Wall clock time and date at job start Tue Mar 31 2020 14:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46644 * 188.79637 * 3 2 1 5 5 H 1.08995 * 109.46882 * 58.02022 * 4 3 2 6 6 O 1.45201 * 109.47017 * 298.01573 * 4 3 2 7 7 C 1.34866 * 116.99598 * 139.59066 * 6 4 3 8 8 O 1.21597 * 120.00031 * 356.42038 * 7 6 4 9 9 C 1.46708 * 120.00057 * 176.42149 * 7 6 4 10 10 C 1.36219 * 125.45262 * 185.53502 * 9 7 6 11 11 C 1.41658 * 107.74425 * 179.84661 * 10 9 7 12 12 C 1.40043 * 133.33733 * 180.18556 * 11 10 9 13 13 C 1.36565 * 119.82986 * 180.30767 * 12 11 10 14 14 C 1.38861 * 120.60262 * 359.95921 * 13 12 11 15 15 C 1.37837 * 120.63605 * 0.02562 * 14 13 12 16 16 C 1.39090 * 119.82084 * 0.02562 * 15 14 13 17 17 N 1.37818 * 133.15516 * 180.02562 * 16 15 14 18 18 C 1.36871 * 125.62149 * 359.97438 * 17 16 15 19 19 H 1.07993 * 120.00348 * 134.84488 * 18 17 16 20 20 C 1.39031 * 120.00148 * 314.84763 * 18 17 16 21 21 N 1.31339 * 119.99905 * 162.77770 * 20 18 17 22 22 Si 1.86803 * 119.99699 * 342.77776 * 20 18 17 23 23 H 1.48505 * 109.47025 * 96.00666 * 22 20 18 24 24 H 1.48494 * 109.47121 * 216.00338 * 22 20 18 25 25 H 1.48500 * 109.47502 * 336.00872 * 22 20 18 26 26 C 1.52998 * 109.46853 * 178.01862 * 4 3 2 27 27 C 1.53007 * 117.49847 * 113.21738 * 26 4 3 28 28 C 1.52992 * 117.50017 * 181.87965 * 26 4 3 29 29 H 4.44652 * 5.63369 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47368 * 68.80252 * 3 2 1 31 31 H 1.08990 * 109.47352 * 308.79682 * 3 2 1 32 32 H 1.08001 * 126.12011 * 359.97438 * 10 9 7 33 33 H 1.08009 * 120.08548 * 0.31274 * 12 11 10 34 34 H 1.08003 * 119.69905 * 179.97438 * 13 12 11 35 35 H 1.07998 * 119.68283 * 180.02562 * 14 13 12 36 36 H 1.08001 * 120.09332 * 180.02562 * 15 14 13 37 37 H 0.97008 * 119.99517 * 185.00749 * 21 20 18 38 38 H 1.09005 * 115.54956 * 327.55414 * 26 4 3 39 39 H 1.09003 * 117.49625 * 215.00572 * 27 26 4 40 40 H 1.08996 * 117.49619 * 0.02562 * 27 26 4 41 41 H 1.09000 * 117.49648 * 359.97384 * 28 26 4 42 42 H 1.09001 * 117.50425 * 145.00014 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4266 0.2206 5 1 2.7630 1.8108 1.1621 6 8 2.7099 2.2739 -0.8712 7 6 2.2959 3.5170 -0.5517 8 8 2.2453 3.8603 0.6137 9 6 1.9065 4.4552 -1.6102 10 6 1.5755 5.7634 -1.4241 11 6 1.2679 6.3155 -2.6918 12 6 0.8732 7.5910 -3.1145 13 6 0.6370 7.8248 -4.4391 14 6 0.7853 6.8086 -5.3737 15 6 1.1730 5.5452 -4.9821 16 6 1.4183 5.2823 -3.6385 17 7 1.8093 4.1510 -2.9554 18 6 2.0620 2.9284 -3.5165 19 1 2.9403 2.3717 -3.2251 20 6 1.1880 2.4033 -4.4616 21 7 1.5770 1.4206 -5.2413 22 14 -0.5396 3.0954 -4.6224 23 1 -0.5683 4.1074 -5.7088 24 1 -1.4851 1.9965 -4.9444 25 1 -0.9388 3.7326 -3.3418 26 6 4.6844 1.4199 0.2700 27 6 5.4310 2.1230 -0.8656 28 6 5.3887 2.7533 0.5287 29 1 -1.0503 -0.0004 -0.0003 30 1 3.0096 -0.3708 -0.9581 31 1 3.0096 -0.6430 0.8008 32 1 1.5537 6.2864 -0.4794 33 1 0.7560 8.3877 -2.3947 34 1 0.3324 8.8091 -4.7627 35 1 0.5950 7.0101 -6.4176 36 1 1.2860 4.7614 -5.7165 37 1 0.9941 1.1029 -5.9486 38 1 5.1374 0.5217 0.6897 39 1 6.3750 1.6873 -1.1929 40 1 4.8326 2.5905 -1.6475 41 1 4.7626 3.6353 0.6634 42 1 6.3050 2.7324 1.1187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750774393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:56 Heat of formation + Delta-G solvation = 59.345938 kcal Electronic energy + Delta-G solvation = -27584.257660 eV Core-core repulsion = 23883.619668 eV Total energy + Delta-G solvation = -3700.637992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88720 -39.84099 -37.31615 -36.23136 -35.31088 -33.91797 -33.56058 -31.42332 -30.23127 -29.31373 -28.45355 -24.99313 -24.72033 -23.58183 -22.17636 -21.19589 -20.99433 -19.89418 -19.26206 -18.35612 -17.88124 -17.31801 -16.47169 -15.94113 -15.69868 -15.26113 -14.76791 -14.47202 -14.35852 -13.78687 -13.67066 -13.43533 -13.24126 -13.14302 -13.00424 -12.85290 -12.37386 -12.09379 -11.87798 -11.76196 -11.45421 -11.22303 -11.04256 -10.96026 -10.57342 -10.43246 -10.35798 -10.28071 -10.19342 -9.93119 -9.92138 -9.73403 -9.61276 -9.48860 -8.74936 -7.45245 -7.05847 -6.88347 -4.57445 1.41461 2.42298 2.63530 2.98440 3.01925 3.09158 3.12652 3.20542 3.24085 3.84718 3.87282 3.97112 4.13499 4.51534 4.54634 4.74173 4.89676 5.01390 5.11079 5.22602 5.33715 5.48752 5.54685 5.57867 5.66355 5.80404 5.85218 5.90807 6.03773 6.05317 6.11126 6.17724 6.26273 6.29836 6.35560 6.47344 6.54131 6.68785 6.76759 6.93186 7.16229 7.20919 7.29079 7.54509 7.55154 7.83145 7.93252 8.13089 8.40437 8.67359 8.98027 10.12342 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.005677 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.199011 B = 4930.843923 C = 5888.912759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C -0.005 4.005 4 C 0.115 3.885 5 H 0.093 0.907 6 O -0.313 6.313 7 C 0.544 3.456 8 O -0.523 6.523 9 C -0.012 4.012 10 C -0.156 4.156 11 C -0.126 4.126 12 C -0.076 4.076 13 C -0.157 4.157 14 C -0.131 4.131 15 C -0.099 4.099 16 C 0.058 3.942 17 N -0.256 5.256 18 C -0.337 4.337 19 H 0.132 0.868 20 C 0.086 3.914 21 N -0.823 5.823 22 Si 0.867 3.133 23 H -0.247 1.247 24 H -0.281 1.281 25 H -0.254 1.254 26 C -0.173 4.173 27 C -0.165 4.165 28 C -0.180 4.180 29 H 0.214 0.786 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.287 0.713 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 0.565 5.375 5.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.180 4.180 3 C -0.041 4.041 4 C 0.059 3.941 5 H 0.111 0.889 6 O -0.229 6.229 7 C 0.392 3.608 8 O -0.414 6.414 9 C -0.124 4.124 10 C -0.182 4.182 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.176 4.176 14 C -0.151 4.151 15 C -0.118 4.118 16 C -0.056 4.056 17 N 0.081 4.919 18 C -0.465 4.465 19 H 0.149 0.851 20 C -0.129 4.129 21 N -0.451 5.451 22 Si 0.691 3.309 23 H -0.172 1.172 24 H -0.207 1.207 25 H -0.178 1.178 26 C -0.191 4.191 27 C -0.202 4.202 28 C -0.217 4.217 29 H 0.231 0.769 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.195 -0.005 5.491 5.913 hybrid contribution -1.040 -0.020 -0.129 1.048 sum 1.155 -0.024 5.361 5.484 Atomic orbital electron populations 1.24790 0.95911 1.00247 1.01433 1.22795 0.94309 1.00767 1.00149 1.18815 0.85475 0.95311 1.04498 1.22093 0.91747 0.89138 0.91120 0.88904 1.87000 1.74170 1.24106 1.37587 1.20002 0.73121 0.80541 0.87147 1.90778 1.53327 1.77446 1.19822 1.19246 1.15787 0.94343 0.83048 1.20400 1.08568 0.92403 0.96870 1.17926 1.08365 0.93899 0.92862 1.20164 0.99440 0.94470 0.95394 1.20367 1.05551 0.98526 0.93169 1.20594 1.03268 0.92531 0.98727 1.20207 1.01388 0.97317 0.92913 1.18402 1.07397 0.86411 0.93425 1.40396 1.41681 1.07189 1.02681 1.19527 1.10907 0.93370 1.22686 0.85101 1.25463 0.98943 0.94363 0.94113 1.69610 1.37696 1.23634 1.14209 0.86960 0.82884 0.79302 0.81741 1.17193 1.20685 1.17792 1.22637 0.92961 0.97490 1.06037 1.23013 1.01584 1.03225 0.92356 1.23030 1.02273 0.96422 0.99990 0.76943 0.87993 0.88078 0.84332 0.87053 0.87174 0.86875 0.86277 0.90257 0.86415 0.88792 0.87396 0.88568 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.43 19.25 29.55 0.57 -2.87 16 2 C -0.18 -3.10 13.03 -37.12 -0.48 -3.58 16 3 C 0.00 -0.07 5.42 -29.51 -0.16 -0.23 16 4 C 0.11 1.87 2.50 -26.73 -0.07 1.81 16 5 H 0.09 1.59 6.81 -51.93 -0.35 1.24 16 6 O -0.31 -6.43 5.76 -40.95 -0.24 -6.67 16 7 C 0.54 12.00 7.29 34.15 0.25 12.25 16 8 O -0.52 -11.56 15.26 -19.34 -0.30 -11.86 16 9 C -0.01 -0.27 6.76 -82.27 -0.56 -0.83 16 10 C -0.16 -3.38 10.55 -39.00 -0.41 -3.80 16 11 C -0.13 -2.74 6.16 -106.89 -0.66 -3.40 16 12 C -0.08 -1.40 10.06 -39.51 -0.40 -1.79 16 13 C -0.16 -2.70 9.97 -39.95 -0.40 -3.10 16 14 C -0.13 -2.42 10.02 -39.50 -0.40 -2.82 16 15 C -0.10 -2.15 6.90 -39.41 -0.27 -2.42 16 16 C 0.06 1.36 5.14 -83.84 -0.43 0.93 16 17 N -0.26 -6.31 2.37 -56.10 -0.13 -6.44 16 18 C -0.34 -8.68 9.07 -15.01 -0.14 -8.81 16 19 H 0.13 3.52 7.15 -52.49 -0.38 3.14 16 20 C 0.09 2.18 4.98 -17.47 -0.09 2.10 16 21 N -0.82 -21.28 13.95 55.50 0.77 -20.50 16 22 Si 0.87 20.36 24.28 -169.99 -4.13 16.23 16 23 H -0.25 -5.46 5.79 56.52 0.33 -5.14 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.25 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.17 -2.39 5.72 -90.62 -0.52 -2.90 16 27 C -0.16 -2.47 9.88 -26.69 -0.26 -2.73 16 28 C -0.18 -2.56 10.10 -26.70 -0.27 -2.83 16 29 H 0.21 2.81 7.80 -54.08 -0.42 2.39 16 30 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.14 2.70 8.06 -52.49 -0.42 2.27 16 33 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.12 2.65 6.04 -52.49 -0.32 2.33 16 37 H 0.29 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.12 1.27 8.10 -51.93 -0.42 0.85 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.11 1.97 7.02 -51.93 -0.36 1.61 16 41 H 0.10 1.60 6.92 -51.93 -0.36 1.24 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -29.01 357.39 -8.52 -37.53 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.20 Total: 11.33 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -4.69 Total: -25.01 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.64 Total: -26.94 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.53 Total: -18.52 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.13 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.01 -8.52 -37.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750774393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.880 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds