Wall clock time and date at job start Tue Mar 31 2020 14:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47043 * 2 1 4 4 C 1.52993 * 109.47217 * 120.00112 * 2 1 3 5 5 N 1.46499 * 109.47285 * 64.99864 * 4 2 1 6 6 C 1.46500 * 120.00108 * 263.14727 * 5 4 2 7 7 C 1.50703 * 109.46938 * 278.75846 * 6 5 4 8 8 H 1.08002 * 120.00057 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99731 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00411 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99744 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47027 * 60.00507 * 11 9 7 13 13 H 1.48502 * 109.47165 * 179.97438 * 11 9 7 14 14 H 1.48490 * 109.47693 * 300.00365 * 11 9 7 15 15 C 1.34784 * 120.00019 * 83.14770 * 5 4 2 16 16 O 1.21550 * 119.99947 * 6.23048 * 15 5 4 17 17 C 1.47842 * 120.00061 * 186.23882 * 15 5 4 18 18 C 1.39569 * 120.14705 * 150.54886 * 17 15 5 19 19 C 1.37957 * 119.85656 * 180.02562 * 18 17 15 20 20 C 1.38357 * 120.14405 * 0.02562 * 19 18 17 21 21 S 1.76198 * 119.85497 * 179.70121 * 20 19 18 22 22 C 1.81400 * 103.00200 * 89.99718 * 21 20 19 23 23 O 1.42100 * 103.00116 * 336.14803 * 21 20 19 24 24 C 1.38359 * 120.28931 * 359.97438 * 20 19 18 25 25 C 1.37956 * 120.14901 * 359.97438 * 24 20 19 26 26 H 1.09002 * 109.46280 * 299.99923 * 1 2 3 27 27 H 1.08993 * 109.47325 * 59.99634 * 1 2 3 28 28 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46853 * 240.00529 * 2 1 3 30 30 H 1.08995 * 109.46948 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47133 * 300.00234 * 3 2 1 32 32 H 1.09000 * 109.46924 * 60.00122 * 3 2 1 33 33 H 1.08999 * 109.47476 * 304.99388 * 4 2 1 34 34 H 1.09003 * 109.46788 * 184.99879 * 4 2 1 35 35 H 1.08998 * 109.47273 * 38.76111 * 6 5 4 36 36 H 1.08997 * 109.47256 * 158.76171 * 6 5 4 37 37 H 0.96997 * 120.00504 * 180.02562 * 10 9 7 38 38 H 1.08003 * 120.07201 * 0.03801 * 18 17 15 39 39 H 1.08002 * 119.92923 * 179.97438 * 19 18 17 40 40 H 1.09006 * 109.46424 * 59.99889 * 22 21 20 41 41 H 1.08990 * 109.47239 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47210 * 300.00356 * 22 21 20 43 43 H 1.08008 * 119.92305 * 180.02562 * 24 20 19 44 44 H 1.08003 * 120.07586 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.4501 -2.5920 1.8902 7 6 0.7679 -2.8060 3.3477 8 1 1.7657 -2.6183 3.7160 9 6 -0.2153 -3.2404 4.2111 10 7 -1.4304 -3.4685 3.7627 11 14 0.1788 -3.5064 6.0176 12 1 0.6432 -2.2291 6.6162 13 1 -1.0403 -3.9705 6.7271 14 1 1.2467 -4.5302 6.1458 15 6 2.4022 -3.0091 0.4928 16 8 3.4583 -2.6537 0.0073 17 6 1.9399 -4.4024 0.3180 18 6 2.3039 -5.1242 -0.8198 19 6 1.8687 -6.4238 -0.9771 20 6 1.0726 -7.0118 -0.0102 21 16 0.5146 -8.6695 -0.2226 22 6 1.8297 -9.6459 0.5569 23 8 0.5656 -8.8459 -1.6317 24 6 0.7082 -6.3019 1.1201 25 6 1.1375 -5.0019 1.2901 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6056 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2950 35 1 -0.3343 -1.8411 1.7958 36 1 0.1100 -3.5298 1.4510 37 1 -2.1223 -3.7737 4.3702 38 1 2.9250 -4.6663 -1.5754 39 1 2.1492 -6.9832 -1.8573 40 1 1.9175 -9.3646 1.6064 41 1 1.5868 -10.7059 0.4844 42 1 2.7747 -9.4537 0.0490 43 1 0.0870 -6.7668 1.8713 44 1 0.8527 -4.4489 2.1731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745382908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:37 Heat of formation + Delta-G solvation = -34.542684 kcal Electronic energy + Delta-G solvation = -25738.239183 eV Core-core repulsion = 22168.973826 eV Total energy + Delta-G solvation = -3569.265357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96496 -37.91758 -36.10943 -35.65342 -34.42201 -32.49558 -30.90731 -30.59149 -28.80239 -27.79701 -26.82295 -25.98288 -23.59911 -22.50607 -22.24654 -20.17510 -18.84938 -17.89169 -16.90519 -16.49003 -16.31101 -15.83276 -14.81471 -14.77936 -14.66302 -14.60481 -14.36767 -14.10176 -13.63418 -13.48063 -13.22244 -13.11656 -12.79559 -12.53522 -12.40624 -12.16477 -12.11136 -11.96495 -11.73171 -11.49198 -11.38277 -11.12823 -11.00310 -10.84160 -10.63482 -10.33364 -10.31204 -10.25009 -9.89943 -9.77525 -9.15339 -8.90176 -8.77678 -8.39379 -8.19695 -7.78933 -6.36834 -4.46992 0.93411 1.78961 1.94639 2.73837 3.13926 3.19863 3.22539 3.35375 3.79034 3.93078 4.16494 4.28174 4.92917 5.11540 5.13601 5.21263 5.26494 5.28961 5.31762 5.35232 5.44653 5.76883 5.86683 5.91184 5.92978 5.95394 6.00267 6.14826 6.15498 6.24190 6.32177 6.39272 6.41079 6.54029 6.56133 6.70239 6.72885 6.75605 6.92192 7.09881 7.34537 7.44438 7.58472 7.84278 8.22654 8.61826 8.87819 9.21413 10.67212 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.004882 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.197182 B = 5734.385220 C = 7742.867427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.126 3.874 5 N -0.582 5.582 6 C 0.201 3.799 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.071 3.929 10 N -0.880 5.880 11 Si 0.896 3.104 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.551 3.449 16 O -0.567 6.567 17 C -0.095 4.095 18 C -0.087 4.087 19 C -0.079 4.079 20 C -0.447 4.447 21 S 1.329 4.671 22 C -0.498 4.498 23 O -0.864 6.864 24 C -0.059 4.059 25 C -0.113 4.113 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.270 0.730 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.138 0.862 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -4.513 -2.135 4.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.003 3.997 5 N -0.311 5.311 6 C 0.082 3.918 7 C -0.585 4.585 8 H 0.083 0.917 9 C -0.135 4.135 10 N -0.516 5.516 11 Si 0.723 3.277 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.340 3.660 16 O -0.449 6.449 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.099 4.099 20 C -0.545 4.545 21 S 1.527 4.473 22 C -0.655 4.655 23 O -0.860 6.860 24 C -0.078 4.078 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.156 0.844 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.717 -4.705 -2.761 5.502 hybrid contribution 2.197 0.396 0.141 2.237 sum 1.480 -4.309 -2.621 5.256 Atomic orbital electron populations 1.21874 0.94968 1.02433 1.00933 1.21493 0.96372 0.95925 0.99332 1.21743 1.00808 0.95872 1.01457 1.21376 0.99992 0.80890 0.97426 1.48063 1.27467 1.07352 1.48196 1.20483 0.81968 0.97915 0.91463 1.21432 0.97369 1.46747 0.92975 0.91729 1.24973 0.94660 0.94669 0.99155 1.69913 1.01767 1.43788 1.36144 0.86569 0.78002 0.79043 0.84095 1.20031 1.20880 1.19804 1.18320 0.83888 0.85199 0.78605 1.90673 1.23093 1.79578 1.51569 1.20224 0.98973 0.94499 0.96130 1.21199 0.98543 0.93971 0.97036 1.20841 0.96043 0.95106 0.97871 1.27615 1.08505 1.17341 1.01002 1.69473 1.02529 0.82064 0.93202 1.27761 1.15690 1.11141 1.10866 1.93063 1.81952 1.82964 1.28009 1.20922 0.97643 0.94202 0.95019 1.23655 0.92231 0.95164 1.02030 0.92563 0.93638 0.91926 0.91424 0.92823 0.92970 0.92628 0.89889 0.91282 0.94140 0.91380 0.91988 0.85644 0.85889 0.86951 0.87932 0.90131 0.84387 0.77464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.39 37.16 0.31 -1.95 16 2 C -0.11 -1.79 3.07 -90.62 -0.28 -2.06 16 3 C -0.14 -1.85 9.19 37.16 0.34 -1.50 16 4 C 0.13 2.31 4.82 -4.05 -0.02 2.29 16 5 N -0.58 -11.99 2.18 -176.18 -0.38 -12.37 16 6 C 0.20 4.39 3.95 -5.19 -0.02 4.37 16 7 C -0.55 -12.84 7.53 -34.44 -0.26 -13.10 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.66 5.34 -17.82 -0.10 1.56 16 10 N -0.88 -21.25 13.29 55.43 0.74 -20.51 16 11 Si 0.90 18.57 29.54 -169.99 -5.02 13.55 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 C 0.55 11.89 7.41 -12.33 -0.09 11.80 16 16 O -0.57 -13.23 16.36 5.32 0.09 -13.14 16 17 C -0.10 -1.91 5.59 -104.97 -0.59 -2.50 16 18 C -0.09 -1.62 9.60 -39.19 -0.38 -1.99 16 19 C -0.08 -1.36 9.42 -39.64 -0.37 -1.73 16 20 C -0.45 -6.73 5.62 -39.49 -0.22 -6.96 16 21 S 1.33 14.83 14.18 -107.50 -1.52 13.30 16 22 C -0.50 -4.81 10.70 101.05 1.08 -3.73 16 23 O -0.86 -14.77 16.89 -35.23 -0.59 -15.37 16 24 C -0.06 -0.92 9.73 -39.64 -0.39 -1.30 16 25 C -0.11 -2.17 7.49 -39.19 -0.29 -2.46 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.09 6.26 -51.93 -0.33 0.77 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 34 H 0.07 1.29 7.55 -51.93 -0.39 0.90 16 35 H 0.04 0.93 6.44 -51.93 -0.33 0.59 16 36 H 0.07 1.52 3.99 -52.22 -0.21 1.32 16 37 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 38 H 0.13 2.24 7.92 -52.48 -0.42 1.83 16 39 H 0.12 2.06 7.44 -52.49 -0.39 1.67 16 40 H 0.11 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.21 4.42 3.05 -52.48 -0.16 4.26 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -31.26 369.72 -8.81 -40.08 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.41 Total: 8.16 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.27 Total: -19.26 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.35 Total: -32.88 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.51 Total: -28.51 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 16 Polarization: 14.83 SS G_CDS: -1.52 Total: 13.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.26 -8.81 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.534 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds