Wall clock time and date at job start Tue Mar 31 2020 14:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.53001 * 109.47274 * 120.00262 * 2 1 3 5 5 N 1.46503 * 109.47029 * 174.83340 * 4 2 1 6 6 C 1.46496 * 119.99943 * 275.53053 * 5 4 2 7 7 C 1.50700 * 109.47073 * 278.50268 * 6 5 4 8 8 H 1.07996 * 120.00170 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00306 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00437 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99675 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47596 * 90.00007 * 11 9 7 13 13 H 1.48506 * 109.47145 * 209.99952 * 11 9 7 14 14 H 1.48502 * 109.47297 * 329.99544 * 11 9 7 15 15 C 1.34776 * 119.99813 * 95.53148 * 5 4 2 16 16 O 1.21548 * 120.00233 * 6.01398 * 15 5 4 17 17 C 1.47852 * 119.99732 * 186.00689 * 15 5 4 18 18 C 1.39574 * 120.14679 * 330.20082 * 17 15 5 19 19 C 1.37957 * 119.85528 * 179.74142 * 18 17 15 20 20 C 1.38365 * 120.13946 * 0.53490 * 19 18 17 21 21 S 1.76201 * 119.84859 * 179.75963 * 20 19 18 22 22 C 1.81397 * 103.00391 * 269.97685 * 21 20 19 23 23 O 1.42096 * 103.00352 * 23.83553 * 21 20 19 24 24 C 1.38355 * 120.29305 * 359.73974 * 20 19 18 25 25 C 1.37956 * 120.14902 * 359.97438 * 24 20 19 26 26 H 1.08996 * 109.47225 * 299.99721 * 1 2 3 27 27 H 1.08998 * 109.47295 * 60.00202 * 1 2 3 28 28 H 1.09009 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47330 * 239.99983 * 2 1 3 30 30 H 1.08999 * 109.47341 * 185.94538 * 3 2 1 31 31 H 1.08998 * 109.47023 * 305.94911 * 3 2 1 32 32 H 1.09008 * 109.46817 * 65.94503 * 3 2 1 33 33 H 1.08997 * 109.46998 * 54.83378 * 4 2 1 34 34 H 1.09000 * 109.46944 * 294.82886 * 4 2 1 35 35 H 1.08997 * 109.47316 * 38.50247 * 6 5 4 36 36 H 1.09000 * 109.47390 * 158.50239 * 6 5 4 37 37 H 0.97005 * 120.00427 * 179.97438 * 10 9 7 38 38 H 1.08005 * 120.07306 * 359.97438 * 18 17 15 39 39 H 1.08000 * 119.93136 * 180.26983 * 19 18 17 40 40 H 1.09000 * 109.46884 * 60.00155 * 22 21 20 41 41 H 1.08999 * 109.47337 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.46977 * 300.00157 * 22 21 20 43 43 H 1.08006 * 119.92318 * 179.97438 * 24 20 19 44 44 H 1.07994 * 120.07516 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4997 -0.8299 1.1886 6 6 4.1222 -1.9344 0.4545 7 6 4.1358 -3.1681 1.3199 8 1 3.7226 -3.1329 2.3170 9 6 4.6768 -4.3416 0.8390 10 7 4.6891 -5.4181 1.5943 11 14 5.3935 -4.4020 -0.8850 12 1 6.8351 -4.0490 -0.8345 13 1 5.2384 -5.7715 -1.4379 14 1 4.6768 -3.4337 -1.7533 15 6 4.2699 0.0863 1.8081 16 8 3.7575 0.9385 2.5070 17 6 5.7383 0.0545 1.6378 18 6 6.3912 -1.1574 1.4075 19 6 7.7608 -1.1794 1.2441 20 6 8.4884 -0.0049 1.3191 21 16 10.2382 -0.0427 1.1155 22 6 10.8410 -0.2842 2.8093 23 8 10.4471 -1.2306 0.3644 24 6 7.8480 1.1991 1.5528 25 6 6.4781 1.2357 1.7122 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1247 1.4444 -0.1064 31 1 1.5923 1.9861 -0.8319 32 1 1.7661 1.9247 0.9385 33 1 1.6031 -1.7188 1.2966 34 1 1.7543 -0.1568 2.1368 35 1 3.5530 -2.1337 -0.4534 36 1 5.1447 -1.6646 0.1904 37 1 5.0694 -6.2438 1.2558 38 1 5.8249 -2.0755 1.3535 39 1 8.2668 -2.1159 1.0615 40 1 10.4452 -1.2191 3.2059 41 1 11.9303 -0.3232 2.8052 42 1 10.5098 0.5449 3.4345 43 1 8.4218 2.1122 1.6107 44 1 5.9795 2.1760 1.8950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745382910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:40 Heat of formation + Delta-G solvation = -29.399742 kcal Electronic energy + Delta-G solvation = -25909.054514 eV Core-core repulsion = 22340.012172 eV Total energy + Delta-G solvation = -3569.042342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09822 -38.03228 -36.09697 -35.67804 -34.56520 -32.50857 -31.01431 -30.71211 -28.84068 -28.32546 -26.90777 -26.11803 -23.41578 -22.49472 -22.32715 -20.10640 -18.92256 -17.96410 -17.16759 -16.82247 -16.38440 -15.88173 -15.09013 -14.79396 -14.63460 -14.53367 -14.32259 -14.01386 -13.83107 -13.69130 -13.31839 -13.11964 -12.94354 -12.73346 -12.40258 -12.35950 -12.19446 -12.01343 -11.86939 -11.51541 -11.48535 -11.13567 -10.99709 -10.90702 -10.66778 -10.35716 -10.34440 -10.25831 -10.07141 -9.75371 -9.26261 -8.99852 -8.89532 -8.54256 -8.29593 -7.82719 -6.38652 -4.42465 0.83818 1.66851 1.89038 2.66452 3.11811 3.18801 3.23011 3.26462 3.68237 3.87679 4.13757 4.14608 4.89655 5.01666 5.09904 5.12605 5.17399 5.18663 5.22126 5.23172 5.37638 5.71154 5.78446 5.81582 5.89759 5.90369 5.92426 6.05787 6.07287 6.18366 6.24876 6.27824 6.31328 6.37723 6.40716 6.54445 6.58260 6.66729 6.67907 6.80081 7.17741 7.21666 7.32309 7.96671 8.27043 8.67354 8.77449 9.18437 10.72391 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.005125 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.213234 B = 5462.415905 C = 7261.108796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.122 3.878 5 N -0.578 5.578 6 C 0.178 3.822 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.877 5.877 11 Si 0.856 3.144 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.260 1.260 15 C 0.556 3.444 16 O -0.559 6.559 17 C -0.094 4.094 18 C -0.118 4.118 19 C -0.069 4.069 20 C -0.448 4.448 21 S 1.326 4.674 22 C -0.498 4.498 23 O -0.857 6.857 24 C -0.069 4.069 25 C -0.088 4.088 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.270 0.730 38 H 0.199 0.801 39 H 0.128 0.872 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.136 0.864 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 15.233 -2.486 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C -0.001 4.001 5 N -0.306 5.306 6 C 0.057 3.943 7 C -0.586 4.586 8 H 0.101 0.899 9 C -0.123 4.123 10 N -0.513 5.513 11 Si 0.681 3.319 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.184 1.184 15 C 0.345 3.655 16 O -0.440 6.440 17 C -0.097 4.097 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.545 4.545 21 S 1.523 4.477 22 C -0.655 4.655 23 O -0.852 6.852 24 C -0.088 4.088 25 C -0.108 4.108 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.215 0.785 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.321 15.493 -2.950 16.991 hybrid contribution -0.534 -2.308 0.142 2.374 sum 5.787 13.185 -2.808 14.670 Atomic orbital electron populations 1.21742 0.94931 1.01771 1.01470 1.21507 0.95598 0.96812 0.99382 1.21759 1.00783 0.95684 1.01261 1.21464 0.79874 1.01162 0.97594 1.47725 1.06049 1.25788 1.51013 1.20685 0.95229 0.85386 0.92957 1.21305 1.41587 0.92795 1.02870 0.89870 1.24899 0.94940 0.95258 0.97200 1.69871 1.43407 1.01295 1.36695 0.87131 0.80926 0.78691 0.85123 1.18964 1.20306 1.18389 1.18230 0.86374 0.81200 0.79726 1.90678 1.74856 1.38659 1.39833 1.20244 0.93826 0.94598 1.01074 1.23544 0.95347 1.01574 0.93141 1.21186 0.94537 0.97475 0.95608 1.27689 1.18375 0.97763 1.10699 1.69233 0.83071 1.11015 0.84396 1.27756 1.08484 1.08116 1.21108 1.93130 1.81189 1.50934 1.59969 1.20614 0.94142 0.96078 0.97999 1.21252 0.93839 0.97661 0.98071 0.92679 0.92887 0.92494 0.91161 0.93248 0.93583 0.92299 0.89995 0.90212 0.94960 0.92686 0.91935 0.78543 0.85444 0.89786 0.87888 0.87122 0.84642 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 2 C -0.11 -1.73 3.12 -90.62 -0.28 -2.02 16 3 C -0.14 -2.06 8.20 37.16 0.30 -1.75 16 4 C 0.12 2.22 4.98 -4.04 -0.02 2.20 16 5 N -0.58 -11.90 2.28 -176.18 -0.40 -12.30 16 6 C 0.18 3.97 3.74 -5.20 -0.02 3.95 16 7 C -0.55 -14.18 8.04 -34.44 -0.28 -14.46 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.08 2.22 5.35 -17.82 -0.10 2.12 16 10 N -0.88 -25.09 13.96 55.43 0.77 -24.31 16 11 Si 0.86 19.95 27.36 -169.99 -4.65 15.30 16 12 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 15 C 0.56 11.56 6.12 -12.33 -0.08 11.49 16 16 O -0.56 -12.19 15.65 5.32 0.08 -12.11 16 17 C -0.09 -1.82 5.58 -104.97 -0.59 -2.41 16 18 C -0.12 -2.43 7.48 -39.19 -0.29 -2.73 16 19 C -0.07 -1.31 9.43 -39.64 -0.37 -1.68 16 20 C -0.45 -6.47 5.62 -39.49 -0.22 -6.69 16 21 S 1.33 14.05 14.18 -107.50 -1.52 12.53 16 22 C -0.50 -4.68 10.70 101.05 1.08 -3.60 16 23 O -0.86 -15.23 16.88 -35.23 -0.59 -15.82 16 24 C -0.07 -0.85 9.73 -39.64 -0.39 -1.24 16 25 C -0.09 -1.37 9.60 -39.19 -0.38 -1.75 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.07 1.12 7.99 -51.93 -0.41 0.71 16 30 H 0.05 0.81 7.04 -51.93 -0.37 0.45 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 34 H 0.08 1.47 7.20 -51.93 -0.37 1.10 16 35 H 0.03 0.71 7.04 -51.93 -0.37 0.35 16 36 H 0.06 1.23 3.49 -51.96 -0.18 1.05 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.20 4.58 2.94 -52.48 -0.15 4.43 16 39 H 0.13 2.60 7.44 -52.49 -0.39 2.21 16 40 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.11 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.13 1.85 7.92 -52.49 -0.42 1.44 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -34.99 366.67 -8.54 -43.53 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.48 Total: 7.66 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -1.28 Total: -20.00 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.37 Total: -36.62 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.51 Total: -27.93 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.65 Total: 15.30 kcal Atomic # 16 Polarization: 14.05 SS G_CDS: -1.52 Total: 12.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.99 -8.54 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.129 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds