Wall clock time and date at job start Tue Mar 31 2020 14:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 C 1.53007 * 109.47172 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.42895 * 114.00049 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47368 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46662 * 64.99885 * 7 6 5 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47334 * 89.99556 * 22 20 18 24 24 H 1.48501 * 109.47313 * 210.00161 * 22 20 18 25 25 H 1.48500 * 109.46994 * 329.99936 * 22 20 18 26 26 H 1.09005 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47370 * 299.99739 * 1 2 3 28 28 H 1.09000 * 109.47077 * 60.00103 * 1 2 3 29 29 H 1.08999 * 109.47370 * 240.00261 * 2 1 3 30 30 H 1.09002 * 109.47616 * 120.00432 * 2 1 3 31 31 H 1.08997 * 109.47383 * 60.00478 * 3 2 1 32 32 H 1.08995 * 109.47387 * 300.00249 * 3 2 1 33 33 H 1.08999 * 109.47274 * 60.00211 * 4 3 2 34 34 H 1.09000 * 109.46995 * 299.99956 * 4 3 2 35 35 H 1.08998 * 109.47464 * 59.99650 * 6 5 4 36 36 H 1.09001 * 109.47206 * 299.99466 * 6 5 4 37 37 H 1.09000 * 109.47129 * 305.00237 * 7 6 5 38 38 H 1.09003 * 109.47146 * 184.99850 * 7 6 5 39 39 H 0.97003 * 120.00826 * 359.97438 * 8 7 6 40 40 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 41 41 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 42 42 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 44 44 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4707 2.9027 0.0013 7 6 5.8653 4.3810 0.0013 8 7 5.4271 5.0033 1.2531 9 6 5.6678 6.3105 1.4761 10 8 6.2482 6.9736 0.6380 11 6 5.2263 6.9370 2.7356 12 6 4.5579 6.1800 3.7006 13 6 4.1473 6.7715 4.8756 14 6 4.3933 8.1163 5.1071 15 6 5.0510 8.8786 4.1646 16 6 5.4735 8.3000 2.9722 17 16 6.3147 9.2703 1.7658 18 6 6.5155 10.7715 2.6663 19 1 6.2254 10.8208 3.7055 20 6 7.0465 11.8907 2.0402 21 7 7.4003 11.8306 0.7745 22 14 7.2600 13.4819 2.9951 23 1 8.6041 13.5041 3.6260 24 1 7.1283 14.6360 2.0698 25 1 6.2172 13.5707 4.0486 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 5.8736 2.4195 -0.8888 36 1 5.8735 2.4189 0.8911 37 1 5.3894 4.8841 -0.8405 38 1 6.9481 4.4681 -0.0882 39 1 4.9631 4.4747 1.9212 40 1 4.3666 5.1312 3.5278 41 1 3.6303 6.1843 5.6202 42 1 4.0676 8.5697 6.0316 43 1 5.2383 9.9255 4.3525 44 1 7.7710 12.6128 0.3369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742441245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:06 Heat of formation + Delta-G solvation = -73.053713 kcal Electronic energy + Delta-G solvation = -23903.611770 eV Core-core repulsion = 20332.676450 eV Total energy + Delta-G solvation = -3570.935320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.49963 -38.41085 -37.36237 -35.49824 -34.21219 -32.72190 -31.10456 -30.23089 -29.79743 -28.30658 -25.79250 -23.83394 -23.50608 -22.30017 -21.75890 -21.31934 -20.09299 -18.18578 -17.15793 -16.91111 -16.69328 -15.83579 -15.70546 -15.16037 -15.00709 -14.75060 -14.57097 -14.24730 -13.90162 -13.67546 -13.58015 -13.16931 -12.94727 -12.76034 -12.64754 -12.52370 -11.86285 -11.79261 -11.55901 -11.53843 -11.32603 -11.18663 -11.17469 -11.14816 -10.98319 -10.90154 -10.29502 -9.89526 -9.76620 -9.59727 -9.45842 -8.72818 -8.68177 -8.28432 -8.02167 -6.49548 -6.43013 -4.13254 1.58233 2.06106 3.12719 3.14930 3.21491 3.32976 3.45300 3.58113 3.61086 4.09462 4.53887 4.55715 4.59749 4.73474 4.88527 4.91403 4.97765 5.01626 5.08737 5.16650 5.17166 5.26009 5.37954 5.43084 5.46203 5.46777 5.53048 5.63868 5.72236 5.77053 5.87720 5.89590 5.97152 6.04613 6.16271 6.42999 6.63777 6.79342 6.89598 6.97235 7.07222 7.17224 7.48020 7.63059 7.97916 8.19310 8.85466 9.03085 10.60242 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.002494 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.040496 B =11223.623468 C =12068.177750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.121 4.121 4 C 0.061 3.939 5 O -0.384 6.384 6 C 0.051 3.949 7 C 0.126 3.874 8 N -0.733 5.733 9 C 0.552 3.448 10 O -0.511 6.511 11 C -0.176 4.176 12 C -0.060 4.060 13 C -0.187 4.187 14 C -0.077 4.077 15 C -0.154 4.154 16 C -0.057 4.057 17 S 0.183 5.817 18 C -0.595 4.595 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.858 5.858 22 Si 0.919 3.081 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.397 0.603 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 -21.746 1.232 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.303 6.303 6 C -0.025 4.025 7 C 0.002 3.998 8 N -0.389 5.389 9 C 0.341 3.659 10 O -0.389 6.389 11 C -0.191 4.191 12 C -0.080 4.080 13 C -0.212 4.212 14 C -0.099 4.099 15 C -0.179 4.179 16 C -0.177 4.177 17 S 0.448 5.552 18 C -0.742 4.742 19 H 0.108 0.892 20 C -0.128 4.128 21 N -0.491 5.491 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.193 1.193 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.466 -20.969 -0.962 22.279 hybrid contribution -0.382 0.692 2.243 2.378 sum -7.848 -20.277 1.281 21.781 Atomic orbital electron populations 1.21757 0.95379 1.01673 1.02181 1.21439 0.96319 0.96082 1.02082 1.21561 0.93458 0.97150 1.03663 1.22521 0.95218 0.83839 0.99973 1.87963 1.20791 1.26153 1.95406 1.22792 0.81773 0.96959 1.01018 1.21266 0.99967 0.90379 0.88210 1.45743 1.62159 1.10660 1.20289 1.18312 0.79390 0.81180 0.87030 1.90780 1.40887 1.61379 1.45820 1.19117 1.10233 0.93508 0.96237 1.20900 0.95969 0.97795 0.93366 1.20630 1.06831 0.95481 0.98243 1.21081 0.96817 0.93986 0.98055 1.21429 1.01442 1.01144 0.93859 1.23091 0.98201 0.96259 1.00108 1.84770 1.55818 1.02619 1.12024 1.24061 1.49188 0.99791 1.01144 0.89170 1.25101 0.93630 0.99156 0.94931 1.69981 1.37879 1.31078 1.10142 0.86148 0.79056 0.80774 0.79560 1.19902 1.20503 1.19253 0.92674 0.92501 0.92565 0.91948 0.91893 0.90948 0.91038 0.93489 0.93447 0.91841 0.92685 0.90735 0.90063 0.76800 0.87183 0.87120 0.87050 0.84388 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.15 0.37 -0.50 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.92 5.58 -26.73 -0.15 -1.06 16 4 C 0.06 0.49 5.94 37.16 0.22 0.71 16 5 O -0.38 -4.15 10.29 -35.23 -0.36 -4.51 16 6 C 0.05 0.48 6.07 37.16 0.23 0.71 16 7 C 0.13 1.61 6.06 -4.04 -0.02 1.59 16 8 N -0.73 -10.99 5.45 -61.38 -0.33 -11.33 16 9 C 0.55 11.04 7.75 -12.51 -0.10 10.95 16 10 O -0.51 -12.23 13.77 5.27 0.07 -12.16 16 11 C -0.18 -3.58 5.89 -104.75 -0.62 -4.19 16 12 C -0.06 -0.99 9.53 -39.20 -0.37 -1.36 16 13 C -0.19 -2.96 10.02 -39.58 -0.40 -3.36 16 14 C -0.08 -1.35 10.03 -39.55 -0.40 -1.74 16 15 C -0.15 -3.27 9.22 -39.38 -0.36 -3.64 16 16 C -0.06 -1.32 6.14 -38.39 -0.24 -1.56 16 17 S 0.18 5.00 18.56 -107.50 -2.00 3.01 16 18 C -0.60 -16.61 9.00 30.94 0.28 -16.33 16 19 H 0.09 2.39 4.98 -52.48 -0.26 2.12 16 20 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 21 N -0.86 -24.99 13.22 55.49 0.73 -24.25 16 22 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.40 5.00 6.50 -40.82 -0.27 4.73 16 40 H 0.11 1.40 6.40 -52.49 -0.34 1.07 16 41 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.14 3.06 5.04 -52.49 -0.26 2.79 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -32.70 377.94 -9.63 -42.33 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.60 Total: 3.84 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.82 Total: -18.49 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.40 Total: -35.58 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.29 Total: -16.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -2.00 Total: 3.01 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.70 -9.63 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742441245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.725 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds