Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47015 * 2 1 4 4 C 1.53001 * 109.47070 * 119.99881 * 2 1 3 5 5 N 1.46509 * 109.47070 * 175.00266 * 4 2 1 6 6 C 1.46496 * 120.00024 * 269.99997 * 5 4 2 7 7 C 1.50694 * 109.47234 * 270.00175 * 6 5 4 8 8 H 1.08007 * 120.00008 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00253 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46948 * 90.00381 * 11 9 7 13 13 H 1.48500 * 109.46977 * 209.99854 * 11 9 7 14 14 H 1.48489 * 109.47175 * 330.00160 * 11 9 7 15 15 C 1.34779 * 119.99918 * 89.99966 * 5 4 2 16 16 O 1.21795 * 119.99817 * 180.02562 * 15 5 4 17 17 C 1.41276 * 119.99718 * 359.97438 * 15 5 4 18 18 C 1.35113 * 119.99436 * 179.97438 * 17 15 5 19 19 S 1.76202 * 119.99843 * 180.02562 * 18 17 15 20 20 C 1.81003 * 100.00119 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.46890 * 180.02562 * 20 19 18 22 22 C 1.34511 * 125.79278 * 90.00235 * 21 20 19 23 23 C 1.41386 * 106.84141 * 180.02562 * 22 21 20 24 24 C 1.34507 * 106.84010 * 0.02562 * 23 22 21 25 25 O 1.34304 * 108.42311 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47057 * 299.99896 * 1 2 3 27 27 H 1.08997 * 109.46865 * 60.00547 * 1 2 3 28 28 H 1.09004 * 109.46415 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47575 * 240.00179 * 2 1 3 30 30 H 1.09007 * 109.47018 * 300.00190 * 3 2 1 31 31 H 1.09005 * 109.46928 * 59.99676 * 3 2 1 32 32 H 1.09002 * 109.47654 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47199 * 55.00521 * 4 2 1 34 34 H 1.09000 * 109.47158 * 294.99975 * 4 2 1 35 35 H 1.09008 * 109.47075 * 29.99752 * 6 5 4 36 36 H 1.08997 * 109.47384 * 149.99824 * 6 5 4 37 37 H 0.97000 * 120.00027 * 179.97438 * 10 9 7 38 38 H 1.07995 * 120.00467 * 0.02562 * 17 15 5 39 39 H 1.07992 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.08994 * 109.46907 * 60.00162 * 20 19 18 41 41 H 1.09003 * 109.47081 * 299.99866 * 20 19 18 42 42 H 1.08000 * 126.57995 * 0.05173 * 22 21 20 43 43 H 1.08004 * 126.57483 * 179.97438 * 23 22 21 44 44 H 1.08004 * 125.79019 * 180.26381 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1260 -1.9918 0.5613 7 6 4.3422 -3.0658 1.5960 8 1 4.0437 -2.8969 2.6202 9 6 4.9211 -4.2641 1.2354 10 7 5.2850 -4.4696 -0.0116 11 14 5.1898 -5.5951 2.5182 12 1 3.9948 -6.4748 2.5765 13 1 6.3812 -6.4023 2.1519 14 1 5.4069 -4.9664 3.8458 15 6 4.2676 0.1493 1.7157 16 8 5.4814 0.0622 1.6665 17 6 3.6640 1.2735 2.3221 18 6 4.4334 2.2513 2.8489 19 16 3.6807 3.6532 3.6058 20 6 5.1582 4.5744 4.1005 21 6 4.7473 5.8500 4.7897 22 6 4.5345 5.9978 6.1096 23 6 4.1686 7.3477 6.3169 24 6 4.1793 7.9439 5.1113 25 8 4.5307 7.0321 4.1899 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6055 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1370 35 1 3.4758 -2.3721 -0.2267 36 1 5.0852 -1.7020 0.1325 37 1 5.6926 -5.3124 -0.2653 38 1 2.5877 1.3510 2.3653 39 1 5.5097 2.1737 2.8060 40 1 5.7504 4.8127 3.2171 41 1 5.7526 3.9679 4.7839 42 1 4.6259 5.2323 6.8659 43 1 3.9263 7.8109 7.2620 44 1 3.9492 8.9812 4.9176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754222642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = -23.832253 kcal Electronic energy + Delta-G solvation = -24245.665788 eV Core-core repulsion = 20676.864870 eV Total energy + Delta-G solvation = -3568.800918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.53866 -41.12375 -37.77563 -35.64860 -34.22390 -34.11453 -33.89819 -32.99106 -29.71331 -28.13035 -27.78265 -27.03690 -25.90049 -23.36344 -22.73237 -21.60734 -21.39056 -19.57666 -18.84509 -18.59321 -18.32995 -17.54956 -17.19119 -16.72380 -16.40254 -16.15087 -15.69441 -15.54122 -15.15656 -15.01246 -14.48360 -14.36794 -14.30953 -13.90966 -13.77860 -13.65455 -13.56989 -13.29515 -13.11771 -12.96402 -12.77929 -12.72231 -12.53252 -12.32332 -12.14674 -11.83911 -11.64232 -11.62770 -11.55676 -11.44593 -10.88509 -10.69905 -10.64185 -9.44630 -9.44481 -8.61916 -8.21216 -6.37152 -0.01306 0.04951 0.91593 1.22374 1.35918 1.38966 1.49627 1.75467 1.99406 2.31404 2.47581 2.54349 3.06898 3.51996 3.82825 3.89076 3.94285 4.02013 4.09194 4.15453 4.27234 4.30749 4.34013 4.51326 4.70817 4.80481 4.82687 4.86391 4.86993 4.93269 4.98185 5.07725 5.08741 5.12406 5.13528 5.24860 5.28624 5.43255 5.50654 5.54990 5.58968 5.86700 6.06632 6.12679 6.69812 6.78878 7.27550 7.46551 8.84892 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.002685 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.610196 B =10425.102830 C =11668.087950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.109 3.891 5 N -0.594 5.594 6 C 0.264 3.736 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.969 3.031 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.273 1.273 15 C 0.539 3.461 16 O -0.609 6.609 17 C -0.195 4.195 18 C -0.085 4.085 19 S -0.067 6.067 20 C -0.036 4.036 21 C -0.032 4.032 22 C -0.186 4.186 23 C -0.228 4.228 24 C -0.027 4.027 25 O -0.190 6.190 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.021 0.979 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.135 0.865 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 24.340 10.171 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.199 4.199 4 C -0.013 4.013 5 N -0.323 5.323 6 C 0.142 3.858 7 C -0.580 4.580 8 H 0.070 0.930 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.793 3.207 12 H -0.187 1.187 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.330 3.670 16 O -0.495 6.495 17 C -0.228 4.228 18 C -0.219 4.219 19 S 0.179 5.821 20 C -0.183 4.183 21 C -0.082 4.082 22 C -0.208 4.208 23 C -0.247 4.247 24 C -0.095 4.095 25 O -0.087 6.087 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.181 0.819 43 H 0.190 0.810 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.517 24.533 9.880 28.108 hybrid contribution 1.955 -1.538 0.072 2.489 sum -7.561 22.995 9.952 26.172 Atomic orbital electron populations 1.21709 0.92058 1.02360 1.03112 1.21513 0.97721 0.96565 0.97408 1.21967 0.99642 0.95470 1.02843 1.21883 0.78441 1.01804 0.99179 1.48099 1.07489 1.20445 1.56243 1.18692 0.92133 0.82325 0.92615 1.21687 1.40804 0.99872 0.95621 0.92960 1.25878 0.94734 1.00897 0.97704 1.70059 1.42225 1.25990 1.18548 0.85397 0.78247 0.78401 0.78663 1.18727 1.20556 1.19773 1.17388 0.86454 0.83957 0.79162 1.90754 1.16312 1.80950 1.61442 1.21677 1.01732 0.94782 1.04597 1.25790 1.03041 0.96738 0.96361 1.85945 1.11937 1.15586 1.68613 1.22067 0.98209 0.92616 1.05429 1.21371 1.08908 0.85897 0.92073 1.22002 1.04567 0.98880 0.95391 1.22226 1.07911 0.94249 1.00339 1.24924 1.01986 0.95963 0.86639 1.84024 1.67580 1.18230 1.38867 0.90853 0.91399 0.92555 0.93236 0.91452 0.90768 0.95255 0.90790 0.88622 0.96069 0.98570 0.92402 0.82591 0.84708 0.86722 0.84691 0.81946 0.80992 0.74356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.19 71.98 0.66 -2.07 16 2 C -0.11 -3.14 3.13 -10.79 -0.03 -3.18 16 3 C -0.14 -3.66 7.62 71.98 0.55 -3.11 16 4 C 0.11 3.65 4.94 86.38 0.43 4.08 16 5 N -0.59 -26.73 2.34 -837.10 -1.96 -28.69 16 6 C 0.26 14.84 5.16 85.63 0.44 15.28 16 7 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.01 0.40 5.46 84.66 0.46 0.86 16 10 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 11 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 15 C 0.54 24.06 6.25 84.99 0.53 24.59 16 16 O -0.61 -33.15 15.67 -4.65 -0.07 -33.22 16 17 C -0.20 -6.33 6.62 22.30 0.15 -6.19 16 18 C -0.08 -2.40 9.52 67.10 0.64 -1.76 16 19 S -0.07 -1.42 22.02 -56.49 -1.24 -2.66 16 20 C -0.04 -0.62 6.20 71.23 0.44 -0.18 16 21 C -0.03 -0.57 6.58 24.83 0.16 -0.41 16 22 C -0.19 -2.94 10.81 22.19 0.24 -2.70 16 23 C -0.23 -2.91 10.91 22.19 0.24 -2.67 16 24 C -0.03 -0.33 12.09 66.97 0.81 0.48 16 25 O -0.19 -3.49 10.65 -2.51 -0.03 -3.52 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.07 1.60 6.59 -2.38 -0.02 1.58 16 32 H 0.03 0.93 5.85 -2.39 -0.01 0.91 16 33 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 34 H 0.10 2.62 6.08 -2.39 -0.01 2.61 16 35 H 0.02 1.21 8.07 -2.38 -0.02 1.19 16 36 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.16 4.15 4.32 -2.91 -0.01 4.14 16 39 H 0.14 4.11 7.41 -2.91 -0.02 4.09 16 40 H 0.11 1.84 8.14 -2.40 -0.02 1.82 16 41 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.24 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -78.29 379.82 5.95 -72.33 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.99 Total: 13.87 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.96 Total: -8.91 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.68 Total: -85.74 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.10 Total: -36.73 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -1.24 Total: -2.66 kcal Total: -78.29 5.95 -72.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754222642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.502 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds