Wall clock time and date at job start Tue Mar 31 2020 13:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.20830 * 119.99594 * 120.00100 * 4 2 1 6 6 O 1.34222 * 120.00024 * 299.72383 * 4 2 1 7 7 C 1.45201 * 116.99867 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.47187 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00334 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99930 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46844 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99684 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00028 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47074 * 89.99898 * 16 14 12 18 18 H 1.48495 * 109.47292 * 210.00210 * 16 14 12 19 19 H 1.48500 * 109.46904 * 330.00222 * 16 14 12 20 20 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 21 21 C 1.38239 * 119.97436 * 359.73131 * 20 2 1 22 22 C 1.38200 * 120.02794 * 179.72378 * 21 20 2 23 23 C 1.38459 * 119.97114 * 0.57011 * 22 21 20 24 24 F 1.35098 * 120.02712 * 179.68176 * 23 22 21 25 25 C 1.38463 * 119.95077 * 359.70299 * 23 22 21 26 26 C 1.38205 * 119.97120 * 359.97438 * 25 23 22 27 27 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 28 28 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 29 29 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 32 32 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 33 33 H 1.09009 * 109.46864 * 300.00062 * 7 6 4 34 34 H 1.09001 * 109.47271 * 60.00074 * 7 6 4 35 35 H 0.96997 * 120.00313 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46986 * 300.00066 * 11 10 8 37 37 H 1.08997 * 109.47325 * 60.00538 * 11 10 8 38 38 H 0.97001 * 120.00090 * 179.97438 * 15 14 12 39 39 H 1.08006 * 119.99093 * 359.97438 * 21 20 2 40 40 H 1.08003 * 120.01679 * 180.25213 * 22 21 20 41 41 H 1.08002 * 120.01565 * 179.97438 * 25 23 22 42 42 H 1.07995 * 119.98942 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7269 -1.6928 1.1198 6 8 1.7125 -0.2484 2.4496 7 6 2.2318 -0.9825 3.5897 8 6 1.7722 -0.3221 4.8639 9 8 1.0760 0.6698 4.8160 10 7 2.1348 -0.8338 6.0569 11 6 1.6885 -0.1914 7.2957 12 6 2.2273 -0.9534 8.4790 13 1 2.8405 -1.8287 8.3238 14 6 1.9375 -0.5329 9.7597 15 7 1.1903 0.5328 9.9486 16 14 2.6048 -1.4777 11.2265 17 1 3.9282 -0.9247 11.6109 18 1 1.6638 -1.3487 12.3680 19 1 2.7527 -2.9107 10.8664 20 6 2.0323 -0.7105 -1.2304 21 6 1.1336 -1.2406 -2.1371 22 6 1.5930 -1.8874 -3.2687 23 6 2.9541 -2.0147 -3.4881 24 9 3.4045 -2.6524 -4.5906 25 6 3.8535 -1.4883 -2.5763 26 6 3.3916 -0.8361 -1.4488 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.8641 -2.0082 3.5595 34 1 3.3212 -0.9857 3.5543 35 1 2.6919 -1.6268 6.0954 36 1 2.0564 0.8341 7.3262 37 1 0.5991 -0.1878 7.3310 38 1 0.9861 0.8284 10.8497 39 1 0.0718 -1.1458 -1.9632 40 1 0.8906 -2.2980 -3.9791 41 1 4.9155 -1.5874 -2.7462 42 1 4.0928 -0.4257 -0.7373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728648771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:22 Heat of formation + Delta-G solvation = -169.304292 kcal Electronic energy + Delta-G solvation = -26279.736262 eV Core-core repulsion = 22138.414027 eV Total energy + Delta-G solvation = -4141.322235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.91592 -42.18044 -40.68521 -39.93392 -37.55594 -36.38524 -36.17866 -34.41599 -32.26794 -30.97484 -30.24932 -28.52474 -28.43492 -25.46514 -24.58015 -23.75090 -23.36944 -21.64812 -20.92968 -19.26098 -18.77047 -18.52291 -18.02864 -17.81668 -17.31053 -17.03180 -16.99125 -16.59467 -16.30678 -16.19916 -15.79801 -15.50671 -14.80428 -14.77378 -14.54982 -14.31030 -14.20776 -13.94622 -13.78632 -13.72873 -13.48736 -13.22827 -13.06006 -12.93817 -12.90710 -12.72186 -12.44463 -12.23621 -12.12209 -11.89814 -11.78025 -11.50535 -11.40225 -10.90193 -10.81941 -10.06051 -9.93053 -9.63035 -8.29840 -6.46279 0.03387 0.27470 1.04044 1.25863 1.44681 1.45936 1.55384 1.57414 2.32247 2.48621 2.68558 3.05382 3.21456 3.33152 3.56244 3.66514 3.77741 3.88959 3.93708 3.96354 4.04256 4.04710 4.30146 4.43571 4.71715 4.73003 4.78917 4.80052 4.93762 4.98615 5.06667 5.12618 5.14081 5.22091 5.23176 5.26781 5.30927 5.41728 5.48788 5.62626 5.82042 5.88127 6.54833 6.62827 6.78212 7.20212 7.35336 8.82098 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030600 B = 0.002043 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.803769 B =13704.924860 C =14217.544798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.004 4.004 3 C -0.141 4.141 4 C 0.468 3.532 5 O -0.519 6.519 6 O -0.339 6.339 7 C 0.059 3.941 8 C 0.501 3.499 9 O -0.581 6.581 10 N -0.700 5.700 11 C 0.267 3.733 12 C -0.557 4.557 13 H 0.085 0.915 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.984 3.016 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.256 1.256 20 C -0.090 4.090 21 C -0.079 4.079 22 C -0.154 4.154 23 C 0.083 3.917 24 F -0.148 7.148 25 C -0.160 4.160 26 C -0.069 4.069 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.412 0.588 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.269 0.731 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -4.139 -27.358 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.005 4.005 3 C -0.198 4.198 4 C 0.311 3.689 5 O -0.407 6.407 6 O -0.255 6.255 7 C -0.018 4.018 8 C 0.286 3.714 9 O -0.461 6.461 10 N -0.351 5.351 11 C 0.145 3.855 12 C -0.595 4.595 13 H 0.103 0.897 14 C -0.195 4.195 15 N -0.567 5.567 16 Si 0.807 3.193 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.180 1.180 20 C -0.090 4.090 21 C -0.096 4.096 22 C -0.173 4.173 23 C 0.064 3.936 24 F -0.127 7.127 25 C -0.179 4.179 26 C -0.087 4.087 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.248 0.752 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.078 0.922 39 H 0.182 0.818 40 H 0.175 0.825 41 H 0.164 0.836 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.908 -3.651 -27.280 27.590 hybrid contribution 0.721 -0.726 1.018 1.444 sum 2.630 -4.377 -26.262 26.754 Atomic orbital electron populations 1.22069 0.89425 1.03851 1.05215 1.19427 0.99289 0.96376 0.85437 1.21959 1.01803 0.91219 1.04800 1.24225 0.77069 0.82726 0.84836 1.90673 1.36259 1.26514 1.87301 1.86560 1.69500 1.54816 1.14576 1.22734 1.01643 0.96220 0.81231 1.20648 0.80579 0.84489 0.85656 1.90683 1.39730 1.27753 1.87944 1.46058 1.52354 1.31538 1.05182 1.18624 0.93625 0.92498 0.80790 1.21607 1.33584 1.13524 0.90769 0.89676 1.26041 0.94902 0.95963 1.02636 1.70127 1.37843 1.25455 1.23305 0.85161 0.77909 0.79098 0.77083 1.19655 1.21023 1.17994 1.19470 0.93829 1.00356 0.95328 1.21292 1.01404 0.94812 0.92124 1.21382 0.93597 1.02210 1.00104 1.18010 0.93607 0.97191 0.84836 1.91480 1.90048 1.79792 1.51393 1.21257 1.00832 1.00926 0.94860 1.20906 0.95395 0.96610 0.95805 0.91256 0.87530 0.91170 0.91772 0.88355 0.91176 0.86115 0.86016 0.75201 0.98916 0.98895 0.92203 0.81837 0.82521 0.83641 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 7.06 71.98 0.51 -1.54 16 2 C 0.00 -0.07 0.80 -53.67 -0.04 -0.12 16 3 C -0.14 -2.13 8.22 71.98 0.59 -1.54 16 4 C 0.47 11.43 6.42 71.24 0.46 11.89 16 5 O -0.52 -14.33 14.86 21.95 0.33 -14.00 16 6 O -0.34 -9.79 9.56 -44.98 -0.43 -10.22 16 7 C 0.06 1.64 5.94 71.23 0.42 2.06 16 8 C 0.50 19.54 7.91 87.66 0.69 20.24 16 9 O -0.58 -28.37 16.50 15.78 0.26 -28.11 16 10 N -0.70 -28.39 5.55 -466.78 -2.59 -30.98 16 11 C 0.27 14.22 5.43 85.63 0.46 14.69 16 12 C -0.56 -29.50 9.28 25.60 0.24 -29.27 16 13 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 16 Si 0.98 41.54 29.54 68.60 2.03 43.57 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 C -0.09 -1.50 4.38 -19.86 -0.09 -1.59 16 21 C -0.08 -1.06 8.97 22.26 0.20 -0.86 16 22 C -0.15 -2.18 10.03 22.31 0.22 -1.95 16 23 C 0.08 1.45 7.30 22.38 0.16 1.61 16 24 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 25 C -0.16 -2.75 10.03 22.32 0.22 -2.53 16 26 C -0.07 -1.23 7.93 22.26 0.18 -1.06 16 27 H 0.07 1.18 8.12 -2.38 -0.02 1.16 16 28 H 0.11 0.84 7.52 -2.39 -0.02 0.82 16 29 H 0.07 0.91 7.50 -2.39 -0.02 0.89 16 30 H 0.06 0.95 7.39 -2.39 -0.02 0.93 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 33 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 34 H 0.12 2.83 8.13 -2.39 -0.02 2.81 16 35 H 0.41 13.47 8.32 -92.71 -0.77 12.70 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.10 16 39 H 0.16 1.33 5.89 -2.91 -0.02 1.31 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.13 2.25 7.51 -2.91 -0.02 2.22 16 Total: -1.00 -73.68 366.11 5.63 -68.05 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.28 Total: 17.69 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 4.70 Total: 10.75 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.30 Total: -85.65 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: 0.16 Total: -52.33 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -73.68 5.63 -68.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728648771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.255 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds