Wall clock time and date at job start Tue Mar 31 2020 14:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 C 1.53007 * 109.47172 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.42895 * 114.00049 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47368 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46662 * 64.99885 * 7 6 5 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47334 * 89.99556 * 22 20 18 24 24 H 1.48501 * 109.47313 * 210.00161 * 22 20 18 25 25 H 1.48500 * 109.46994 * 329.99936 * 22 20 18 26 26 H 1.09005 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47370 * 299.99739 * 1 2 3 28 28 H 1.09000 * 109.47077 * 60.00103 * 1 2 3 29 29 H 1.08999 * 109.47370 * 240.00261 * 2 1 3 30 30 H 1.09002 * 109.47616 * 120.00432 * 2 1 3 31 31 H 1.08997 * 109.47383 * 60.00478 * 3 2 1 32 32 H 1.08995 * 109.47387 * 300.00249 * 3 2 1 33 33 H 1.08999 * 109.47274 * 60.00211 * 4 3 2 34 34 H 1.09000 * 109.46995 * 299.99956 * 4 3 2 35 35 H 1.08998 * 109.47464 * 59.99650 * 6 5 4 36 36 H 1.09001 * 109.47206 * 299.99466 * 6 5 4 37 37 H 1.09000 * 109.47129 * 305.00237 * 7 6 5 38 38 H 1.09003 * 109.47146 * 184.99850 * 7 6 5 39 39 H 0.97003 * 120.00826 * 359.97438 * 8 7 6 40 40 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 41 41 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 42 42 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 44 44 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4707 2.9027 0.0013 7 6 5.8653 4.3810 0.0013 8 7 5.4271 5.0033 1.2531 9 6 5.6678 6.3105 1.4761 10 8 6.2482 6.9736 0.6380 11 6 5.2263 6.9370 2.7356 12 6 4.5579 6.1800 3.7006 13 6 4.1473 6.7715 4.8756 14 6 4.3933 8.1163 5.1071 15 6 5.0510 8.8786 4.1646 16 6 5.4735 8.3000 2.9722 17 16 6.3147 9.2703 1.7658 18 6 6.5155 10.7715 2.6663 19 1 6.2254 10.8208 3.7055 20 6 7.0465 11.8907 2.0402 21 7 7.4003 11.8306 0.7745 22 14 7.2600 13.4819 2.9951 23 1 8.6041 13.5041 3.6260 24 1 7.1283 14.6360 2.0698 25 1 6.2172 13.5707 4.0486 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 5.8736 2.4195 -0.8888 36 1 5.8735 2.4189 0.8911 37 1 5.3894 4.8841 -0.8405 38 1 6.9481 4.4681 -0.0882 39 1 4.9631 4.4747 1.9212 40 1 4.3666 5.1312 3.5278 41 1 3.6303 6.1843 5.6202 42 1 4.0676 8.5697 6.0316 43 1 5.2383 9.9255 4.3525 44 1 7.7710 12.6128 0.3369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742441245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:05 Heat of formation + Delta-G solvation = -94.370006 kcal Electronic energy + Delta-G solvation = -23904.536114 eV Core-core repulsion = 20332.676450 eV Total energy + Delta-G solvation = -3571.859664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98760 -39.30677 -38.79486 -36.28425 -35.32296 -34.75772 -32.48564 -31.77700 -30.68478 -29.17881 -27.83390 -25.05817 -24.16887 -23.59151 -23.07609 -21.88892 -21.62860 -19.94853 -18.78039 -17.70870 -17.56878 -17.28356 -17.03456 -16.79160 -16.05870 -15.99916 -15.71273 -15.42435 -15.29542 -15.15032 -14.67801 -14.36487 -14.32727 -13.85402 -13.64142 -13.38901 -13.28081 -13.18272 -12.98181 -12.87634 -12.54940 -12.41246 -12.23847 -12.04104 -11.86790 -11.78912 -11.51021 -11.47489 -11.40073 -11.25973 -10.54198 -10.41058 -10.12406 -9.90329 -9.74691 -8.45897 -8.44394 -6.23570 0.04774 0.54561 1.26842 1.36719 1.45381 1.65275 2.03533 2.18206 2.31124 2.66400 2.88232 3.05423 3.25859 3.85630 3.98143 4.03609 4.04157 4.17689 4.21510 4.25964 4.27653 4.44316 4.48726 4.54770 4.62340 4.63176 4.69666 4.73733 4.85451 4.90971 4.96600 4.98974 5.07932 5.12069 5.27679 5.37234 5.38412 5.46230 5.47535 5.52241 5.58304 5.67947 6.10718 6.17142 6.28585 6.65271 6.96397 7.38111 8.61138 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.002494 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.040496 B =11223.623468 C =12068.177750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.120 4.120 4 C 0.058 3.942 5 O -0.410 6.410 6 C 0.061 3.939 7 C 0.120 3.880 8 N -0.710 5.710 9 C 0.544 3.456 10 O -0.559 6.559 11 C -0.182 4.182 12 C -0.054 4.054 13 C -0.157 4.157 14 C -0.070 4.070 15 C -0.175 4.175 16 C -0.073 4.073 17 S 0.062 5.938 18 C -0.601 4.601 19 H 0.095 0.905 20 C 0.022 3.978 21 N -0.905 5.905 22 Si 0.995 3.005 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.257 1.257 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.412 0.588 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.119 0.881 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -25.026 4.461 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.158 4.158 4 C -0.018 4.018 5 O -0.330 6.330 6 C -0.015 4.015 7 C -0.003 4.003 8 N -0.364 5.364 9 C 0.332 3.668 10 O -0.439 6.439 11 C -0.195 4.195 12 C -0.074 4.074 13 C -0.180 4.180 14 C -0.090 4.090 15 C -0.200 4.200 16 C -0.191 4.191 17 S 0.321 5.679 18 C -0.748 4.748 19 H 0.112 0.888 20 C -0.183 4.183 21 N -0.540 5.540 22 Si 0.816 3.184 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.181 1.181 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.250 0.750 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.168 0.832 43 H 0.137 0.863 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.350 -24.372 2.336 26.208 hybrid contribution -0.031 1.315 1.399 1.920 sum -9.382 -23.057 3.735 25.171 Atomic orbital electron populations 1.21777 0.95418 1.02157 1.01839 1.21417 0.96265 0.94999 1.02814 1.21563 0.93530 0.98060 1.02619 1.22676 0.95163 0.82689 1.01267 1.87924 1.21328 1.28068 1.95689 1.22733 0.81592 0.94038 1.03169 1.21423 0.99878 0.92658 0.86348 1.45581 1.60650 1.08959 1.21220 1.18533 0.79022 0.82541 0.86669 1.90779 1.43039 1.62835 1.47260 1.19504 1.09867 0.92754 0.97362 1.21425 0.93950 0.99701 0.92293 1.21324 1.03577 0.94805 0.98290 1.21544 0.94660 0.94691 0.98149 1.21450 1.03082 1.01029 0.94443 1.22999 0.99411 0.97045 0.99687 1.84942 1.61535 1.05235 1.16192 1.24248 1.49389 0.99909 1.01253 0.88775 1.26176 0.93294 1.02912 0.95940 1.70138 1.39759 1.32063 1.12062 0.85016 0.79339 0.75924 0.78157 1.19092 1.19799 1.18112 0.91784 0.92754 0.93050 0.91347 0.90976 0.91727 0.92384 0.92435 0.91809 0.89694 0.90407 0.92891 0.90089 0.74996 0.82479 0.81634 0.83197 0.86313 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.12 5.93 30.59 0.18 -0.93 16 3 C -0.12 -1.59 5.58 30.60 0.17 -1.42 16 4 C 0.06 0.76 5.94 71.98 0.43 1.19 16 5 O -0.41 -7.86 10.29 -148.98 -1.53 -9.39 16 6 C 0.06 0.98 6.07 71.98 0.44 1.42 16 7 C 0.12 3.01 6.06 86.38 0.52 3.53 16 8 N -0.71 -20.29 5.45 -466.34 -2.54 -22.83 16 9 C 0.54 22.09 7.75 86.66 0.67 22.76 16 10 O -0.56 -28.52 13.77 -4.05 -0.06 -28.58 16 11 C -0.18 -7.26 5.89 -19.95 -0.12 -7.38 16 12 C -0.05 -1.52 9.53 22.52 0.21 -1.30 16 13 C -0.16 -3.98 10.02 22.27 0.22 -3.76 16 14 C -0.07 -2.14 10.03 22.29 0.22 -1.92 16 15 C -0.17 -7.43 9.22 22.40 0.21 -7.23 16 16 C -0.07 -3.54 6.14 23.04 0.14 -3.40 16 17 S 0.06 3.68 18.56 -56.49 -1.05 2.64 16 18 C -0.60 -35.76 9.00 67.96 0.61 -35.15 16 19 H 0.09 5.27 4.98 -2.91 -0.01 5.26 16 20 C 0.02 1.30 5.49 84.87 0.47 1.76 16 21 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 22 Si 0.99 44.58 29.55 68.60 2.03 46.61 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.41 8.94 6.50 -92.71 -0.60 8.33 16 40 H 0.16 2.97 6.40 -2.91 -0.02 2.95 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 42 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 43 H 0.12 5.45 5.04 -2.91 -0.01 5.43 16 44 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -80.53 377.94 2.63 -77.91 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.40 Total: 22.28 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 5.09 Total: -32.60 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -2.26 Total: -78.87 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.59 Total: -37.97 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.05 Total: 2.64 kcal Total: -80.53 2.63 -77.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742441245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.464 kcal (2) G-P(sol) polarization free energy of solvation -80.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds