Wall clock time and date at job start Tue Mar 31 2020 14:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47220 * 2 1 4 4 C 1.53002 * 109.47106 * 119.99860 * 2 1 3 5 5 C 1.50696 * 109.47189 * 240.00159 * 2 1 3 6 6 N 1.29370 * 124.67574 * 59.69601 * 5 2 1 7 7 C 1.30929 * 117.50202 * 179.83559 * 6 5 2 8 8 C 1.37119 * 113.84079 * 0.44839 * 7 6 5 9 9 C 1.41649 * 126.19639 * 179.74764 * 8 7 6 10 10 C 1.35688 * 120.00117 * 131.92445 * 9 8 7 11 11 C 1.41289 * 120.00022 * 345.29085 * 10 9 8 12 12 O 1.21705 * 120.00101 * 353.34675 * 11 10 9 13 13 O 1.34987 * 120.00082 * 173.34220 * 11 10 9 14 14 C 1.42903 * 117.00346 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47174 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.46843 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47130 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99584 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00169 * 179.97438 * 17 16 15 20 20 N 1.31505 * 119.99632 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47352 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46787 * 120.00118 * 21 19 17 24 24 H 1.48503 * 109.46992 * 239.99970 * 21 19 17 25 25 S 1.70924 * 124.67090 * 240.00011 * 5 2 1 26 26 H 1.08997 * 109.47324 * 60.00182 * 1 2 3 27 27 H 1.09003 * 109.47332 * 300.00042 * 1 2 3 28 28 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47003 * 59.99756 * 3 2 1 30 30 H 1.08997 * 109.47497 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46824 * 300.00124 * 3 2 1 32 32 H 1.09002 * 109.46903 * 60.00393 * 4 2 1 33 33 H 1.09000 * 109.46927 * 179.97438 * 4 2 1 34 34 H 1.08990 * 109.47192 * 300.00051 * 4 2 1 35 35 H 1.07998 * 123.08032 * 180.21043 * 7 6 5 36 36 H 1.08004 * 119.99694 * 311.92811 * 9 8 7 37 37 H 1.07996 * 119.99694 * 165.28882 * 10 9 8 38 38 H 1.09002 * 109.46874 * 300.00522 * 14 13 11 39 39 H 1.09000 * 109.47194 * 60.00067 * 14 13 11 40 40 H 1.08995 * 109.46628 * 299.99786 * 15 14 13 41 41 H 1.08996 * 109.47146 * 60.00138 * 15 14 13 42 42 H 1.09009 * 109.46721 * 299.99479 * 16 15 14 43 43 H 1.08999 * 109.47096 * 59.99295 * 16 15 14 44 44 H 0.97010 * 119.99859 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2304 6 7 1.7715 -0.3513 -2.4456 7 6 2.2850 -1.0702 -3.4119 8 6 3.0355 -2.1312 -2.9747 9 6 3.7029 -3.0767 -3.7914 10 6 4.9983 -3.3942 -3.5419 11 6 5.7737 -2.5786 -2.6875 12 8 5.3201 -1.5284 -2.2721 13 8 7.0174 -2.9643 -2.3318 14 6 7.7445 -2.0912 -1.4651 15 6 9.1220 -2.6910 -1.1755 16 6 9.9001 -1.7565 -0.2470 17 6 11.2566 -2.3475 0.0387 18 1 11.5356 -3.2951 -0.3980 19 6 12.1415 -1.6785 0.8576 20 7 11.8015 -0.5250 1.3897 21 14 13.8227 -2.4115 1.2122 22 1 13.9579 -3.7076 0.5001 23 1 14.8784 -1.4772 0.7456 24 1 13.9680 -2.6327 2.6735 25 16 3.0190 -2.1059 -1.2128 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 -1.7489 1.2492 33 1 3.1299 -0.7216 1.2490 34 1 1.6766 -0.2074 2.1392 35 1 2.1285 -0.8501 -4.4576 36 1 3.1807 -3.5449 -4.6127 37 1 5.4367 -4.2703 -3.9964 38 1 7.8650 -1.1202 -1.9453 39 1 7.1973 -1.9689 -0.5303 40 1 9.0017 -3.6621 -0.6955 41 1 9.6689 -2.8130 -2.1104 42 1 10.0203 -0.7851 -0.7267 43 1 9.3529 -1.6349 0.6878 44 1 12.4239 -0.0545 1.9661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744141007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:40 Heat of formation + Delta-G solvation = -61.893593 kcal Electronic energy + Delta-G solvation = -24347.062283 eV Core-core repulsion = 20776.610902 eV Total energy + Delta-G solvation = -3570.451381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71391 -40.77713 -38.41307 -37.57079 -35.93922 -35.14762 -33.68149 -30.46289 -28.98294 -28.40986 -28.22502 -26.97251 -25.55457 -24.10408 -22.21524 -22.15855 -21.31271 -19.91820 -18.86293 -18.61187 -18.35396 -17.72428 -17.24295 -16.50574 -16.22333 -16.00700 -15.58015 -15.39444 -15.13955 -15.01612 -14.64356 -14.40727 -14.20508 -13.89931 -13.87471 -13.55876 -13.24864 -13.11499 -12.86875 -12.69018 -12.64741 -12.51623 -12.39231 -12.34249 -12.11542 -12.06520 -11.97377 -11.81765 -11.50594 -11.40794 -11.24366 -11.00800 -10.59627 -10.50431 -9.77503 -9.36650 -8.23187 -6.34918 -0.96188 0.21026 0.52899 0.86108 1.40552 1.40862 1.54627 1.75982 1.89157 2.11088 2.40788 3.05781 3.10636 3.73144 3.82522 3.89122 3.95490 3.97779 4.00998 4.07272 4.28251 4.32040 4.39204 4.50644 4.61246 4.66490 4.77443 4.78163 4.79071 4.88783 4.90939 4.94190 4.95637 5.06233 5.07238 5.16694 5.24352 5.30065 5.37455 5.43356 5.54578 5.61316 5.78302 6.17615 6.74071 6.75612 6.81424 7.34729 8.89341 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.002615 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.403534 B =10704.534861 C =12006.937248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.004 3.996 3 C -0.131 4.131 4 C -0.155 4.155 5 C 0.044 3.956 6 N -0.498 5.498 7 C 0.067 3.933 8 C -0.248 4.248 9 C 0.057 3.943 10 C -0.213 4.213 11 C 0.473 3.527 12 O -0.531 6.531 13 O -0.354 6.354 14 C 0.082 3.918 15 C -0.093 4.093 16 C 0.027 3.973 17 C -0.542 4.542 18 H 0.065 0.935 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.260 1.260 23 H -0.278 1.278 24 H -0.277 1.277 25 S 0.177 5.823 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.201 0.799 36 H 0.204 0.796 37 H 0.181 0.819 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.065 0.935 42 H -0.006 1.006 43 H -0.004 1.004 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.000 -4.897 -7.963 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.000 4.000 3 C -0.190 4.190 4 C -0.213 4.213 5 C -0.229 4.229 6 N -0.211 5.211 7 C -0.089 4.089 8 C -0.369 4.369 9 C 0.037 3.963 10 C -0.235 4.235 11 C 0.322 3.678 12 O -0.424 6.424 13 O -0.270 6.270 14 C 0.007 3.993 15 C -0.130 4.130 16 C -0.010 4.010 17 C -0.580 4.580 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.203 1.203 25 S 0.440 5.560 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.218 0.782 36 H 0.221 0.779 37 H 0.198 0.802 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.012 0.988 43 H 0.014 0.986 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.954 -4.609 -6.924 27.255 hybrid contribution 1.187 0.588 -0.513 1.420 sum -24.768 -4.021 -7.438 26.171 Atomic orbital electron populations 1.21781 0.90742 1.02563 1.03298 1.19422 0.97679 0.94966 0.87906 1.21817 1.00168 0.93709 1.03285 1.22058 1.00965 1.01092 0.97195 1.27652 0.99774 0.98211 0.97265 1.65840 1.25082 1.31138 0.99066 1.22793 0.94696 0.90894 1.00514 1.24135 1.09610 1.05923 0.97243 1.21245 0.91950 0.89328 0.93738 1.21789 0.94829 1.03395 1.03452 1.20859 0.80933 0.86283 0.79720 1.90992 1.71235 1.26116 1.54055 1.86201 1.28396 1.50638 1.61803 1.22601 0.92297 0.92370 0.92002 1.21455 0.91579 0.99753 1.00255 1.18926 0.94444 0.94144 0.93514 1.21647 1.00402 1.06678 1.29306 0.91671 1.26026 1.03184 0.95253 0.95497 1.70111 1.37750 1.16280 1.33245 0.85327 0.78433 0.78784 0.78072 1.18338 1.20366 1.20290 1.83906 1.43566 1.25880 1.02675 0.92421 0.89527 0.92331 0.89285 0.94398 0.92447 0.91368 0.93416 0.88440 0.78217 0.77908 0.80173 0.92907 0.92596 0.91473 0.91600 0.98770 0.98586 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.44 71.98 0.61 -1.27 16 2 C 0.00 0.08 0.99 -52.93 -0.05 0.03 16 3 C -0.13 -2.62 8.45 71.98 0.61 -2.02 16 4 C -0.16 -2.68 7.53 71.98 0.54 -2.14 16 5 C 0.04 1.09 5.77 88.47 0.51 1.60 16 6 N -0.50 -12.70 10.47 -189.26 -1.98 -14.68 16 7 C 0.07 1.47 11.38 84.56 0.96 2.44 16 8 C -0.25 -5.41 4.36 22.85 0.10 -5.31 16 9 C 0.06 0.88 9.90 22.52 0.22 1.10 16 10 C -0.21 -4.13 9.94 22.43 0.22 -3.90 16 11 C 0.47 14.28 7.24 68.57 0.50 14.77 16 12 O -0.53 -18.75 12.16 19.17 0.23 -18.51 16 13 O -0.35 -12.03 10.10 -59.05 -0.60 -12.63 16 14 C 0.08 3.18 5.38 71.98 0.39 3.56 16 15 C -0.09 -3.98 5.52 30.60 0.17 -3.81 16 16 C 0.03 1.45 4.97 29.85 0.15 1.60 16 17 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 19 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 20 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 21 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 S 0.18 4.41 18.69 -56.49 -1.06 3.35 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.08 7.91 -2.39 -0.02 1.06 16 33 H 0.05 1.01 7.91 -2.39 -0.02 0.99 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.20 3.07 8.06 -2.91 -0.02 3.04 16 36 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 37 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.05 2.13 8.13 -2.39 -0.02 2.11 16 39 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 40 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 42 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 44 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -73.67 381.89 5.50 -68.18 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.97 Total: 8.90 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 5.62 Total: -23.89 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.70 Total: -71.75 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.36 Total: -31.14 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.06 Total: 3.35 kcal Total: -73.67 5.50 -68.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744141007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.282 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds