Wall clock time and date at job start Tue Mar 31 2020 13:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46702 * 2 1 4 4 C 1.50702 * 109.47091 * 240.00012 * 2 1 3 5 5 O 1.20823 * 119.99404 * 239.99530 * 4 2 1 6 6 O 1.34224 * 119.99836 * 59.99768 * 4 2 1 7 7 C 1.45201 * 116.99933 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47248 * 180.02562 * 7 6 4 9 9 O 1.21275 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99743 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99727 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47165 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99977 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99745 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00010 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47424 * 90.00163 * 16 14 12 18 18 H 1.48506 * 109.46812 * 210.00050 * 16 14 12 19 19 H 1.48497 * 109.47216 * 329.99322 * 16 14 12 20 20 C 1.50695 * 109.47277 * 119.99760 * 2 1 3 21 21 C 1.38266 * 119.98923 * 359.95861 * 20 2 1 22 22 C 1.38226 * 120.05404 * 180.02562 * 21 20 2 23 23 C 1.38217 * 120.02522 * 0.03782 * 22 21 20 24 24 C 1.38434 * 119.97400 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.02897 * 180.02562 * 24 23 22 26 26 C 1.38176 * 119.98906 * 180.02562 * 20 2 1 27 27 H 1.09005 * 109.47039 * 299.99769 * 1 2 3 28 28 H 1.08991 * 109.47476 * 60.00011 * 1 2 3 29 29 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46656 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46959 * 299.99436 * 3 2 1 32 32 H 1.08993 * 109.47130 * 59.99861 * 3 2 1 33 33 H 1.09009 * 109.47013 * 300.00308 * 7 6 4 34 34 H 1.08998 * 109.47447 * 59.99522 * 7 6 4 35 35 H 0.96997 * 120.00377 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47137 * 300.00190 * 11 10 8 37 37 H 1.09003 * 109.47168 * 60.00033 * 11 10 8 38 38 H 0.96992 * 119.99907 * 180.02562 * 15 14 12 39 39 H 1.08008 * 119.97418 * 0.04219 * 21 20 2 40 40 H 1.07998 * 119.98497 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.01075 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.01219 * 0.24814 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7270 -1.6927 -1.1195 6 8 1.7080 -0.2518 -2.4495 7 6 2.2267 -0.9864 -3.5896 8 6 1.7628 -0.3291 -4.8639 9 8 1.0635 0.6605 -4.8160 10 7 2.1251 -0.8412 -6.0568 11 6 1.6736 -0.2026 -7.2956 12 6 2.2131 -0.9642 -8.4789 13 1 2.8301 -1.8369 -8.3237 14 6 1.9189 -0.5469 -9.7596 15 7 2.3893 -1.2118 -10.7923 16 14 0.8523 0.9629 -10.0281 17 1 1.7129 2.1709 -10.0987 18 1 0.0989 0.8169 -11.2995 19 1 -0.1032 1.1009 -8.8998 20 6 2.0324 -0.7103 1.2304 21 6 1.1337 -1.2349 2.1409 22 6 1.5930 -1.8863 3.2703 23 6 2.9515 -2.0132 3.4910 24 6 3.8523 -1.4882 2.5803 25 9 5.1804 -1.6120 2.7947 26 6 3.3909 -0.8359 1.4491 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9563 0.8899 33 1 3.3163 -0.9861 -3.5568 34 1 1.8626 -2.0132 -3.5565 35 1 2.6847 -1.6326 -6.0952 36 1 0.5841 -0.2034 -7.3286 37 1 2.0374 0.8244 -7.3285 38 1 2.1827 -0.9181 -11.6932 39 1 0.0719 -1.1359 1.9694 40 1 0.8901 -2.2960 3.9805 41 1 3.3102 -2.5225 4.3733 42 1 4.0927 -0.4217 0.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736876043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:25 Heat of formation + Delta-G solvation = -165.783637 kcal Electronic energy + Delta-G solvation = -26466.356744 eV Core-core repulsion = 22325.187176 eV Total energy + Delta-G solvation = -4141.169568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.92611 -42.21397 -40.73120 -39.96084 -37.61167 -36.46727 -36.21169 -34.47144 -31.86866 -31.29088 -30.67957 -28.86366 -28.36151 -25.48936 -24.32406 -23.73923 -23.19334 -21.74869 -21.01045 -19.42551 -18.60174 -18.57879 -17.99339 -17.81388 -17.38211 -17.14606 -16.95109 -16.77193 -16.56529 -16.25472 -15.95781 -15.36410 -14.93133 -14.90356 -14.67371 -14.42238 -14.37566 -14.08576 -13.88197 -13.59071 -13.31579 -13.18813 -13.09219 -13.06530 -12.81116 -12.71404 -12.69215 -12.07350 -11.94666 -11.93366 -11.86440 -11.68345 -11.44690 -10.97815 -10.92969 -10.05564 -9.96944 -9.69120 -8.40611 -6.48522 0.08299 0.22341 1.00334 1.21573 1.33810 1.36750 1.47538 1.49976 2.27821 2.39380 2.66612 2.94708 3.06547 3.41164 3.54630 3.64814 3.72770 3.86051 3.96782 4.01132 4.01833 4.10636 4.21305 4.41202 4.65618 4.70932 4.72682 4.77252 4.78609 4.91310 4.99696 5.06213 5.10272 5.15693 5.19624 5.22213 5.24867 5.38240 5.38535 5.45588 5.90671 6.04540 6.49430 6.53033 6.70364 7.10028 7.25265 8.73988 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002230 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.777631 B =12553.600674 C =13066.240256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.006 4.006 3 C -0.141 4.141 4 C 0.467 3.533 5 O -0.522 6.522 6 O -0.336 6.336 7 C 0.055 3.945 8 C 0.507 3.493 9 O -0.574 6.574 10 N -0.698 5.698 11 C 0.233 3.767 12 C -0.549 4.549 13 H 0.060 0.940 14 C 0.025 3.975 15 N -0.931 5.931 16 Si 0.939 3.061 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.257 1.257 20 C -0.055 4.055 21 C -0.117 4.117 22 C -0.086 4.086 23 C -0.151 4.151 24 C 0.071 3.929 25 F -0.153 7.153 26 C -0.139 4.139 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.412 0.588 36 H 0.019 0.981 37 H 0.017 0.983 38 H 0.273 0.727 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.154 0.846 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 1.080 31.948 32.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.007 4.007 3 C -0.198 4.198 4 C 0.311 3.689 5 O -0.410 6.410 6 O -0.252 6.252 7 C -0.021 4.021 8 C 0.292 3.708 9 O -0.454 6.454 10 N -0.349 5.349 11 C 0.110 3.890 12 C -0.587 4.587 13 H 0.078 0.922 14 C -0.175 4.175 15 N -0.570 5.570 16 Si 0.762 3.238 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.181 1.181 20 C -0.055 4.055 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.170 4.170 24 C 0.052 3.948 25 F -0.132 7.132 26 C -0.158 4.158 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.248 0.752 36 H 0.037 0.963 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.181 0.819 40 H 0.187 0.813 41 H 0.171 0.829 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.888 1.466 31.758 32.029 hybrid contribution 0.861 -0.154 -1.089 1.397 sum -3.027 1.312 30.669 30.846 Atomic orbital electron populations 1.22064 0.88778 1.04034 1.05411 1.19485 0.99685 0.96304 0.85273 1.21963 1.01451 0.91307 1.05079 1.24238 0.77038 0.82722 0.84938 1.90688 1.36291 1.26689 1.87313 1.86543 1.69285 1.54887 1.14443 1.22731 1.01569 0.96401 0.81446 1.20489 0.80535 0.84392 0.85343 1.90674 1.39384 1.27476 1.87850 1.45877 1.52316 1.31864 1.04878 1.19175 0.94895 0.93329 0.81643 1.21273 1.33278 1.13834 0.90286 0.92186 1.25623 0.96620 0.99789 0.95486 1.69984 1.46065 1.41599 0.99304 0.85839 0.79754 0.79709 0.78501 1.18973 1.19920 1.18119 1.19220 0.92381 0.98754 0.95125 1.21596 1.01316 0.96878 0.93670 1.21412 0.94516 0.96890 0.97554 1.21503 0.93885 1.01591 1.00015 1.17936 0.77459 1.02327 0.97104 1.91466 1.32363 1.94469 1.94923 1.20942 0.96772 1.01297 0.96788 0.87332 0.91005 0.91013 0.92437 0.90739 0.88164 0.86355 0.86135 0.75185 0.96339 0.96539 0.91814 0.81901 0.81271 0.82873 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 7.06 71.98 0.51 -1.32 16 2 C -0.01 -0.11 0.80 -53.67 -0.04 -0.15 16 3 C -0.14 -2.15 8.22 71.98 0.59 -1.55 16 4 C 0.47 11.53 6.42 71.24 0.46 11.99 16 5 O -0.52 -15.06 14.86 21.97 0.33 -14.73 16 6 O -0.34 -9.41 9.56 -45.00 -0.43 -9.84 16 7 C 0.06 1.51 5.94 71.24 0.42 1.94 16 8 C 0.51 18.44 7.91 87.66 0.69 19.13 16 9 O -0.57 -25.43 16.50 15.78 0.26 -25.17 16 10 N -0.70 -26.89 5.55 -466.79 -2.59 -29.48 16 11 C 0.23 11.08 4.50 85.63 0.38 11.47 16 12 C -0.55 -29.72 9.83 25.60 0.25 -29.47 16 13 H 0.06 3.42 7.84 -2.91 -0.02 3.39 16 14 C 0.03 1.41 5.47 84.65 0.46 1.87 16 15 N -0.93 -55.08 13.96 21.45 0.30 -54.78 16 16 Si 0.94 43.18 27.47 68.60 1.88 45.06 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 20 C -0.05 -0.94 4.38 -19.87 -0.09 -1.02 16 21 C -0.12 -1.38 8.97 22.27 0.20 -1.18 16 22 C -0.09 -0.87 10.04 22.26 0.22 -0.65 16 23 C -0.15 -2.12 10.03 22.31 0.22 -1.90 16 24 C 0.07 1.42 7.30 22.38 0.16 1.59 16 25 F -0.15 -3.53 17.27 44.97 0.78 -2.75 16 26 C -0.14 -2.90 7.91 22.31 0.18 -2.72 16 27 H 0.11 0.70 7.51 -2.38 -0.02 0.68 16 28 H 0.07 1.09 8.11 -2.39 -0.02 1.07 16 29 H 0.07 0.84 7.51 -2.38 -0.02 0.82 16 30 H 0.06 0.93 7.38 -2.39 -0.02 0.92 16 31 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.12 2.80 8.13 -2.38 -0.02 2.78 16 34 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 35 H 0.41 13.69 8.32 -92.71 -0.77 12.92 16 36 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 37 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.16 1.02 5.89 -2.91 -0.02 1.00 16 40 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.12 2.66 7.51 -2.91 -0.02 2.64 16 Total: -1.00 -73.37 362.51 5.39 -67.98 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.23 Total: 15.69 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.63 Total: 8.02 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.29 Total: -84.26 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: 0.16 Total: -49.74 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -73.37 5.39 -67.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736876043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.803 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds