Wall clock time and date at job start Tue Mar 31 2020 14:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.53001 * 109.47274 * 120.00262 * 2 1 3 5 5 N 1.46503 * 109.47029 * 174.83340 * 4 2 1 6 6 C 1.46496 * 119.99943 * 275.53053 * 5 4 2 7 7 C 1.50700 * 109.47073 * 278.50268 * 6 5 4 8 8 H 1.07996 * 120.00170 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00306 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00437 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99675 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47596 * 90.00007 * 11 9 7 13 13 H 1.48506 * 109.47145 * 209.99952 * 11 9 7 14 14 H 1.48502 * 109.47297 * 329.99544 * 11 9 7 15 15 C 1.34776 * 119.99813 * 95.53148 * 5 4 2 16 16 O 1.21548 * 120.00233 * 6.01398 * 15 5 4 17 17 C 1.47852 * 119.99732 * 186.00689 * 15 5 4 18 18 C 1.39574 * 120.14679 * 330.20082 * 17 15 5 19 19 C 1.37957 * 119.85528 * 179.74142 * 18 17 15 20 20 C 1.38365 * 120.13946 * 0.53490 * 19 18 17 21 21 S 1.76201 * 119.84859 * 179.75963 * 20 19 18 22 22 C 1.81397 * 103.00391 * 269.97685 * 21 20 19 23 23 O 1.42096 * 103.00352 * 23.83553 * 21 20 19 24 24 C 1.38355 * 120.29305 * 359.73974 * 20 19 18 25 25 C 1.37956 * 120.14902 * 359.97438 * 24 20 19 26 26 H 1.08996 * 109.47225 * 299.99721 * 1 2 3 27 27 H 1.08998 * 109.47295 * 60.00202 * 1 2 3 28 28 H 1.09009 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47330 * 239.99983 * 2 1 3 30 30 H 1.08999 * 109.47341 * 185.94538 * 3 2 1 31 31 H 1.08998 * 109.47023 * 305.94911 * 3 2 1 32 32 H 1.09008 * 109.46817 * 65.94503 * 3 2 1 33 33 H 1.08997 * 109.46998 * 54.83378 * 4 2 1 34 34 H 1.09000 * 109.46944 * 294.82886 * 4 2 1 35 35 H 1.08997 * 109.47316 * 38.50247 * 6 5 4 36 36 H 1.09000 * 109.47390 * 158.50239 * 6 5 4 37 37 H 0.97005 * 120.00427 * 179.97438 * 10 9 7 38 38 H 1.08005 * 120.07306 * 359.97438 * 18 17 15 39 39 H 1.08000 * 119.93136 * 180.26983 * 19 18 17 40 40 H 1.09000 * 109.46884 * 60.00155 * 22 21 20 41 41 H 1.08999 * 109.47337 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.46977 * 300.00157 * 22 21 20 43 43 H 1.08006 * 119.92318 * 179.97438 * 24 20 19 44 44 H 1.07994 * 120.07516 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4997 -0.8299 1.1886 6 6 4.1222 -1.9344 0.4545 7 6 4.1358 -3.1681 1.3199 8 1 3.7226 -3.1329 2.3170 9 6 4.6768 -4.3416 0.8390 10 7 4.6891 -5.4181 1.5943 11 14 5.3935 -4.4020 -0.8850 12 1 6.8351 -4.0490 -0.8345 13 1 5.2384 -5.7715 -1.4379 14 1 4.6768 -3.4337 -1.7533 15 6 4.2699 0.0863 1.8081 16 8 3.7575 0.9385 2.5070 17 6 5.7383 0.0545 1.6378 18 6 6.3912 -1.1574 1.4075 19 6 7.7608 -1.1794 1.2441 20 6 8.4884 -0.0049 1.3191 21 16 10.2382 -0.0427 1.1155 22 6 10.8410 -0.2842 2.8093 23 8 10.4471 -1.2306 0.3644 24 6 7.8480 1.1991 1.5528 25 6 6.4781 1.2357 1.7122 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1247 1.4444 -0.1064 31 1 1.5923 1.9861 -0.8319 32 1 1.7661 1.9247 0.9385 33 1 1.6031 -1.7188 1.2966 34 1 1.7543 -0.1568 2.1368 35 1 3.5530 -2.1337 -0.4534 36 1 5.1447 -1.6646 0.1904 37 1 5.0694 -6.2438 1.2558 38 1 5.8249 -2.0755 1.3535 39 1 8.2668 -2.1159 1.0615 40 1 10.4452 -1.2191 3.2059 41 1 11.9303 -0.3232 2.8052 42 1 10.5098 0.5449 3.4345 43 1 8.4218 2.1122 1.6107 44 1 5.9795 2.1760 1.8950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745382910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:39 Heat of formation + Delta-G solvation = -53.569604 kcal Electronic energy + Delta-G solvation = -25910.102598 eV Core-core repulsion = 22340.012172 eV Total energy + Delta-G solvation = -3570.090426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62822 -39.40501 -37.64350 -36.90683 -36.10762 -34.45199 -32.33729 -32.04858 -30.18151 -29.63131 -28.06964 -27.50552 -25.06537 -24.07894 -23.69971 -21.41975 -20.43843 -19.23802 -19.05617 -18.32642 -17.70192 -17.26618 -16.65073 -16.25482 -16.00224 -15.80562 -15.67509 -15.41154 -15.27399 -14.90636 -14.70320 -14.57267 -14.36032 -13.92726 -13.80035 -13.60299 -13.45275 -13.23980 -13.15167 -12.94470 -12.78096 -12.72002 -12.52714 -12.48567 -12.00190 -11.88157 -11.87641 -11.71282 -11.59974 -11.40648 -11.00763 -10.80225 -10.27195 -9.90172 -9.51068 -9.38302 -8.49636 -6.56136 -0.44776 0.35799 0.91305 1.22042 1.26973 1.32214 1.59715 1.87515 2.13944 2.15395 2.66699 2.84270 2.98517 3.50555 3.83251 3.89924 4.00101 4.08150 4.14927 4.31871 4.39689 4.44757 4.51403 4.55190 4.61015 4.62016 4.70757 4.74262 4.80984 4.90430 4.97718 5.02054 5.05747 5.12706 5.17075 5.18515 5.23865 5.27057 5.36708 5.40180 5.41607 5.62622 5.90277 5.99951 6.45367 6.53209 7.03776 7.16956 8.65665 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.005125 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.213234 B = 5462.415905 C = 7261.108796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.190 3.810 7 C -0.538 4.538 8 H 0.037 0.963 9 C 0.035 3.965 10 N -0.927 5.927 11 Si 0.915 3.085 12 H -0.272 1.272 13 H -0.273 1.273 14 H -0.235 1.235 15 C 0.551 3.449 16 O -0.574 6.574 17 C -0.120 4.120 18 C -0.147 4.147 19 C -0.097 4.097 20 C -0.447 4.447 21 S 1.415 4.585 22 C -0.498 4.498 23 O -0.928 6.928 24 C -0.037 4.037 25 C -0.085 4.085 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.272 0.728 38 H 0.163 0.837 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.211 0.789 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 19.218 -3.641 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.187 4.187 4 C -0.004 4.004 5 N -0.312 5.312 6 C 0.068 3.932 7 C -0.576 4.576 8 H 0.055 0.945 9 C -0.166 4.166 10 N -0.565 5.565 11 Si 0.737 3.263 12 H -0.197 1.197 13 H -0.198 1.198 14 H -0.157 1.157 15 C 0.341 3.659 16 O -0.457 6.457 17 C -0.123 4.123 18 C -0.165 4.165 19 C -0.116 4.116 20 C -0.542 4.542 21 S 1.612 4.388 22 C -0.656 4.656 23 O -0.924 6.924 24 C -0.056 4.056 25 C -0.105 4.105 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.179 0.821 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.228 0.772 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.926 19.493 -4.127 21.444 hybrid contribution -0.919 -3.438 0.702 3.627 sum 7.007 16.055 -3.424 17.849 Atomic orbital electron populations 1.21710 0.92519 1.02294 1.02813 1.21466 0.97536 0.96617 0.97118 1.21683 0.99680 0.95408 1.01917 1.21608 0.78814 1.00807 0.99213 1.47787 1.07038 1.25369 1.50978 1.20445 0.96016 0.84364 0.92337 1.21337 1.40346 0.94562 1.01355 0.94486 1.25609 0.95282 0.94767 1.00974 1.69999 1.45510 1.02132 1.38842 0.86197 0.79781 0.79351 0.80972 1.19729 1.19775 1.15749 1.18580 0.87287 0.80838 0.79162 1.90645 1.75411 1.39263 1.40385 1.20283 0.93008 0.95712 1.03320 1.23077 0.96146 1.00928 0.96393 1.21030 0.94113 0.98392 0.98045 1.28300 1.20588 0.96855 1.08492 1.68327 0.79016 1.07846 0.83625 1.27775 1.10100 1.08076 1.19678 1.93001 1.81626 1.53899 1.63887 1.21423 0.93104 0.97696 0.93347 1.21671 0.95231 0.96820 0.96738 0.92151 0.90685 0.92459 0.91694 0.95080 0.90905 0.93092 0.91352 0.90882 0.94317 0.91829 0.91868 0.82066 0.88447 0.92762 0.85401 0.83476 0.77238 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 2 C -0.11 -3.23 3.12 -10.79 -0.03 -3.27 16 3 C -0.13 -3.70 8.20 71.98 0.59 -3.11 16 4 C 0.12 4.44 4.98 86.38 0.43 4.87 16 5 N -0.58 -25.01 2.28 -829.58 -1.89 -26.90 16 6 C 0.19 8.81 3.74 85.63 0.32 9.13 16 7 C -0.54 -29.74 8.04 25.60 0.21 -29.53 16 8 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 9 C 0.04 1.97 5.35 84.66 0.45 2.42 16 10 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 11 Si 0.91 42.71 27.36 68.60 1.88 44.58 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.23 -9.91 6.54 99.48 0.65 -9.26 16 15 C 0.55 23.45 6.12 86.79 0.53 23.98 16 16 O -0.57 -25.26 15.65 -3.87 -0.06 -25.32 16 17 C -0.12 -4.66 5.58 -20.09 -0.11 -4.77 16 18 C -0.15 -6.31 7.48 22.53 0.17 -6.14 16 19 C -0.10 -3.75 9.43 22.23 0.21 -3.54 16 20 C -0.45 -11.79 5.62 22.33 0.13 -11.66 16 21 S 1.41 25.45 14.18 -56.49 -0.80 24.64 16 22 C -0.50 -7.42 10.70 113.37 1.21 -6.20 16 23 O -0.93 -32.27 16.88 -148.98 -2.52 -34.79 16 24 C -0.04 -0.74 9.73 22.23 0.22 -0.52 16 25 C -0.08 -2.38 9.60 22.53 0.22 -2.17 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.06 2.02 7.99 -2.38 -0.02 2.00 16 30 H 0.03 0.98 7.04 -2.39 -0.02 0.97 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 2.69 8.11 -2.39 -0.02 2.67 16 34 H 0.07 2.81 7.20 -2.39 -0.02 2.79 16 35 H 0.04 1.74 7.04 -2.39 -0.02 1.72 16 36 H 0.06 2.96 3.49 -2.42 -0.01 2.95 16 37 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 38 H 0.16 8.06 2.94 -2.91 -0.01 8.05 16 39 H 0.10 4.27 7.44 -2.91 -0.02 4.25 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.15 3.68 7.92 -2.91 -0.02 3.65 16 Total: -1.00 -84.97 366.67 3.04 -81.92 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.94 Total: 24.81 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 5.20 Total: -33.04 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.59 Total: -82.81 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -2.58 Total: -60.11 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: 25.45 SS G_CDS: -0.80 Total: 24.64 kcal Total: -84.97 3.04 -81.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.354 kcal (2) G-P(sol) polarization free energy of solvation -84.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds