Wall clock time and date at job start Tue Mar 31 2020 14:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47026 * 2 1 4 4 C 1.53007 * 109.47110 * 119.99411 * 2 1 3 5 5 N 1.46503 * 109.46865 * 65.00347 * 4 2 1 6 6 C 1.46503 * 119.99855 * 270.00004 * 5 4 2 7 7 C 1.50697 * 109.46720 * 269.99812 * 6 5 4 8 8 H 1.07994 * 120.00418 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99814 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99997 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99725 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47312 * 89.99880 * 11 9 7 13 13 H 1.48504 * 109.46570 * 209.99597 * 11 9 7 14 14 H 1.48498 * 109.47021 * 329.99295 * 11 9 7 15 15 C 1.34777 * 119.99884 * 89.99714 * 5 4 2 16 16 O 1.21802 * 119.99620 * 179.97438 * 15 5 4 17 17 C 1.41274 * 120.00051 * 359.97438 * 15 5 4 18 18 C 1.35115 * 119.99705 * 179.97438 * 17 15 5 19 19 S 1.76193 * 120.00150 * 0.02562 * 18 17 15 20 20 C 1.81002 * 100.00049 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47156 * 180.02562 * 20 19 18 22 22 C 1.34518 * 125.78832 * 89.71552 * 21 20 19 23 23 C 1.41377 * 106.83972 * 179.88997 * 22 21 20 24 24 C 1.34513 * 106.84156 * 0.37021 * 23 22 21 25 25 O 1.34300 * 125.78840 * 270.02634 * 21 20 19 26 26 H 1.08999 * 109.46642 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47242 * 299.99993 * 1 2 3 28 28 H 1.09001 * 109.47128 * 60.00298 * 1 2 3 29 29 H 1.08996 * 109.47616 * 239.99470 * 2 1 3 30 30 H 1.08999 * 109.46873 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46609 * 299.99400 * 3 2 1 32 32 H 1.09001 * 109.46911 * 59.99425 * 3 2 1 33 33 H 1.08996 * 109.47393 * 305.00547 * 4 2 1 34 34 H 1.09003 * 109.47223 * 185.00036 * 4 2 1 35 35 H 1.08998 * 109.47263 * 30.00094 * 6 5 4 36 36 H 1.08999 * 109.46827 * 150.00445 * 6 5 4 37 37 H 0.97000 * 119.99763 * 180.02562 * 10 9 7 38 38 H 1.07994 * 120.00194 * 0.02562 * 17 15 5 39 39 H 1.08005 * 119.99823 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47115 * 60.00094 * 20 19 18 41 41 H 1.09001 * 109.46925 * 300.00251 * 20 19 18 42 42 H 1.08007 * 126.57748 * 0.02871 * 22 21 20 43 43 H 1.07997 * 126.57885 * 180.16682 * 23 22 21 44 44 H 1.08002 * 125.78655 * 179.74823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6525 -2.1328 1.1907 6 6 0.3746 -2.5658 1.7614 7 6 0.5717 -2.9407 3.2077 8 1 1.5507 -2.8636 3.6569 9 6 -0.4982 -3.3810 3.9577 10 7 -0.3262 -3.7086 5.2197 11 14 -2.1919 -3.5137 3.1807 12 1 -2.3635 -4.8677 2.5958 13 1 -3.2309 -3.2868 4.2172 14 1 -2.3275 -2.4918 2.1119 15 6 2.4716 -3.0330 0.6118 16 8 2.1496 -4.2066 0.5635 17 6 3.7036 -2.6152 0.0609 18 6 4.5250 -3.5178 -0.5190 19 16 4.0592 -5.2156 -0.5889 20 6 5.4990 -5.9016 -1.4448 21 6 5.3176 -7.3871 -1.6216 22 6 4.7302 -7.9884 -2.6718 23 6 4.7789 -9.3799 -2.4270 24 6 5.3858 -9.5454 -1.2380 25 8 5.7099 -8.3349 -0.7548 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2953 35 1 -0.3484 -1.7531 1.6919 36 1 0.0043 -3.4298 1.2094 37 1 -1.0788 -4.0188 5.7472 38 1 3.9893 -1.5746 0.1041 39 1 5.4671 -3.1985 -0.9398 40 1 6.3962 -5.7123 -0.8554 41 1 5.5999 -5.4293 -2.4220 42 1 4.3051 -7.5015 -3.5372 43 1 4.3985 -10.1602 -3.0695 44 1 5.5792 -10.4913 -0.7539 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754222640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:45 Heat of formation + Delta-G solvation = -17.677007 kcal Electronic energy + Delta-G solvation = -24612.789555 eV Core-core repulsion = 21044.255549 eV Total energy + Delta-G solvation = -3568.534006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.50692 -41.03734 -37.89415 -35.39916 -34.21510 -34.13564 -33.85525 -32.85802 -30.40387 -27.96678 -27.74753 -26.96622 -25.61227 -23.04196 -22.71773 -21.59564 -21.26688 -19.87885 -19.12488 -18.54935 -18.31785 -17.55238 -17.26533 -16.46648 -16.22363 -15.82742 -15.63534 -15.56162 -15.15382 -14.95409 -14.79245 -14.54982 -14.21141 -13.77292 -13.74343 -13.65095 -13.57704 -13.30535 -13.11060 -12.99308 -12.90248 -12.61682 -12.38176 -12.13729 -11.96825 -11.78045 -11.71390 -11.56382 -11.50180 -11.38747 -10.88833 -10.81603 -10.16029 -9.41873 -9.27078 -8.48522 -8.33546 -6.37251 0.16102 0.22117 1.11592 1.29698 1.34293 1.42258 1.51638 1.82233 2.06633 2.29945 2.44582 2.55391 3.00953 3.64863 3.85432 3.97643 4.01275 4.07282 4.10453 4.25823 4.29081 4.40850 4.41717 4.65798 4.69758 4.74268 4.85506 4.87842 4.90678 4.91634 4.97625 5.00677 5.10199 5.12737 5.15140 5.15817 5.30729 5.46303 5.47326 5.55617 5.56989 5.74343 6.15441 6.26954 6.63785 6.78206 7.22907 7.46671 8.83638 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011095 B = 0.003553 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.118486 B = 7879.513007 C = 9646.699955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.110 3.890 5 N -0.593 5.593 6 C 0.229 3.771 7 C -0.532 4.532 8 H 0.026 0.974 9 C 0.012 3.988 10 N -0.946 5.946 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.238 1.238 15 C 0.516 3.484 16 O -0.570 6.570 17 C -0.222 4.222 18 C -0.081 4.081 19 S -0.038 6.038 20 C -0.089 4.089 21 C -0.020 4.020 22 C -0.202 4.202 23 C -0.227 4.227 24 C -0.041 4.041 25 O -0.196 6.196 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.012 0.988 37 H 0.267 0.733 38 H 0.175 0.825 39 H 0.193 0.807 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.163 0.837 43 H 0.172 0.828 44 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 2.503 -19.451 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.195 4.195 4 C -0.013 4.013 5 N -0.322 5.322 6 C 0.106 3.894 7 C -0.571 4.571 8 H 0.045 0.955 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.162 1.162 15 C 0.309 3.691 16 O -0.455 6.455 17 C -0.257 4.257 18 C -0.217 4.217 19 S 0.209 5.791 20 C -0.235 4.235 21 C -0.071 4.071 22 C -0.224 4.224 23 C -0.246 4.246 24 C -0.109 4.109 25 O -0.093 6.093 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.192 0.808 39 H 0.210 0.790 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.180 0.820 43 H 0.190 0.810 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 11.825 1.299 -18.673 22.141 hybrid contribution 0.019 0.046 0.062 0.080 sum 11.843 1.346 -18.611 22.101 Atomic orbital electron populations 1.21953 0.96139 1.00862 1.02028 1.21530 0.95855 0.97619 0.97454 1.21735 1.01821 0.93443 1.02457 1.21898 1.01161 0.79310 0.98899 1.47785 1.19890 1.08644 1.55853 1.19324 0.83394 0.95294 0.91384 1.21602 0.95417 1.44263 0.95782 0.95517 1.25806 1.03538 0.94122 0.95098 1.70052 1.33156 1.46310 1.09121 0.85791 0.78783 0.79675 0.79204 1.20390 1.19796 1.16158 1.17858 0.86415 0.85335 0.79477 1.90615 1.75330 1.18802 1.60798 1.21771 0.94890 1.02447 1.06601 1.26338 1.02372 0.95652 0.97302 1.88854 1.21043 1.01529 1.67632 1.22598 1.03938 0.89495 1.07465 1.21721 1.04245 0.90258 0.90834 1.21938 1.04603 0.94725 1.01131 1.22212 1.06084 0.96988 0.99272 1.24848 1.02189 0.87546 0.96351 1.84013 1.64702 1.16044 1.44560 0.94780 0.92941 0.91185 0.90712 0.90943 0.91359 0.92630 0.91455 0.88484 0.93015 0.97037 0.92358 0.80788 0.79002 0.87044 0.84384 0.81967 0.81035 0.74747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.18 71.98 0.59 -3.53 16 2 C -0.11 -2.49 3.13 -10.79 -0.03 -2.52 16 3 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 4 C 0.11 3.35 4.58 86.38 0.40 3.75 16 5 N -0.59 -24.73 2.28 -837.09 -1.91 -26.64 16 6 C 0.23 11.51 3.30 85.63 0.28 11.79 16 7 C -0.53 -32.36 9.94 25.60 0.25 -32.10 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 9 C 0.01 0.74 5.47 84.66 0.46 1.20 16 10 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 11 Si 0.94 46.03 27.47 68.60 1.88 47.91 16 12 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 15 C 0.52 21.56 7.42 84.99 0.63 22.19 16 16 O -0.57 -28.97 12.91 -4.68 -0.06 -29.03 16 17 C -0.22 -6.41 9.10 22.30 0.20 -6.21 16 18 C -0.08 -1.98 10.08 67.10 0.68 -1.31 16 19 S -0.04 -1.20 18.59 -56.49 -1.05 -2.25 16 20 C -0.09 -1.89 6.20 71.24 0.44 -1.45 16 21 C -0.02 -0.50 6.58 24.83 0.16 -0.34 16 22 C -0.20 -4.62 10.81 22.19 0.24 -4.38 16 23 C -0.23 -4.60 10.91 22.19 0.24 -4.36 16 24 C -0.04 -0.85 12.09 66.97 0.81 -0.04 16 25 O -0.20 -5.28 10.65 -2.50 -0.03 -5.30 16 26 H 0.03 1.11 5.89 -2.39 -0.01 1.10 16 27 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 34 H 0.10 2.39 6.08 -2.39 -0.01 2.38 16 35 H 0.05 2.42 5.03 -2.39 -0.01 2.41 16 36 H 0.01 0.63 6.85 -2.39 -0.02 0.62 16 37 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 38 H 0.18 3.56 6.08 -2.91 -0.02 3.54 16 39 H 0.19 2.53 8.03 -2.91 -0.02 2.51 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 43 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.24 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -84.57 375.30 6.08 -78.48 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.93 Total: 16.90 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 6.02 Total: -18.93 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.61 Total: -87.77 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.09 Total: -34.33 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.88 Total: 47.91 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -1.05 Total: -2.25 kcal Total: -84.57 6.08 -78.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754222640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.805 kcal (2) G-P(sol) polarization free energy of solvation -84.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds