02444 -6.22196 -4.29709 0.73095 0.91273 2.03421 2.33851 3.13605 3.21323 3.25915 3.28009 3.30191 3.88454 3.92634 4.04130 4.26901 4.31434 4.52148 4.56577 4.59551 4.66383 4.91061 5.06215 5.07798 5.13878 5.19108 5.29091 5.30061 5.36046 5.42965 5.45233 5.54223 5.62634 5.75449 5.81747 5.86074 5.94973 6.13480 6.27595 6.53165 7.19068 7.26897 7.42509 7.54950 7.62543 7.89100 8.46344 8.67914 8.92631 9.36779 10.87859 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030600 B = 0.002043 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.803769 B =13704.924860 C =14217.544798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.468 3.532 5 O -0.501 6.501 6 O -0.323 6.323 7 C 0.047 3.953 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.707 5.707 11 C 0.251 3.749 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.082 4.082 21 C -0.081 4.081 22 C -0.156 4.156 23 C 0.099 3.901 24 F -0.141 7.141 25 C -0.154 4.154 26 C -0.057 4.057 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.393 0.607 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -2.566 -26.324 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.009 4.009 3 C -0.199 4.199 4 C 0.310 3.690 5 O -0.389 6.389 6 O -0.237 6.237 7 C -0.030 4.030 8 C 0.283 3.717 9 O -0.411 6.411 10 N -0.357 5.357 11 C 0.131 3.869 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.082 4.082 21 C -0.099 4.099 22 C -0.175 4.175 23 C 0.080 3.920 24 F -0.120 7.120 25 C -0.172 4.172 26 C -0.075 4.075 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.226 0.774 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.387 -2.040 -26.208 26.324 hybrid contribution 0.890 -1.246 0.781 1.719 sum 2.277 -3.285 -25.427 25.739 Atomic orbital electron populations 1.22016 0.90766 1.03345 1.04451 1.19319 0.98289 0.96226 0.87087 1.21942 1.01711 0.91919 1.04346 1.23522 0.77670 0.82892 0.84941 1.90685 1.35367 1.25584 1.87247 1.86550 1.69034 1.54268 1.13868 1.22892 1.00379 0.96185 0.83557 1.19868 0.82009 0.85333 0.84513 1.90705 1.37733 1.25537 1.87147 1.46376 1.52014 1.31050 1.06232 1.19178 0.95926 0.93660 0.78112 1.21204 1.33614 1.13025 0.90553 0.91770 1.24954 0.94832 0.95102 0.99115 1.69970 1.36266 1.23489 1.22427 0.86386 0.78747 0.80028 0.81589 1.20419 1.20967 1.19721 1.19393 0.93657 0.99913 0.95221 1.21022 1.00363 0.95739 0.92754 1.21106 0.93782 1.02819 0.99762 1.17768 0.92806 0.96637 0.84792 1.91499 1.89882 1.79570 1.51046 1.21111 1.00121 1.01043 0.94960 1.20821 0.95024 0.96112 0.95560 0.89866 0.90401 0.91554 0.91805 0.90596 0.89898 0.88552 0.88540 0.77429 0.95250 0.95238 0.92356 0.84233 0.84586 0.84616 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.06 37.16 0.26 -0.91 16 2 C -0.01 -0.08 0.80 -156.81 -0.12 -0.20 16 3 C -0.14 -1.16 8.22 37.16 0.31 -0.86 16 4 C 0.47 6.00 6.42 36.01 0.23 6.23 16 5 O -0.50 -7.29 14.86 -18.75 -0.28 -7.56 16 6 O -0.32 -4.77 9.56 -45.88 -0.44 -5.21 16 7 C 0.05 0.69 5.94 36.00 0.21 0.91 16 8 C 0.50 9.70 7.91 -10.99 -0.09 9.62 16 9 O -0.53 -12.61 16.50 -14.10 -0.23 -12.84 16 10 N -0.71 -14.29 5.55 -61.47 -0.34 -14.63 16 11 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 12 C -0.55 -14.44 9.28 -34.44 -0.32 -14.76 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.55 13.29 55.43 0.74 -24.81 16 16 Si 0.91 20.49 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C -0.08 -0.76 4.38 -104.62 -0.46 -1.22 16 21 C -0.08 -0.65 8.97 -39.59 -0.36 -1.00 16 22 C -0.16 -1.28 10.03 -39.51 -0.40 -1.67 16 23 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 24 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 25 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 26 C -0.06 -0.54 7.93 -39.59 -0.31 -0.86 16 27 H 0.08 0.75 8.12 -51.93 -0.42 0.32 16 28 H 0.08 0.43 7.52 -51.93 -0.39 0.04 16 29 H 0.07 0.51 7.50 -51.93 -0.39 0.12 16 30 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.39 6.68 8.32 -40.82 -0.34 6.34 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.14 0.82 5.89 -52.48 -0.31 0.51 16 40 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.13 1.17 7.51 -52.49 -0.39 0.78 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -33.13 366.11 -7.41 -40.54 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.54 Total: 2.72 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.85 Total: 2.21 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.40 Total: -39.44 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.95 Total: -25.62 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.13 -7.41 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728648771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.250 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds