Wall clock time and date at job start Tue Mar 31 2020 13:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46702 * 2 1 4 4 C 1.50702 * 109.47091 * 240.00012 * 2 1 3 5 5 O 1.20823 * 119.99404 * 239.99530 * 4 2 1 6 6 O 1.34224 * 119.99836 * 59.99768 * 4 2 1 7 7 C 1.45201 * 116.99933 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47248 * 180.02562 * 7 6 4 9 9 O 1.21275 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99743 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99727 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47165 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99977 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99745 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00010 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47424 * 90.00163 * 16 14 12 18 18 H 1.48506 * 109.46812 * 210.00050 * 16 14 12 19 19 H 1.48497 * 109.47216 * 329.99322 * 16 14 12 20 20 C 1.50695 * 109.47277 * 119.99760 * 2 1 3 21 21 C 1.38266 * 119.98923 * 359.95861 * 20 2 1 22 22 C 1.38226 * 120.05404 * 180.02562 * 21 20 2 23 23 C 1.38217 * 120.02522 * 0.03782 * 22 21 20 24 24 C 1.38434 * 119.97400 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.02897 * 180.02562 * 24 23 22 26 26 C 1.38176 * 119.98906 * 180.02562 * 20 2 1 27 27 H 1.09005 * 109.47039 * 299.99769 * 1 2 3 28 28 H 1.08991 * 109.47476 * 60.00011 * 1 2 3 29 29 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46656 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46959 * 299.99436 * 3 2 1 32 32 H 1.08993 * 109.47130 * 59.99861 * 3 2 1 33 33 H 1.09009 * 109.47013 * 300.00308 * 7 6 4 34 34 H 1.08998 * 109.47447 * 59.99522 * 7 6 4 35 35 H 0.96997 * 120.00377 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47137 * 300.00190 * 11 10 8 37 37 H 1.09003 * 109.47168 * 60.00033 * 11 10 8 38 38 H 0.96992 * 119.99907 * 180.02562 * 15 14 12 39 39 H 1.08008 * 119.97418 * 0.04219 * 21 20 2 40 40 H 1.07998 * 119.98497 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.01075 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.01219 * 0.24814 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7270 -1.6927 -1.1195 6 8 1.7080 -0.2518 -2.4495 7 6 2.2267 -0.9864 -3.5896 8 6 1.7628 -0.3291 -4.8639 9 8 1.0635 0.6605 -4.8160 10 7 2.1251 -0.8412 -6.0568 11 6 1.6736 -0.2026 -7.2956 12 6 2.2131 -0.9642 -8.4789 13 1 2.8301 -1.8369 -8.3237 14 6 1.9189 -0.5469 -9.7596 15 7 2.3893 -1.2118 -10.7923 16 14 0.8523 0.9629 -10.0281 17 1 1.7129 2.1709 -10.0987 18 1 0.0989 0.8169 -11.2995 19 1 -0.1032 1.1009 -8.8998 20 6 2.0324 -0.7103 1.2304 21 6 1.1337 -1.2349 2.1409 22 6 1.5930 -1.8863 3.2703 23 6 2.9515 -2.0132 3.4910 24 6 3.8523 -1.4882 2.5803 25 9 5.1804 -1.6120 2.7947 26 6 3.3909 -0.8359 1.4491 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9563 0.8899 33 1 3.3163 -0.9861 -3.5568 34 1 1.8626 -2.0132 -3.5565 35 1 2.6847 -1.6326 -6.0952 36 1 0.5841 -0.2034 -7.3286 37 1 2.0374 0.8244 -7.3285 38 1 2.1827 -0.9181 -11.6932 39 1 0.0719 -1.1359 1.9694 40 1 0.8901 -2.2960 3.9805 41 1 3.3102 -2.5225 4.3733 42 1 4.0927 -0.4217 0.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736876043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:26 Heat of formation + Delta-G solvation = -145.479689 kcal Electronic energy + Delta-G solvation = -26465.476299 eV Core-core repulsion = 22325.187176 eV Total energy + Delta-G solvation = -4140.289122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.15108 -41.26949 -39.60854 -38.77938 -36.52371 -35.73591 -34.40898 -32.45842 -31.23924 -30.29391 -29.45350 -27.76366 -27.23294 -24.67061 -23.27510 -22.64202 -21.98771 -20.18491 -20.12554 -18.07030 -17.57081 -17.38404 -16.88319 -16.63492 -16.52261 -16.21428 -15.88324 -15.63764 -15.23585 -14.88657 -14.66030 -14.23351 -14.17435 -13.81861 -13.47271 -13.33614 -12.96566 -12.85934 -12.65851 -12.45788 -12.40797 -12.35610 -12.16654 -12.10723 -12.07519 -11.43558 -11.23292 -11.09567 -10.86767 -10.77234 -10.50115 -10.02597 -9.57024 -9.39751 -9.32467 -9.03438 -8.84267 -8.30500 -6.26338 -4.29605 0.73211 0.86391 1.98389 2.26729 2.98651 3.22863 3.23966 3.30456 3.37724 3.73927 3.82368 4.07576 4.27430 4.28768 4.48845 4.56300 4.63285 4.66347 4.78517 5.00062 5.00403 5.07879 5.12621 5.18424 5.23852 5.28688 5.37212 5.38563 5.49949 5.66372 5.72301 5.77220 5.82521 5.95436 6.07067 6.21169 6.52150 6.69789 6.97789 7.05621 7.28867 7.53384 8.01759 8.38243 8.64702 8.76681 9.32516 10.85436 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002230 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.777631 B =12553.600674 C =13066.240256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.468 3.532 5 O -0.499 6.499 6 O -0.323 6.323 7 C 0.048 3.952 8 C 0.503 3.497 9 O -0.536 6.536 10 N -0.699 5.699 11 C 0.222 3.778 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.890 5.890 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.043 4.043 21 C -0.121 4.121 22 C -0.093 4.093 23 C -0.152 4.152 24 C 0.098 3.902 25 F -0.140 7.140 26 C -0.121 4.121 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 0.794 29.588 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.011 4.011 3 C -0.200 4.200 4 C 0.310 3.690 5 O -0.386 6.386 6 O -0.238 6.238 7 C -0.030 4.030 8 C 0.286 3.714 9 O -0.414 6.414 10 N -0.350 5.350 11 C 0.101 3.899 12 C -0.584 4.584 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.043 4.043 21 C -0.139 4.139 22 C -0.111 4.111 23 C -0.171 4.171 24 C 0.079 3.921 25 F -0.118 7.118 26 C -0.140 4.140 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.207 1.199 29.375 29.483 hybrid contribution 0.298 0.005 -0.426 0.520 sum -1.909 1.204 28.949 29.037 Atomic orbital electron populations 1.22011 0.90547 1.03434 1.04458 1.19353 0.98409 0.96287 0.87029 1.21949 1.01791 0.91831 1.04398 1.23476 0.77733 0.82942 0.84884 1.90701 1.35206 1.25480 1.87188 1.86536 1.68940 1.54463 1.13864 1.22854 1.00557 0.96238 0.83330 1.19900 0.81790 0.85159 0.84574 1.90695 1.37733 1.25713 1.87234 1.46075 1.51942 1.31422 1.05531 1.19556 0.95695 0.93857 0.80810 1.21063 1.33952 1.14353 0.89061 0.90129 1.24796 0.95300 0.96887 0.95622 1.69877 1.44423 1.39744 0.98681 0.86810 0.81320 0.83180 0.78347 1.19784 1.20829 1.18470 1.19144 0.92598 0.97937 0.94668 1.21230 1.00300 0.98127 0.94216 1.20977 0.94597 0.98081 0.97413 1.21185 0.93501 1.02319 1.00051 1.17625 0.77572 1.00841 0.96099 1.91509 1.31315 1.94210 1.94784 1.20928 0.96166 1.00314 0.96562 0.90331 0.89876 0.91462 0.91770 0.89850 0.90510 0.88314 0.88295 0.76697 0.95415 0.95873 0.92168 0.84527 0.84760 0.84736 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 7.06 37.16 0.26 -0.85 16 2 C -0.01 -0.09 0.80 -156.81 -0.12 -0.22 16 3 C -0.14 -1.16 8.22 37.16 0.31 -0.85 16 4 C 0.47 5.96 6.42 36.01 0.23 6.19 16 5 O -0.50 -7.33 14.86 -18.75 -0.28 -7.61 16 6 O -0.32 -4.65 9.56 -45.89 -0.44 -5.09 16 7 C 0.05 0.68 5.94 36.01 0.21 0.89 16 8 C 0.50 9.32 7.91 -10.98 -0.09 9.23 16 9 O -0.54 -11.96 16.50 -14.10 -0.23 -12.19 16 10 N -0.70 -13.63 5.55 -61.47 -0.34 -13.97 16 11 C 0.22 5.31 4.50 -5.19 -0.02 5.29 16 12 C -0.55 -14.67 9.83 -34.44 -0.34 -15.01 16 13 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 16 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 20 C -0.04 -0.41 4.38 -104.64 -0.46 -0.86 16 21 C -0.12 -0.91 8.97 -39.58 -0.36 -1.27 16 22 C -0.09 -0.63 10.04 -39.59 -0.40 -1.03 16 23 C -0.15 -1.22 10.03 -39.52 -0.40 -1.62 16 24 C 0.10 1.00 7.30 -39.42 -0.29 0.71 16 25 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 26 C -0.12 -1.26 7.91 -39.51 -0.31 -1.58 16 27 H 0.08 0.40 7.51 -51.93 -0.39 0.01 16 28 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 29 H 0.07 0.49 7.51 -51.93 -0.39 0.10 16 30 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 31 H 0.08 0.74 8.11 -51.93 -0.42 0.31 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 1.23 8.13 -51.92 -0.42 0.81 16 34 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.40 6.73 8.32 -40.82 -0.34 6.39 16 36 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 37 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.14 0.74 5.89 -52.48 -0.31 0.43 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.13 1.40 7.51 -52.49 -0.39 1.01 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -33.57 362.51 -7.06 -40.63 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.51 Total: 2.14 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.87 Total: 1.12 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.43 Total: -39.27 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.95 Total: -24.90 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.57 -7.06 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736876043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.852 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds