Wall clock time and date at job start Tue Mar 31 2020 14:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46644 * 188.79637 * 3 2 1 5 5 H 1.08995 * 109.46882 * 58.02022 * 4 3 2 6 6 O 1.45201 * 109.47017 * 298.01573 * 4 3 2 7 7 C 1.34866 * 116.99598 * 139.59066 * 6 4 3 8 8 O 1.21597 * 120.00031 * 356.42038 * 7 6 4 9 9 C 1.46708 * 120.00057 * 176.42149 * 7 6 4 10 10 C 1.36219 * 125.45262 * 185.53502 * 9 7 6 11 11 C 1.41658 * 107.74425 * 179.84661 * 10 9 7 12 12 C 1.40043 * 133.33733 * 180.18556 * 11 10 9 13 13 C 1.36565 * 119.82986 * 180.30767 * 12 11 10 14 14 C 1.38861 * 120.60262 * 359.95921 * 13 12 11 15 15 C 1.37837 * 120.63605 * 0.02562 * 14 13 12 16 16 C 1.39090 * 119.82084 * 0.02562 * 15 14 13 17 17 N 1.37818 * 133.15516 * 180.02562 * 16 15 14 18 18 C 1.36871 * 125.62149 * 359.97438 * 17 16 15 19 19 H 1.07993 * 120.00348 * 134.84488 * 18 17 16 20 20 C 1.39031 * 120.00148 * 314.84763 * 18 17 16 21 21 N 1.31339 * 119.99905 * 162.77770 * 20 18 17 22 22 Si 1.86803 * 119.99699 * 342.77776 * 20 18 17 23 23 H 1.48505 * 109.47025 * 96.00666 * 22 20 18 24 24 H 1.48494 * 109.47121 * 216.00338 * 22 20 18 25 25 H 1.48500 * 109.47502 * 336.00872 * 22 20 18 26 26 C 1.52998 * 109.46853 * 178.01862 * 4 3 2 27 27 C 1.53007 * 117.49847 * 113.21738 * 26 4 3 28 28 C 1.52992 * 117.50017 * 181.87965 * 26 4 3 29 29 H 4.44652 * 5.63369 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47368 * 68.80252 * 3 2 1 31 31 H 1.08990 * 109.47352 * 308.79682 * 3 2 1 32 32 H 1.08001 * 126.12011 * 359.97438 * 10 9 7 33 33 H 1.08009 * 120.08548 * 0.31274 * 12 11 10 34 34 H 1.08003 * 119.69905 * 179.97438 * 13 12 11 35 35 H 1.07998 * 119.68283 * 180.02562 * 14 13 12 36 36 H 1.08001 * 120.09332 * 180.02562 * 15 14 13 37 37 H 0.97008 * 119.99517 * 185.00749 * 21 20 18 38 38 H 1.09005 * 115.54956 * 327.55414 * 26 4 3 39 39 H 1.09003 * 117.49625 * 215.00572 * 27 26 4 40 40 H 1.08996 * 117.49619 * 0.02562 * 27 26 4 41 41 H 1.09000 * 117.49648 * 359.97384 * 28 26 4 42 42 H 1.09001 * 117.50425 * 145.00014 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4266 0.2206 5 1 2.7630 1.8108 1.1621 6 8 2.7099 2.2739 -0.8712 7 6 2.2959 3.5170 -0.5517 8 8 2.2453 3.8603 0.6137 9 6 1.9065 4.4552 -1.6102 10 6 1.5755 5.7634 -1.4241 11 6 1.2679 6.3155 -2.6918 12 6 0.8732 7.5910 -3.1145 13 6 0.6370 7.8248 -4.4391 14 6 0.7853 6.8086 -5.3737 15 6 1.1730 5.5452 -4.9821 16 6 1.4183 5.2823 -3.6385 17 7 1.8093 4.1510 -2.9554 18 6 2.0620 2.9284 -3.5165 19 1 2.9403 2.3717 -3.2251 20 6 1.1880 2.4033 -4.4616 21 7 1.5770 1.4206 -5.2413 22 14 -0.5396 3.0954 -4.6224 23 1 -0.5683 4.1074 -5.7088 24 1 -1.4851 1.9965 -4.9444 25 1 -0.9388 3.7326 -3.3418 26 6 4.6844 1.4199 0.2700 27 6 5.4310 2.1230 -0.8656 28 6 5.3887 2.7533 0.5287 29 1 -1.0503 -0.0004 -0.0003 30 1 3.0096 -0.3708 -0.9581 31 1 3.0096 -0.6430 0.8008 32 1 1.5537 6.2864 -0.4794 33 1 0.7560 8.3877 -2.3947 34 1 0.3324 8.8091 -4.7627 35 1 0.5950 7.0101 -6.4176 36 1 1.2860 4.7614 -5.7165 37 1 0.9941 1.1029 -5.9486 38 1 5.1374 0.5217 0.6897 39 1 6.3750 1.6873 -1.1929 40 1 4.8326 2.5905 -1.6475 41 1 4.7626 3.6353 0.6634 42 1 6.3050 2.7324 1.1187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750774393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:55 Heat of formation + Delta-G solvation = 46.432127 kcal Electronic energy + Delta-G solvation = -27584.817645 eV Core-core repulsion = 23883.619668 eV Total energy + Delta-G solvation = -3701.197977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56270 -41.39248 -38.73923 -37.81738 -36.74344 -35.41333 -35.20901 -33.16175 -31.56226 -30.89296 -30.07271 -26.76803 -26.17465 -25.02747 -23.36653 -22.83432 -22.51353 -21.28657 -20.91634 -20.11749 -19.14104 -18.94852 -17.91125 -17.63018 -17.31966 -16.77266 -16.27432 -16.08259 -15.83271 -15.40670 -15.13808 -14.93633 -14.75535 -14.73111 -14.39240 -14.36273 -14.01026 -13.72863 -13.32380 -13.16572 -13.12568 -12.76952 -12.52203 -12.46551 -12.32274 -12.01205 -11.87292 -11.82515 -11.56125 -11.54174 -11.32169 -11.17592 -11.05076 -10.86188 -10.47911 -9.11013 -8.83012 -8.68834 -6.51255 -0.22418 0.84573 0.98189 1.12572 1.19904 1.29096 1.60889 1.77063 1.85666 1.97980 2.11179 2.41935 2.70325 2.80233 3.10559 3.32659 3.69690 3.77069 3.82757 3.90405 3.97917 4.14634 4.23865 4.26412 4.32810 4.42954 4.52494 4.57979 4.65434 4.72571 4.74178 4.80815 4.92298 4.98116 5.05522 5.06245 5.14838 5.22126 5.23460 5.36434 5.39673 5.65605 5.76398 5.82915 5.91680 6.09128 6.37234 6.62654 6.67394 6.85933 7.16420 8.26355 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.005677 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.199011 B = 4930.843923 C = 5888.912759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.210 4.210 3 C -0.002 4.002 4 C 0.104 3.896 5 H 0.084 0.916 6 O -0.327 6.327 7 C 0.544 3.456 8 O -0.532 6.532 9 C -0.040 4.040 10 C -0.148 4.148 11 C -0.145 4.145 12 C -0.071 4.071 13 C -0.149 4.149 14 C -0.107 4.107 15 C -0.142 4.142 16 C 0.042 3.958 17 N -0.282 5.282 18 C -0.346 4.346 19 H 0.102 0.898 20 C 0.059 3.941 21 N -0.859 5.859 22 Si 0.910 3.090 23 H -0.224 1.224 24 H -0.276 1.276 25 H -0.284 1.284 26 C -0.160 4.160 27 C -0.177 4.177 28 C -0.175 4.175 29 H 0.237 0.763 30 H 0.096 0.904 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.292 0.708 38 H 0.162 0.838 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 2.611 5.674 6.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.210 4.210 3 C -0.038 4.038 4 C 0.050 3.950 5 H 0.102 0.898 6 O -0.242 6.242 7 C 0.392 3.608 8 O -0.424 6.424 9 C -0.151 4.151 10 C -0.175 4.175 11 C -0.150 4.150 12 C -0.090 4.090 13 C -0.168 4.168 14 C -0.127 4.127 15 C -0.162 4.162 16 C -0.071 4.071 17 N 0.053 4.947 18 C -0.473 4.473 19 H 0.120 0.880 20 C -0.151 4.151 21 N -0.490 5.490 22 Si 0.733 3.267 23 H -0.147 1.147 24 H -0.202 1.202 25 H -0.209 1.209 26 C -0.178 4.178 27 C -0.214 4.214 28 C -0.212 4.212 29 H 0.254 0.746 30 H 0.114 0.886 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.167 0.833 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.179 0.821 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.865 2.035 5.771 6.397 hybrid contribution -0.936 -0.404 -0.157 1.031 sum 0.929 1.631 5.614 5.920 Atomic orbital electron populations 1.25613 0.97088 0.99853 1.01221 1.23603 0.95682 1.01207 1.00509 1.19015 0.84228 0.94702 1.05890 1.22485 0.93730 0.89283 0.89527 0.89787 1.86994 1.73902 1.23769 1.39570 1.19949 0.73002 0.81062 0.86819 1.90740 1.53998 1.77833 1.19864 1.19716 1.16503 0.95488 0.83433 1.20776 1.06890 0.91837 0.98000 1.18357 1.09134 0.95216 0.92249 1.20655 0.97578 0.93679 0.97045 1.20920 1.03511 1.00147 0.92192 1.21158 0.99366 0.91127 1.01010 1.20340 1.04918 0.98902 0.92033 1.18929 1.06889 0.86593 0.94712 1.40368 1.44032 1.07190 1.03108 1.19188 1.10393 0.94274 1.23467 0.88029 1.25831 1.00684 0.94580 0.94030 1.69643 1.38745 1.25184 1.15446 0.86362 0.80312 0.79260 0.80753 1.14713 1.20183 1.20916 1.22799 0.91062 0.98969 1.04966 1.22922 1.02313 1.04297 0.91834 1.23041 1.03105 0.95507 0.99575 0.74645 0.88582 0.83503 0.82260 0.83366 0.82299 0.83321 0.87721 0.89760 0.82092 0.86302 0.91780 0.91616 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.50 19.25 74.32 1.43 -6.07 16 2 C -0.21 -7.38 13.03 31.12 0.41 -6.98 16 3 C 0.00 -0.07 5.42 28.79 0.16 0.09 16 4 C 0.10 3.49 2.50 30.60 0.08 3.56 16 5 H 0.08 2.94 6.81 -2.39 -0.02 2.93 16 6 O -0.33 -14.28 5.76 -57.80 -0.33 -14.62 16 7 C 0.54 25.27 7.29 70.03 0.51 25.78 16 8 O -0.53 -24.41 15.26 19.52 0.30 -24.11 16 9 C -0.04 -1.95 6.76 39.87 0.27 -1.68 16 10 C -0.15 -6.46 10.55 22.64 0.24 -6.23 16 11 C -0.15 -6.16 6.16 -21.34 -0.13 -6.29 16 12 C -0.07 -2.34 10.06 22.32 0.22 -2.11 16 13 C -0.15 -4.36 9.97 22.03 0.22 -4.14 16 14 C -0.11 -3.55 10.02 22.32 0.22 -3.33 16 15 C -0.14 -6.08 6.90 22.38 0.15 -5.93 16 16 C 0.04 2.02 5.14 39.07 0.20 2.22 16 17 N -0.28 -14.55 2.37 -331.41 -0.79 -15.34 16 18 C -0.35 -19.02 9.07 84.10 0.76 -18.25 16 19 H 0.10 6.00 7.15 -2.91 -0.02 5.98 16 20 C 0.06 3.18 4.98 84.96 0.42 3.61 16 21 N -0.86 -46.67 13.95 21.67 0.30 -46.37 16 22 Si 0.91 43.22 24.28 68.60 1.67 44.88 16 23 H -0.22 -9.64 5.79 99.48 0.58 -9.06 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16 26 C -0.16 -4.29 5.72 -10.79 -0.06 -4.35 16 27 C -0.18 -5.40 9.88 30.62 0.30 -5.10 16 28 C -0.18 -4.91 10.10 30.62 0.31 -4.60 16 29 H 0.24 6.28 7.80 -4.40 -0.03 6.25 16 30 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.16 6.09 8.06 -2.91 -0.02 6.06 16 33 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.10 4.72 6.04 -2.91 -0.02 4.70 16 37 H 0.29 14.53 8.31 -92.70 -0.77 13.76 16 38 H 0.16 2.92 8.10 -2.38 -0.02 2.90 16 39 H 0.12 2.97 8.14 -2.39 -0.02 2.96 16 40 H 0.06 2.56 7.02 -2.39 -0.02 2.54 16 41 H 0.07 2.26 6.92 -2.39 -0.02 2.24 16 42 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -68.58 357.39 7.77 -60.81 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.91 Total: 34.54 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 5.72 Total: -39.79 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.48 Total: -61.71 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.03 Total: -38.73 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.67 Total: 44.88 kcal Total: -68.58 7.77 -60.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750774393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.240 kcal (2) G-P(sol) polarization free energy of solvation -68.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds