Wall clock time and date at job start Tue Mar 31 2020 14:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47026 * 2 1 4 4 C 1.53007 * 109.47110 * 119.99411 * 2 1 3 5 5 N 1.46503 * 109.46865 * 65.00347 * 4 2 1 6 6 C 1.46503 * 119.99855 * 270.00004 * 5 4 2 7 7 C 1.50697 * 109.46720 * 269.99812 * 6 5 4 8 8 H 1.07994 * 120.00418 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99814 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99997 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99725 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47312 * 89.99880 * 11 9 7 13 13 H 1.48504 * 109.46570 * 209.99597 * 11 9 7 14 14 H 1.48498 * 109.47021 * 329.99295 * 11 9 7 15 15 C 1.34777 * 119.99884 * 89.99714 * 5 4 2 16 16 O 1.21802 * 119.99620 * 179.97438 * 15 5 4 17 17 C 1.41274 * 120.00051 * 359.97438 * 15 5 4 18 18 C 1.35115 * 119.99705 * 179.97438 * 17 15 5 19 19 S 1.76193 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.81002 * 100.00049 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47156 * 180.02562 * 20 19 18 22 22 C 1.34518 * 125.78832 * 89.71552 * 21 20 19 23 23 C 1.41377 * 106.83972 * 179.88997 * 22 21 20 24 24 C 1.34513 * 106.84156 * 0.37021 * 23 22 21 25 25 O 1.34300 * 125.78840 * 270.02634 * 21 20 19 26 26 H 1.08999 * 109.46642 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47242 * 299.99993 * 1 2 3 28 28 H 1.09001 * 109.47128 * 60.00298 * 1 2 3 29 29 H 1.08996 * 109.47616 * 239.99470 * 2 1 3 30 30 H 1.08999 * 109.46873 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46609 * 299.99400 * 3 2 1 32 32 H 1.09001 * 109.46911 * 59.99425 * 3 2 1 33 33 H 1.08996 * 109.47393 * 305.00547 * 4 2 1 34 34 H 1.09003 * 109.47223 * 185.00036 * 4 2 1 35 35 H 1.08998 * 109.47263 * 30.00094 * 6 5 4 36 36 H 1.08999 * 109.46827 * 150.00445 * 6 5 4 37 37 H 0.97000 * 119.99763 * 180.02562 * 10 9 7 38 38 H 1.07994 * 120.00194 * 0.02562 * 17 15 5 39 39 H 1.08005 * 119.99823 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47115 * 60.00094 * 20 19 18 41 41 H 1.09001 * 109.46925 * 300.00251 * 20 19 18 42 42 H 1.08007 * 126.57748 * 0.02871 * 22 21 20 43 43 H 1.07997 * 126.57885 * 180.16682 * 23 22 21 44 44 H 1.08002 * 125.78655 * 179.74823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6525 -2.1328 1.1907 6 6 0.3746 -2.5658 1.7614 7 6 0.5717 -2.9407 3.2077 8 1 1.5507 -2.8636 3.6569 9 6 -0.4982 -3.3810 3.9577 10 7 -0.3262 -3.7086 5.2197 11 14 -2.1919 -3.5137 3.1807 12 1 -2.3635 -4.8677 2.5958 13 1 -3.2309 -3.2868 4.2172 14 1 -2.3275 -2.4918 2.1119 15 6 2.4716 -3.0330 0.6118 16 8 2.1496 -4.2066 0.5635 17 6 3.7036 -2.6152 0.0609 18 6 4.5250 -3.5178 -0.5190 19 16 4.0592 -5.2156 -0.5889 20 6 5.4990 -5.9016 -1.4448 21 6 5.3176 -7.3871 -1.6216 22 6 4.7302 -7.9884 -2.6718 23 6 4.7789 -9.3799 -2.4270 24 6 5.3858 -9.5454 -1.2380 25 8 5.7099 -8.3349 -0.7548 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2953 35 1 -0.3484 -1.7531 1.6919 36 1 0.0043 -3.4298 1.2094 37 1 -1.0788 -4.0188 5.7472 38 1 3.9893 -1.5746 0.1041 39 1 5.4671 -3.1985 -0.9398 40 1 6.3962 -5.7123 -0.8554 41 1 5.5999 -5.4293 -2.4220 42 1 4.3051 -7.5015 -3.5372 43 1 4.3985 -10.1602 -3.0695 44 1 5.5792 -10.4913 -0.7539 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754222640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:45 Heat of formation + Delta-G solvation = 4.238545 kcal Electronic energy + Delta-G solvation = -24611.839225 eV Core-core repulsion = 21044.255549 eV Total energy + Delta-G solvation = -3567.583677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61291 -39.54413 -36.56512 -33.70164 -33.26109 -32.71376 -32.15749 -31.97085 -28.53473 -26.94415 -26.83677 -25.67055 -23.96005 -21.83810 -21.42924 -20.56141 -20.21418 -18.55519 -17.40503 -17.17414 -16.90144 -16.42964 -15.99719 -14.96238 -14.79219 -14.68702 -14.47904 -14.14828 -13.99919 -13.78747 -13.46312 -13.13758 -12.91043 -12.83248 -12.61817 -12.34045 -12.21950 -12.14303 -11.93498 -11.74709 -11.33455 -11.17011 -10.96811 -10.65482 -10.55564 -10.44080 -10.30034 -10.26402 -10.02563 -9.98832 -9.46072 -8.87953 -8.53775 -8.26919 -7.82573 -7.18093 -6.04125 -4.02023 1.23242 1.34781 2.07121 2.51103 2.73299 2.90138 3.31912 3.37668 3.40002 3.90924 3.99130 4.43402 4.48787 4.79607 4.92327 4.93373 5.03859 5.09554 5.11854 5.24523 5.28506 5.28628 5.48083 5.69691 5.70578 5.77890 5.81629 5.82551 5.97186 5.98645 6.03694 6.07597 6.10757 6.16768 6.24188 6.39263 6.49746 6.56134 6.81162 7.00767 7.03911 7.40224 7.66902 8.29324 8.51693 8.94498 9.01827 9.56464 11.09450 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011095 B = 0.003553 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.118486 B = 7879.513007 C = 9646.699955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.583 5.583 6 C 0.213 3.787 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.530 3.470 16 O -0.517 6.517 17 C -0.201 4.201 18 C -0.121 4.121 19 S 0.061 5.939 20 C -0.118 4.118 21 C 0.011 3.989 22 C -0.197 4.197 23 C -0.215 4.215 24 C -0.038 4.038 25 O -0.171 6.171 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 1.111 -16.627 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.312 5.312 6 C 0.092 3.908 7 C -0.564 4.564 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.320 3.680 16 O -0.399 6.399 17 C -0.237 4.237 18 C -0.257 4.257 19 S 0.307 5.693 20 C -0.263 4.263 21 C -0.040 4.040 22 C -0.219 4.219 23 C -0.234 4.234 24 C -0.106 4.106 25 O -0.068 6.068 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.678 -0.155 -15.837 19.101 hybrid contribution 0.216 0.642 -0.796 1.045 sum 10.894 0.487 -16.633 19.889 Atomic orbital electron populations 1.21942 0.94973 1.02699 1.01121 1.21608 0.96867 0.95947 0.99019 1.21779 1.00629 0.95907 1.01812 1.21608 0.99487 0.81829 0.97967 1.47704 1.21058 1.06470 1.55967 1.19760 0.80667 0.95714 0.94618 1.21346 0.97387 1.44359 0.93340 0.90798 1.24842 0.98773 0.94645 0.94684 1.69899 1.31544 1.44891 1.07361 0.86893 0.84436 0.79347 0.79299 1.19921 1.21136 1.19016 1.16972 0.85019 0.86034 0.79926 1.90600 1.73721 1.16766 1.58832 1.21785 0.96675 1.00273 1.05011 1.25977 1.01427 0.98388 0.99862 1.88445 1.16795 0.97758 1.66304 1.22714 1.06679 0.90395 1.06559 1.21363 1.02800 0.89566 0.90311 1.21572 1.05498 0.93909 1.00934 1.21820 1.06012 0.96778 0.98760 1.24055 1.03183 0.87240 0.96168 1.84028 1.64024 1.14980 1.43719 0.91686 0.92471 0.93445 0.91297 0.92831 0.92838 0.92423 0.89742 0.91174 0.94650 0.94699 0.92644 0.84516 0.84287 0.88442 0.87451 0.83314 0.83373 0.78013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.18 37.16 0.30 -1.83 16 2 C -0.11 -1.49 3.13 -90.61 -0.28 -1.77 16 3 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 4 C 0.12 1.81 4.58 -4.04 -0.02 1.79 16 5 N -0.58 -11.92 2.28 -178.58 -0.41 -12.32 16 6 C 0.21 5.19 3.30 -5.19 -0.02 5.17 16 7 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 8 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 11 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 12 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 15 C 0.53 10.86 7.42 -15.11 -0.11 10.75 16 16 O -0.52 -12.51 12.91 5.10 0.07 -12.45 16 17 C -0.20 -3.09 9.10 -39.54 -0.36 -3.44 16 18 C -0.12 -1.63 10.08 29.62 0.30 -1.33 16 19 S 0.06 0.98 18.59 -107.50 -2.00 -1.02 16 20 C -0.12 -1.36 6.20 36.01 0.22 -1.14 16 21 C 0.01 0.14 6.58 -35.62 -0.23 -0.09 16 22 C -0.20 -2.37 10.81 -39.70 -0.43 -2.80 16 23 C -0.21 -2.33 10.91 -39.70 -0.43 -2.76 16 24 C -0.04 -0.41 12.09 29.42 0.36 -0.05 16 25 O -0.17 -2.34 10.65 5.70 0.06 -2.28 16 26 H 0.06 1.09 5.89 -51.93 -0.31 0.78 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 34 H 0.07 0.94 6.08 -51.93 -0.32 0.62 16 35 H 0.04 0.82 5.03 -51.93 -0.26 0.56 16 36 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.14 1.65 6.08 -52.49 -0.32 1.33 16 39 H 0.14 1.28 8.03 -52.48 -0.42 0.86 16 40 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -35.33 375.30 -7.96 -43.30 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.64 Total: 1.36 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.80 Total: -12.12 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.37 Total: -39.56 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.13 Total: -14.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.00 Total: -1.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.33 -7.96 -43.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754222640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.534 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds