Wall clock time and date at job start Tue Mar 31 2020 14:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46934 * 205.25176 * 3 2 1 5 5 H 1.09006 * 109.47078 * 303.38101 * 4 3 2 6 6 O 1.45195 * 109.47136 * 63.38138 * 4 3 2 7 7 C 1.34865 * 117.00081 * 217.61644 * 6 4 3 8 8 O 1.21589 * 120.00027 * 1.94593 * 7 6 4 9 9 C 1.46715 * 120.00287 * 181.93925 * 7 6 4 10 10 C 1.36212 * 125.45199 * 184.78081 * 9 7 6 11 11 C 1.41661 * 107.74592 * 180.02562 * 10 9 7 12 12 C 1.40040 * 133.34234 * 180.02562 * 11 10 9 13 13 C 1.36569 * 119.82996 * 179.29735 * 12 11 10 14 14 C 1.38863 * 120.59963 * 0.60538 * 13 12 11 15 15 C 1.37833 * 120.63933 * 359.62098 * 14 13 12 16 16 C 1.39089 * 119.81776 * 359.97438 * 15 14 13 17 17 N 1.37820 * 133.15393 * 180.02562 * 16 15 14 18 18 C 1.36879 * 125.62035 * 0.02562 * 17 16 15 19 19 H 1.07994 * 119.99943 * 142.19749 * 18 17 16 20 20 C 1.39026 * 119.99810 * 322.19883 * 18 17 16 21 21 N 1.31343 * 119.99862 * 337.25168 * 20 18 17 22 22 Si 1.86795 * 119.99872 * 156.97600 * 20 18 17 23 23 H 1.48496 * 109.47098 * 185.26083 * 22 20 18 24 24 H 1.48504 * 109.47092 * 305.26127 * 22 20 18 25 25 H 1.48498 * 109.47121 * 65.26035 * 22 20 18 26 26 C 1.52995 * 109.47140 * 183.38265 * 4 3 2 27 27 C 1.53006 * 117.49928 * 248.74518 * 26 4 3 28 28 C 1.53003 * 117.49998 * 180.08689 * 26 4 3 29 29 H 4.44651 * 5.63349 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47441 * 85.25829 * 3 2 1 31 31 H 1.08996 * 109.47529 * 325.24996 * 3 2 1 32 32 H 1.07997 * 126.12569 * 0.02562 * 10 9 7 33 33 H 1.08001 * 120.08129 * 359.97438 * 12 11 10 34 34 H 1.07996 * 119.70247 * 180.25088 * 13 12 11 35 35 H 1.08001 * 119.67942 * 179.63522 * 14 13 12 36 36 H 1.08007 * 120.09403 * 179.97438 * 15 14 13 37 37 H 0.97004 * 120.00311 * 354.39205 * 21 20 18 38 38 H 1.08999 * 115.55444 * 34.41745 * 26 4 3 39 39 H 1.08998 * 117.49447 * 359.97438 * 27 26 4 40 40 H 1.08995 * 117.49772 * 145.01960 * 27 26 4 41 41 H 1.08992 * 117.50001 * 214.97719 * 28 26 4 42 42 H 1.09002 * 117.49789 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1553 1.3056 0.6154 5 1 2.7429 2.1518 0.0658 6 8 2.7383 1.3810 2.0042 7 6 2.3769 2.5939 2.4700 8 8 2.3756 3.5554 1.7257 9 6 1.9850 2.7533 3.8748 10 6 1.5144 3.9006 4.4384 11 6 1.2553 3.6353 5.8056 12 6 0.7692 4.4168 6.8611 13 6 0.6100 3.8630 8.0993 14 6 0.9378 2.5328 8.3260 15 6 1.4224 1.7447 7.3043 16 6 1.5853 2.2840 6.0326 17 7 2.0352 1.7633 4.8385 18 6 2.4569 0.4766 4.6383 19 1 2.2215 -0.0313 3.7148 20 6 3.1883 -0.1765 5.6240 21 7 3.8525 0.5192 6.5184 22 14 3.2199 -2.0433 5.6809 23 1 3.9586 -2.4893 6.8895 24 1 1.8289 -2.5607 5.7319 25 1 3.8975 -2.5641 4.4664 26 6 4.6829 1.3434 0.5388 27 6 5.4589 1.2406 1.8534 28 6 5.3885 2.5758 1.1083 29 1 -1.0502 -0.0005 0.0000 30 1 3.0094 -0.0841 -1.0241 31 1 3.0097 -0.8435 0.5857 32 1 1.3654 4.8435 3.9334 33 1 0.5106 5.4520 6.6937 34 1 0.2312 4.4665 8.9108 35 1 0.8115 2.1116 9.3125 36 1 1.6749 0.7112 7.4907 37 1 3.9000 1.4852 6.4440 38 1 5.1212 0.8749 -0.3423 39 1 4.8811 1.1464 2.7728 40 1 6.4079 0.7046 1.8370 41 1 6.2912 2.9177 0.6020 42 1 4.7644 3.3599 1.5371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750774424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:59 Heat of formation + Delta-G solvation = 47.581965 kcal Electronic energy + Delta-G solvation = -27569.619947 eV Core-core repulsion = 23868.471831 eV Total energy + Delta-G solvation = -3701.148116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76948 -39.80911 -37.25668 -36.11321 -35.31108 -34.03857 -33.84344 -30.64688 -30.30391 -29.15717 -28.22010 -24.86735 -24.67328 -23.53567 -22.11419 -21.15591 -20.80755 -19.89310 -19.44274 -18.39948 -17.98253 -17.23024 -16.48761 -15.86368 -15.66729 -15.02784 -14.79274 -14.47915 -14.12526 -13.85096 -13.67428 -13.50109 -13.15480 -13.12487 -13.05151 -12.60566 -12.22466 -12.03512 -11.88031 -11.62595 -11.22417 -11.13383 -10.93436 -10.62629 -10.50231 -10.45304 -10.37496 -10.33266 -10.16518 -10.02134 -9.93733 -9.75051 -9.66006 -9.17500 -8.85334 -7.57322 -7.12425 -6.84910 -4.53682 1.53632 2.58744 2.78488 2.90099 2.98994 3.07628 3.11790 3.20570 3.29565 3.81434 3.98855 4.00563 4.34199 4.42356 4.64290 4.86567 4.87163 5.01932 5.13258 5.25637 5.34146 5.42581 5.52023 5.68159 5.82158 5.85857 5.91008 5.94666 6.03786 6.06443 6.16446 6.25065 6.34821 6.37057 6.49700 6.59013 6.71566 6.87163 6.92674 6.95150 7.30342 7.38803 7.46501 7.67937 7.72693 7.77592 7.79406 8.11734 8.42383 8.72253 9.03392 10.04238 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.005632 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.690534 B = 4970.624242 C = 5890.583153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C -0.005 4.005 4 C 0.116 3.884 5 H 0.091 0.909 6 O -0.319 6.319 7 C 0.545 3.455 8 O -0.526 6.526 9 C -0.027 4.027 10 C -0.166 4.166 11 C -0.126 4.126 12 C -0.083 4.083 13 C -0.155 4.155 14 C -0.141 4.141 15 C -0.072 4.072 16 C 0.051 3.949 17 N -0.239 5.239 18 C -0.411 4.411 19 H 0.116 0.884 20 C 0.025 3.975 21 N -0.816 5.816 22 Si 1.075 2.925 23 H -0.272 1.272 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.176 4.176 27 C -0.165 4.165 28 C -0.180 4.180 29 H 0.215 0.785 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.290 0.710 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -1.720 -6.744 6.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.183 4.183 3 C -0.042 4.042 4 C 0.060 3.940 5 H 0.109 0.891 6 O -0.235 6.235 7 C 0.393 3.607 8 O -0.416 6.416 9 C -0.140 4.140 10 C -0.193 4.193 11 C -0.131 4.131 12 C -0.102 4.102 13 C -0.174 4.174 14 C -0.161 4.161 15 C -0.092 4.092 16 C -0.064 4.064 17 N 0.100 4.900 18 C -0.539 4.539 19 H 0.133 0.867 20 C -0.191 4.191 21 N -0.442 5.442 22 Si 0.897 3.103 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.199 1.199 26 C -0.194 4.194 27 C -0.202 4.202 28 C -0.217 4.217 29 H 0.232 0.768 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.392 -3.080 -6.220 6.952 hybrid contribution -0.620 1.448 -1.042 1.888 sum -0.227 -1.632 -7.262 7.446 Atomic orbital electron populations 1.24833 0.95920 1.00342 1.01186 1.22870 0.94362 1.00841 1.00272 1.18821 0.85336 0.98295 1.01708 1.22060 0.92219 0.98240 0.81460 0.89100 1.86947 1.76102 1.32562 1.27924 1.20018 0.72908 0.80859 0.86894 1.90770 1.53026 1.40259 1.57594 1.19100 1.16959 0.90179 0.87734 1.20290 1.09746 0.96439 0.92798 1.17897 1.07618 0.93932 0.93646 1.20097 0.99952 0.98059 0.92052 1.20334 1.05110 0.95510 0.96494 1.20591 1.03620 0.94205 0.97711 1.20256 0.99092 0.99944 0.89876 1.18322 1.05268 0.93766 0.89030 1.40296 1.37254 1.07416 1.05063 1.20979 1.37431 0.86743 1.08726 0.86658 1.26870 0.91516 1.08734 0.91960 1.70620 1.29001 1.11393 1.33185 0.83427 0.77727 0.71410 0.77694 1.19618 1.20065 1.19936 1.22630 0.92858 1.04551 0.99391 1.23063 1.01295 0.99391 0.96445 1.23037 1.02295 0.92103 1.04286 0.76776 0.87901 0.88127 0.84861 0.87501 0.87573 0.87221 0.86170 0.89754 0.86564 0.86846 0.88953 0.88906 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.02 19.25 29.55 0.57 -2.45 16 2 C -0.18 -2.85 13.07 -37.12 -0.49 -3.34 16 3 C -0.01 -0.07 5.42 -29.51 -0.16 -0.23 16 4 C 0.12 1.87 2.46 -26.73 -0.07 1.81 16 5 H 0.09 1.56 6.90 -51.93 -0.36 1.20 16 6 O -0.32 -6.49 5.63 -40.94 -0.23 -6.72 16 7 C 0.54 12.26 7.14 34.15 0.24 12.50 16 8 O -0.53 -11.95 14.90 -19.33 -0.29 -12.24 16 9 C -0.03 -0.64 6.76 -82.27 -0.56 -1.20 16 10 C -0.17 -3.83 10.55 -39.01 -0.41 -4.24 16 11 C -0.13 -2.92 6.16 -106.89 -0.66 -3.58 16 12 C -0.08 -1.65 10.06 -39.51 -0.40 -2.05 16 13 C -0.16 -2.90 9.97 -39.95 -0.40 -3.30 16 14 C -0.14 -2.79 10.02 -39.50 -0.40 -3.19 16 15 C -0.07 -1.66 8.51 -39.41 -0.34 -1.99 16 16 C 0.05 1.26 5.49 -83.83 -0.46 0.80 16 17 N -0.24 -6.00 2.62 -56.10 -0.15 -6.15 16 18 C -0.41 -10.16 8.80 -15.01 -0.13 -10.29 16 19 H 0.12 2.85 6.65 -52.49 -0.35 2.50 16 20 C 0.03 0.60 4.23 -17.47 -0.07 0.53 16 21 N -0.82 -20.85 11.83 55.50 0.66 -20.19 16 22 Si 1.07 20.94 29.98 -169.99 -5.10 15.85 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 26 C -0.18 -2.51 5.71 -90.62 -0.52 -3.03 16 27 C -0.17 -2.66 9.88 -26.69 -0.26 -2.92 16 28 C -0.18 -2.79 10.02 -26.69 -0.27 -3.06 16 29 H 0.22 2.40 7.80 -54.08 -0.42 1.98 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.13 2.81 8.06 -52.49 -0.42 2.39 16 33 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.12 2.85 6.51 -52.48 -0.34 2.51 16 37 H 0.29 7.88 7.05 -40.82 -0.29 7.59 16 38 H 0.12 1.29 8.11 -51.93 -0.42 0.86 16 39 H 0.11 2.28 7.04 -51.93 -0.37 1.91 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.10 1.79 6.38 -51.93 -0.33 1.46 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -28.49 361.02 -9.49 -37.98 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.06 Total: 15.27 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -4.77 Total: -29.23 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.51 Total: -26.34 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.52 Total: -18.96 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.10 Total: 15.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.49 -9.49 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750774424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.557 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds