Wall clock time and date at job start Tue Mar 31 2020 14:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47220 * 2 1 4 4 C 1.53002 * 109.47106 * 119.99860 * 2 1 3 5 5 C 1.50696 * 109.47189 * 240.00159 * 2 1 3 6 6 N 1.29370 * 124.67574 * 59.69601 * 5 2 1 7 7 C 1.30929 * 117.50202 * 179.83559 * 6 5 2 8 8 C 1.37119 * 113.84079 * 0.44839 * 7 6 5 9 9 C 1.41649 * 126.19639 * 179.74764 * 8 7 6 10 10 C 1.35688 * 120.00117 * 131.92445 * 9 8 7 11 11 C 1.41289 * 120.00022 * 345.29085 * 10 9 8 12 12 O 1.21705 * 120.00101 * 353.34675 * 11 10 9 13 13 O 1.34987 * 120.00082 * 173.34220 * 11 10 9 14 14 C 1.42903 * 117.00346 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47174 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.46843 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47130 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99584 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00169 * 179.97438 * 17 16 15 20 20 N 1.31505 * 119.99632 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47352 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46787 * 120.00118 * 21 19 17 24 24 H 1.48503 * 109.46992 * 239.99970 * 21 19 17 25 25 S 1.70924 * 124.67090 * 240.00011 * 5 2 1 26 26 H 1.08997 * 109.47324 * 60.00182 * 1 2 3 27 27 H 1.09003 * 109.47332 * 300.00042 * 1 2 3 28 28 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47003 * 59.99756 * 3 2 1 30 30 H 1.08997 * 109.47497 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46824 * 300.00124 * 3 2 1 32 32 H 1.09002 * 109.46903 * 60.00393 * 4 2 1 33 33 H 1.09000 * 109.46927 * 179.97438 * 4 2 1 34 34 H 1.08990 * 109.47192 * 300.00051 * 4 2 1 35 35 H 1.07998 * 123.08032 * 180.21043 * 7 6 5 36 36 H 1.08004 * 119.99694 * 311.92811 * 9 8 7 37 37 H 1.07996 * 119.99694 * 165.28882 * 10 9 8 38 38 H 1.09002 * 109.46874 * 300.00522 * 14 13 11 39 39 H 1.09000 * 109.47194 * 60.00067 * 14 13 11 40 40 H 1.08995 * 109.46628 * 299.99786 * 15 14 13 41 41 H 1.08996 * 109.47146 * 60.00138 * 15 14 13 42 42 H 1.09009 * 109.46721 * 299.99479 * 16 15 14 43 43 H 1.08999 * 109.47096 * 59.99295 * 16 15 14 44 44 H 0.97010 * 119.99859 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2304 6 7 1.7715 -0.3513 -2.4456 7 6 2.2850 -1.0702 -3.4119 8 6 3.0355 -2.1312 -2.9747 9 6 3.7029 -3.0767 -3.7914 10 6 4.9983 -3.3942 -3.5419 11 6 5.7737 -2.5786 -2.6875 12 8 5.3201 -1.5284 -2.2721 13 8 7.0174 -2.9643 -2.3318 14 6 7.7445 -2.0912 -1.4651 15 6 9.1220 -2.6910 -1.1755 16 6 9.9001 -1.7565 -0.2470 17 6 11.2566 -2.3475 0.0387 18 1 11.5356 -3.2951 -0.3980 19 6 12.1415 -1.6785 0.8576 20 7 11.8015 -0.5250 1.3897 21 14 13.8227 -2.4115 1.2122 22 1 13.9579 -3.7076 0.5001 23 1 14.8784 -1.4772 0.7456 24 1 13.9680 -2.6327 2.6735 25 16 3.0190 -2.1059 -1.2128 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 -1.7489 1.2492 33 1 3.1299 -0.7216 1.2490 34 1 1.6766 -0.2074 2.1392 35 1 2.1285 -0.8501 -4.4576 36 1 3.1807 -3.5449 -4.6127 37 1 5.4367 -4.2703 -3.9964 38 1 7.8650 -1.1202 -1.9453 39 1 7.1973 -1.9689 -0.5303 40 1 9.0017 -3.6621 -0.6955 41 1 9.6689 -2.8130 -2.1104 42 1 10.0203 -0.7851 -0.7267 43 1 9.3529 -1.6349 0.6878 44 1 12.4239 -0.0545 1.9661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744141007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:41 Heat of formation + Delta-G solvation = -44.017156 kcal Electronic energy + Delta-G solvation = -24346.287103 eV Core-core repulsion = 20776.610902 eV Total energy + Delta-G solvation = -3569.676201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51472 -39.85049 -37.32287 -36.54592 -34.22261 -33.96026 -31.69885 -29.45993 -27.69638 -27.49463 -27.22370 -25.91782 -24.09101 -22.63320 -21.33394 -20.50138 -20.14504 -18.94548 -17.71481 -17.54497 -16.55492 -16.33083 -15.98029 -15.25827 -15.10635 -14.60530 -14.49535 -14.33172 -14.08389 -13.98743 -13.60079 -13.47043 -12.82046 -12.50737 -12.44161 -12.21836 -12.18781 -11.93119 -11.84447 -11.74886 -11.58899 -11.30762 -11.20969 -10.98743 -10.74458 -10.62012 -10.52220 -10.34797 -10.10372 -9.70915 -9.57629 -9.50990 -9.14372 -8.79877 -8.47818 -8.38968 -6.03470 -4.06286 -0.06976 1.09369 1.44179 1.77417 2.71194 3.06986 3.17414 3.29876 3.37332 3.41869 3.86046 4.43727 4.49580 4.63796 4.65801 4.77680 4.87979 5.08795 5.15984 5.22274 5.29159 5.32610 5.38398 5.48522 5.60693 5.60838 5.64684 5.66948 5.68254 5.74369 5.79408 5.85959 5.98098 6.05842 6.07294 6.16636 6.53277 6.55946 6.88036 7.00354 7.61163 7.66484 7.72287 7.94859 7.97720 8.36712 9.00248 9.57994 11.08033 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.002615 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.403534 B =10704.534861 C =12006.937248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 C -0.134 4.134 4 C -0.158 4.158 5 C 0.048 3.952 6 N -0.478 5.478 7 C 0.075 3.925 8 C -0.237 4.237 9 C 0.028 3.972 10 C -0.193 4.193 11 C 0.479 3.521 12 O -0.501 6.501 13 O -0.350 6.350 14 C 0.068 3.932 15 C -0.108 4.108 16 C 0.024 3.976 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 S 0.209 5.791 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.242 -3.335 -6.984 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.005 3.995 3 C -0.193 4.193 4 C -0.216 4.216 5 C -0.226 4.226 6 N -0.191 5.191 7 C -0.081 4.081 8 C -0.358 4.358 9 C 0.007 3.993 10 C -0.215 4.215 11 C 0.326 3.674 12 O -0.393 6.393 13 O -0.266 6.266 14 C -0.006 4.006 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 S 0.472 5.528 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.192 0.808 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.181 -3.030 -5.926 26.046 hybrid contribution 1.076 0.023 -0.801 1.342 sum -24.105 -3.007 -6.727 25.206 Atomic orbital electron populations 1.21826 0.92379 1.02158 1.02717 1.19243 0.96426 0.95411 0.88371 1.21839 1.01676 0.93227 1.02572 1.22060 1.02231 1.00466 0.96804 1.27209 1.00269 0.98461 0.96630 1.65795 1.24249 1.30505 0.98543 1.22309 0.95180 0.91172 0.99489 1.23794 1.09269 1.05008 0.97740 1.20669 0.92756 0.91563 0.94278 1.21640 0.94472 1.02248 1.03141 1.19991 0.81666 0.85919 0.79857 1.90991 1.71069 1.24596 1.52632 1.86221 1.27187 1.51187 1.62044 1.23050 0.93026 0.92706 0.91803 1.21756 0.90868 1.00755 1.01180 1.19051 0.94340 0.94209 0.93709 1.21217 0.99351 1.06240 1.29049 0.92396 1.25032 0.98689 0.94924 0.95858 1.69976 1.36039 1.14787 1.32560 0.86499 0.84029 0.79238 0.78029 1.19669 1.20970 1.20969 1.83818 1.42929 1.25101 1.00989 0.91505 0.91652 0.92656 0.91634 0.92145 0.91556 0.91979 0.91461 0.90513 0.80825 0.83011 0.83255 0.91940 0.91914 0.92217 0.92223 0.96299 0.96283 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.44 37.15 0.31 -0.76 16 2 C 0.01 0.09 0.99 -155.66 -0.15 -0.06 16 3 C -0.13 -1.34 8.45 37.16 0.31 -1.02 16 4 C -0.16 -1.38 7.53 37.16 0.28 -1.10 16 5 C 0.05 0.58 5.77 -13.32 -0.08 0.51 16 6 N -0.48 -6.17 10.47 -11.17 -0.12 -6.29 16 7 C 0.08 0.88 11.38 -18.34 -0.21 0.67 16 8 C -0.24 -2.75 4.36 -38.69 -0.17 -2.92 16 9 C 0.03 0.26 9.90 -39.19 -0.39 -0.13 16 10 C -0.19 -2.09 9.94 -39.33 -0.39 -2.49 16 11 C 0.48 7.34 7.24 31.89 0.23 7.57 16 12 O -0.50 -8.72 12.16 -19.42 -0.24 -8.95 16 13 O -0.35 -5.99 10.10 -41.28 -0.42 -6.41 16 14 C 0.07 1.29 5.38 37.16 0.20 1.49 16 15 C -0.11 -2.28 5.52 -26.73 -0.15 -2.43 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 S 0.21 2.58 18.69 -107.50 -2.01 0.57 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.50 7.91 -51.93 -0.41 0.09 16 33 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 39 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 381.89 15.07 5.75 5.75 Total: -1.00 -33.17 381.89 -9.18 -42.35 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.13 Total: -3.68 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.75 Total: -13.76 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.62 Total: -32.50 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.65 Total: -15.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.01 Total: 0.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.17 -9.18 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744141007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.668 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds