Wall clock time and date at job start Tue Mar 31 2020 14:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47043 * 2 1 4 4 C 1.52993 * 109.47217 * 120.00112 * 2 1 3 5 5 N 1.46499 * 109.47285 * 64.99864 * 4 2 1 6 6 C 1.46500 * 120.00108 * 263.14727 * 5 4 2 7 7 C 1.50703 * 109.46938 * 278.75846 * 6 5 4 8 8 H 1.08002 * 120.00057 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99731 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00411 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99744 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47027 * 60.00507 * 11 9 7 13 13 H 1.48502 * 109.47165 * 179.97438 * 11 9 7 14 14 H 1.48490 * 109.47693 * 300.00365 * 11 9 7 15 15 C 1.34784 * 120.00019 * 83.14770 * 5 4 2 16 16 O 1.21550 * 119.99947 * 6.23048 * 15 5 4 17 17 C 1.47842 * 120.00061 * 186.23882 * 15 5 4 18 18 C 1.39569 * 120.14705 * 150.54886 * 17 15 5 19 19 C 1.37957 * 119.85656 * 180.02562 * 18 17 15 20 20 C 1.38357 * 120.14405 * 0.02562 * 19 18 17 21 21 S 1.76198 * 119.85497 * 179.70121 * 20 19 18 22 22 C 1.81400 * 103.00200 * 89.99718 * 21 20 19 23 23 O 1.42100 * 103.00116 * 336.14803 * 21 20 19 24 24 C 1.38359 * 120.28931 * 359.97438 * 20 19 18 25 25 C 1.37956 * 120.14901 * 359.97438 * 24 20 19 26 26 H 1.09002 * 109.46280 * 299.99923 * 1 2 3 27 27 H 1.08993 * 109.47325 * 59.99634 * 1 2 3 28 28 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46853 * 240.00529 * 2 1 3 30 30 H 1.08995 * 109.46948 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47133 * 300.00234 * 3 2 1 32 32 H 1.09000 * 109.46924 * 60.00122 * 3 2 1 33 33 H 1.08999 * 109.47476 * 304.99388 * 4 2 1 34 34 H 1.09003 * 109.46788 * 184.99879 * 4 2 1 35 35 H 1.08998 * 109.47273 * 38.76111 * 6 5 4 36 36 H 1.08997 * 109.47256 * 158.76171 * 6 5 4 37 37 H 0.96997 * 120.00504 * 180.02562 * 10 9 7 38 38 H 1.08003 * 120.07201 * 0.03801 * 18 17 15 39 39 H 1.08002 * 119.92923 * 179.97438 * 19 18 17 40 40 H 1.09006 * 109.46424 * 59.99889 * 22 21 20 41 41 H 1.08990 * 109.47239 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47210 * 300.00356 * 22 21 20 43 43 H 1.08008 * 119.92305 * 180.02562 * 24 20 19 44 44 H 1.08003 * 120.07586 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.4501 -2.5920 1.8902 7 6 0.7679 -2.8060 3.3477 8 1 1.7657 -2.6183 3.7160 9 6 -0.2153 -3.2404 4.2111 10 7 -1.4304 -3.4685 3.7627 11 14 0.1788 -3.5064 6.0176 12 1 0.6432 -2.2291 6.6162 13 1 -1.0403 -3.9705 6.7271 14 1 1.2467 -4.5302 6.1458 15 6 2.4022 -3.0091 0.4928 16 8 3.4583 -2.6537 0.0073 17 6 1.9399 -4.4024 0.3180 18 6 2.3039 -5.1242 -0.8198 19 6 1.8687 -6.4238 -0.9771 20 6 1.0726 -7.0118 -0.0102 21 16 0.5146 -8.6695 -0.2226 22 6 1.8297 -9.6459 0.5569 23 8 0.5656 -8.8459 -1.6317 24 6 0.7082 -6.3019 1.1201 25 6 1.1375 -5.0019 1.2901 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6056 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2950 35 1 -0.3343 -1.8411 1.7958 36 1 0.1100 -3.5298 1.4510 37 1 -2.1223 -3.7737 4.3702 38 1 2.9250 -4.6663 -1.5754 39 1 2.1492 -6.9832 -1.8573 40 1 1.9175 -9.3646 1.6064 41 1 1.5868 -10.7059 0.4844 42 1 2.7747 -9.4537 0.0490 43 1 0.0870 -6.7668 1.8713 44 1 0.8527 -4.4489 2.1731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745382908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:36 Heat of formation + Delta-G solvation = -52.920654 kcal Electronic energy + Delta-G solvation = -25739.036112 eV Core-core repulsion = 22168.973826 eV Total energy + Delta-G solvation = -3570.062285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54244 -39.36171 -37.69482 -36.86538 -35.96655 -34.23093 -32.29585 -31.99437 -29.62002 -29.51584 -28.04638 -27.45844 -25.26355 -23.99497 -23.67963 -21.55466 -20.37275 -19.04401 -18.65162 -18.11882 -17.64576 -17.26298 -16.41904 -16.25649 -16.03610 -15.82449 -15.74641 -15.52130 -14.94221 -14.66730 -14.60110 -14.44087 -14.15659 -13.94525 -13.76146 -13.54217 -13.35150 -13.15182 -12.99913 -12.96152 -12.74319 -12.65270 -12.54498 -12.22585 -12.07175 -11.95777 -11.67929 -11.59186 -11.54308 -11.32805 -10.77846 -10.57424 -10.22335 -9.79849 -9.47871 -9.32452 -8.16886 -6.33095 -0.41216 0.38563 0.90651 1.49141 1.52488 1.57879 1.63530 1.88736 2.21470 2.46293 2.72615 2.99011 3.11407 3.60177 3.86866 3.94307 3.99591 3.99983 4.15201 4.34640 4.41364 4.48168 4.56949 4.59028 4.63222 4.76351 4.78797 4.86368 4.90595 4.98682 5.00572 5.04985 5.15762 5.16007 5.19519 5.28276 5.33731 5.37156 5.42920 5.48221 5.69742 5.81466 5.95306 6.04440 6.51339 6.79304 7.18303 7.38626 8.86974 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.004882 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.197182 B = 5734.385220 C = 7742.867427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.122 3.878 5 N -0.582 5.582 6 C 0.214 3.786 7 C -0.556 4.556 8 H 0.049 0.951 9 C 0.042 3.958 10 N -0.898 5.898 11 Si 0.948 3.052 12 H -0.282 1.282 13 H -0.276 1.276 14 H -0.269 1.269 15 C 0.544 3.456 16 O -0.595 6.595 17 C -0.120 4.120 18 C -0.097 4.097 19 C -0.088 4.088 20 C -0.444 4.444 21 S 1.403 4.597 22 C -0.496 4.496 23 O -0.919 6.919 24 C -0.049 4.049 25 C -0.129 4.129 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.274 0.726 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.063 0.937 43 H 0.180 0.820 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -5.964 -1.068 6.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.192 4.192 4 C 0.000 4.000 5 N -0.309 5.309 6 C 0.095 3.905 7 C -0.594 4.594 8 H 0.067 0.933 9 C -0.162 4.162 10 N -0.535 5.535 11 Si 0.774 3.226 12 H -0.208 1.208 13 H -0.200 1.200 14 H -0.194 1.194 15 C 0.334 3.666 16 O -0.479 6.479 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.539 4.539 21 S 1.600 4.400 22 C -0.654 4.654 23 O -0.915 6.915 24 C -0.068 4.068 25 C -0.147 4.147 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.083 0.917 43 H 0.197 0.803 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.524 -6.107 -1.699 6.519 hybrid contribution 2.457 0.716 -0.176 2.565 sum 0.933 -5.390 -1.876 5.783 Atomic orbital electron populations 1.21809 0.94502 1.01157 1.02131 1.21423 0.96654 0.97419 0.96998 1.21699 1.00914 0.93682 1.02907 1.21529 0.99558 0.80154 0.98799 1.48113 1.26931 1.08207 1.47683 1.20267 0.81892 0.97371 0.90981 1.21441 0.96821 1.47321 0.93806 0.93253 1.25467 0.94448 0.94247 1.02008 1.69971 1.02266 1.44043 1.37260 0.85757 0.78013 0.78548 0.80287 1.20759 1.20044 1.19425 1.18679 0.83613 0.86090 0.78268 1.90632 1.24167 1.80293 1.52840 1.20195 1.00735 0.93959 0.97438 1.21219 0.99003 0.94725 0.96729 1.20982 0.96519 0.94554 0.98654 1.28231 1.06415 1.19595 0.99636 1.68885 1.01857 0.78880 0.90401 1.27740 1.13665 1.12247 1.11759 1.92956 1.83608 1.83107 1.31812 1.21324 0.96843 0.92735 0.95895 1.23514 0.93090 0.96821 1.01318 0.92251 0.91456 0.94418 0.93389 0.92674 0.91144 0.91512 0.89857 0.92125 0.95524 0.91530 0.91613 0.86061 0.85717 0.84476 0.85330 0.91723 0.80278 0.79335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 8.39 71.98 0.60 -3.74 16 2 C -0.11 -3.42 3.07 -10.79 -0.03 -3.45 16 3 C -0.13 -3.38 9.19 71.98 0.66 -2.71 16 4 C 0.12 4.64 4.82 86.38 0.42 5.05 16 5 N -0.58 -25.00 2.18 -829.58 -1.81 -26.81 16 6 C 0.21 9.67 3.95 85.63 0.34 10.01 16 7 C -0.56 -26.49 7.53 25.60 0.19 -26.30 16 8 H 0.05 2.46 7.81 -2.91 -0.02 2.44 16 9 C 0.04 1.95 5.34 84.66 0.45 2.40 16 10 N -0.90 -42.89 13.29 21.45 0.28 -42.61 16 11 Si 0.95 37.38 29.54 68.60 2.03 39.41 16 12 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 13 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 14 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 15 C 0.54 24.60 7.41 86.78 0.64 25.24 16 16 O -0.60 -29.14 16.36 -3.87 -0.06 -29.20 16 17 C -0.12 -4.99 5.59 -20.09 -0.11 -5.10 16 18 C -0.10 -3.70 9.60 22.52 0.22 -3.48 16 19 C -0.09 -3.00 9.42 22.23 0.21 -2.79 16 20 C -0.44 -12.60 5.62 22.33 0.13 -12.48 16 21 S 1.40 27.26 14.18 -56.49 -0.80 26.46 16 22 C -0.50 -7.64 10.70 113.37 1.21 -6.43 16 23 O -0.92 -29.79 16.89 -148.98 -2.52 -32.31 16 24 C -0.05 -1.45 9.73 22.23 0.22 -1.24 16 25 C -0.13 -4.98 7.49 22.53 0.17 -4.81 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 1.35 6.26 -2.39 -0.01 1.33 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 3.10 8.02 -2.39 -0.02 3.08 16 34 H 0.06 2.37 7.55 -2.39 -0.02 2.35 16 35 H 0.03 1.27 6.44 -2.39 -0.02 1.25 16 36 H 0.07 3.07 3.99 -2.66 -0.01 3.06 16 37 H 0.27 12.35 8.31 -92.71 -0.77 11.58 16 38 H 0.12 4.59 7.92 -2.91 -0.02 4.57 16 39 H 0.12 4.17 7.44 -2.91 -0.02 4.15 16 40 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.13 1.42 8.14 -2.40 -0.02 1.40 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.18 3.69 8.06 -2.91 -0.02 3.66 16 44 H 0.19 8.13 3.05 -2.91 -0.01 8.12 16 Total: -1.00 -69.00 369.72 3.43 -65.57 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 1.00 Total: 29.33 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 5.31 Total: -29.83 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.52 Total: -69.42 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -2.58 Total: -61.51 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: 27.26 SS G_CDS: -0.80 Total: 26.46 kcal Total: -69.00 3.43 -65.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.651 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds