Wall clock time and date at job start Tue Mar 31 2020 14:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.53002 * 109.47075 * 178.30839 * 3 2 1 5 5 C 1.52999 * 109.47246 * 211.76460 * 4 3 2 6 6 C 1.53001 * 109.47425 * 298.30709 * 3 2 1 7 7 N 1.46498 * 109.47430 * 179.68086 * 6 3 2 8 8 C 1.46498 * 120.00192 * 81.63473 * 7 6 3 9 9 C 1.50697 * 109.46978 * 89.99920 * 8 7 6 10 10 H 1.08007 * 120.00223 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00192 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00190 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99610 * 0.02562 * 11 9 8 14 14 H 1.48491 * 109.47201 * 90.00144 * 13 11 9 15 15 H 1.48499 * 109.46702 * 209.99808 * 13 11 9 16 16 H 1.48495 * 109.47079 * 329.99593 * 13 11 9 17 17 C 1.34779 * 119.99742 * 261.63754 * 7 6 3 18 18 O 1.21614 * 119.99787 * 184.86594 * 17 7 6 19 19 C 1.47377 * 120.00034 * 4.86136 * 17 7 6 20 20 C 1.36775 * 122.89425 * 25.19938 * 19 17 7 21 21 S 1.70552 * 110.75463 * 179.97438 * 20 19 17 22 22 C 1.75682 * 91.92085 * 359.97438 * 21 20 19 23 23 C 1.41443 * 125.13757 * 180.02562 * 22 21 20 24 24 O 1.21421 * 120.00322 * 179.97438 * 23 22 21 25 25 C 1.36410 * 109.73013 * 359.77264 * 22 21 20 26 26 H 1.08997 * 109.46594 * 63.20024 * 1 2 3 27 27 H 1.09002 * 109.46742 * 183.20058 * 1 2 3 28 28 H 1.08996 * 109.47298 * 303.20390 * 1 2 3 29 29 H 1.09002 * 109.47352 * 239.99420 * 2 1 3 30 30 H 1.09002 * 109.46963 * 119.99787 * 2 1 3 31 31 H 1.09004 * 109.47500 * 58.31334 * 3 2 1 32 32 H 1.09004 * 109.47388 * 331.76597 * 4 3 2 33 33 H 1.09009 * 109.47328 * 91.76415 * 4 3 2 34 34 H 1.09003 * 109.47218 * 65.80671 * 5 4 3 35 35 H 1.08997 * 109.47203 * 185.80074 * 5 4 3 36 36 H 1.09001 * 109.47222 * 305.80399 * 5 4 3 37 37 H 1.09002 * 109.46733 * 59.67227 * 6 3 2 38 38 H 1.09002 * 109.46732 * 299.68480 * 6 3 2 39 39 H 1.08997 * 109.46962 * 330.00411 * 8 7 6 40 40 H 1.08999 * 109.47181 * 209.99858 * 8 7 6 41 41 H 0.97000 * 120.00164 * 180.02562 * 12 11 9 42 42 H 1.07997 * 124.62208 * 359.96105 * 20 19 17 43 43 H 1.08003 * 119.99710 * 359.97438 * 23 22 21 44 44 H 1.08006 * 123.30804 * 180.23647 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5694 1.4427 0.0426 5 6 4.0583 2.6766 0.8037 6 6 1.5651 2.1514 -1.2700 7 7 2.0470 3.5348 -1.2664 8 6 3.4154 3.8350 -1.6950 9 6 3.4303 4.0997 -3.1785 10 1 2.5123 4.0497 -3.7453 11 6 4.6158 4.4066 -3.8121 12 7 4.6290 4.6371 -5.1068 13 14 6.2035 4.4938 -2.8317 14 1 6.8477 3.1560 -2.8130 15 1 7.1212 5.4763 -3.4622 16 1 5.9036 4.9183 -1.4407 17 6 1.2315 4.5314 -0.8686 18 8 1.6002 5.6875 -0.9489 19 6 -0.1071 4.2202 -0.3363 20 6 -0.4146 3.0213 0.2459 21 16 -2.0435 2.9948 0.7507 22 6 -2.3128 4.6297 0.1665 23 6 -3.5368 5.3333 0.2517 24 8 -3.6188 6.4639 -0.1834 25 6 -1.1616 5.1201 -0.3766 26 1 -0.3632 0.4633 -0.9173 27 1 -0.3633 -1.0261 0.0574 28 1 -0.3633 0.5627 0.8598 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6522 1.9650 0.8745 32 1 3.9190 0.5422 0.5476 33 1 3.9613 1.4643 -0.9744 34 1 3.7532 2.6041 1.8477 35 1 5.1453 2.7320 0.7460 36 1 3.6247 3.5727 0.3599 37 1 0.4756 2.1461 -1.3032 38 1 1.9577 1.6321 -2.1443 39 1 4.0608 2.9858 -1.4710 40 1 3.7771 4.7162 -1.1651 41 1 5.4630 4.8527 -5.5526 42 1 0.2793 2.2030 0.3689 43 1 -4.3986 4.8649 0.7039 44 1 -1.0803 6.1106 -0.7994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754999855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:01 Heat of formation + Delta-G solvation = -10.989737 kcal Electronic energy + Delta-G solvation = -26393.756016 eV Core-core repulsion = 22825.511991 eV Total energy + Delta-G solvation = -3568.244024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.46893 -39.26247 -37.57444 -36.66697 -34.24649 -32.59829 -32.29407 -30.55512 -28.85653 -27.19436 -26.15192 -24.79563 -23.92766 -21.99191 -21.87308 -20.81848 -19.62356 -18.65867 -17.78098 -17.10319 -16.77727 -16.08186 -15.40017 -15.20311 -14.95612 -14.59921 -14.45607 -14.14624 -13.95054 -13.78261 -13.67633 -13.22073 -12.82208 -12.72477 -12.64282 -12.53025 -12.41244 -12.02208 -11.70608 -11.54638 -11.41039 -11.31380 -11.07467 -11.02139 -10.68060 -10.56876 -10.44140 -10.19139 -10.11950 -9.95188 -9.49251 -9.22357 -8.97374 -8.70479 -8.59694 -7.77378 -6.09920 -4.08296 0.07589 1.27617 1.60192 1.67497 2.71595 3.23245 3.32484 3.35651 3.54160 3.80121 4.22439 4.37240 4.62054 4.63036 4.79125 4.91125 5.00563 5.11672 5.18112 5.20042 5.24614 5.33183 5.36140 5.50069 5.55620 5.65933 5.68173 5.79098 5.84387 5.93798 5.96107 6.01427 6.13265 6.14634 6.21020 6.27798 6.37581 6.62165 6.75318 6.90189 7.25119 7.25256 7.60187 8.11791 8.44357 8.83326 8.95067 9.49823 11.03616 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.004895 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.358768 B = 5719.206299 C = 7155.562831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.169 4.169 6 C 0.097 3.903 7 N -0.577 5.577 8 C 0.208 3.792 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.896 5.896 13 Si 0.868 3.132 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.262 1.262 17 C 0.563 3.437 18 O -0.527 6.527 19 C -0.156 4.156 20 C -0.222 4.222 21 S 0.230 5.770 22 C -0.341 4.341 23 C 0.409 3.591 24 O -0.458 6.458 25 C 0.010 3.990 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.264 0.736 42 H 0.211 0.789 43 H 0.101 0.899 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 -12.222 15.143 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.157 4.157 5 C -0.226 4.226 6 C -0.028 4.028 7 N -0.307 5.307 8 C 0.088 3.912 9 C -0.568 4.568 10 H 0.092 0.908 11 C -0.128 4.128 12 N -0.535 5.535 13 Si 0.695 3.305 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.187 1.187 17 C 0.348 3.652 18 O -0.404 6.404 19 C -0.172 4.172 20 C -0.360 4.360 21 S 0.498 5.502 22 C -0.458 4.458 23 C 0.268 3.732 24 O -0.334 6.334 25 C -0.023 4.023 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.227 0.773 43 H 0.117 0.883 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.615 -12.036 15.420 23.276 hybrid contribution 1.970 0.911 -0.399 2.207 sum -10.645 -11.125 15.020 21.510 Atomic orbital electron populations 1.22091 0.96446 1.02265 1.01715 1.21633 0.95345 0.95926 1.02893 1.21970 0.97431 0.95927 0.98828 1.21711 0.93761 0.98115 1.02082 1.22217 1.01186 0.99809 0.99412 1.22093 0.99615 0.83216 0.97837 1.47732 1.14799 1.05218 1.62954 1.20066 0.77663 0.97106 0.96319 1.21365 0.96145 1.48132 0.91157 0.90760 1.24829 0.98735 0.94549 0.94729 1.69890 1.27217 1.47622 1.08724 0.86959 0.83969 0.78372 0.81221 1.19995 1.20898 1.18699 1.17563 0.83324 0.85570 0.78738 1.90800 1.74949 1.19387 1.55292 1.19480 0.97301 0.94232 1.06194 1.27895 1.02572 1.03301 1.02271 1.82699 1.03408 1.09950 1.54170 1.24387 1.02100 1.01792 1.17531 1.21670 0.88925 0.86527 0.76042 1.90619 1.85879 1.19212 1.37668 1.20979 0.89149 1.00150 0.91983 0.91914 0.92023 0.93082 0.90918 0.91467 0.90611 0.92263 0.90195 0.93642 0.92951 0.90400 0.89948 0.89346 0.93725 0.94165 0.92566 0.77307 0.88288 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.46 37.16 0.31 -0.95 16 2 C -0.12 -1.05 5.27 -26.73 -0.14 -1.19 16 3 C -0.12 -1.43 1.68 -90.62 -0.15 -1.59 16 4 C -0.12 -1.57 5.06 -26.73 -0.14 -1.71 16 5 C -0.17 -2.49 8.56 37.16 0.32 -2.17 16 6 C 0.10 1.43 4.05 -4.04 -0.02 1.42 16 7 N -0.58 -11.36 1.67 -176.35 -0.30 -11.65 16 8 C 0.21 4.83 1.93 -5.20 -0.01 4.82 16 9 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 10 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 13 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 17 C 0.56 11.64 7.53 -12.54 -0.09 11.54 16 18 O -0.53 -13.24 16.49 5.27 0.09 -13.16 16 19 C -0.16 -2.49 5.39 -106.54 -0.57 -3.06 16 20 C -0.22 -2.64 7.23 30.20 0.22 -2.42 16 21 S 0.23 2.01 22.91 -107.50 -2.46 -0.45 16 22 C -0.34 -4.06 6.22 -39.02 -0.24 -4.30 16 23 C 0.41 4.47 11.46 31.95 0.37 4.84 16 24 O -0.46 -6.99 17.51 5.43 0.10 -6.89 16 25 C 0.01 0.15 9.54 -40.07 -0.38 -0.23 16 26 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.35 6.55 -51.93 -0.34 0.01 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.08 0.87 5.90 -51.93 -0.31 0.57 16 32 H 0.06 0.65 7.77 -51.93 -0.40 0.25 16 33 H 0.08 1.22 5.84 -51.92 -0.30 0.91 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.38 4.30 -51.93 -0.22 1.16 16 37 H 0.08 1.09 3.51 -51.93 -0.18 0.91 16 38 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.05 0.95 3.46 -51.93 -0.18 0.77 16 40 H 0.04 1.03 6.02 -51.93 -0.31 0.72 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.21 2.25 0.65 -52.49 -0.03 2.21 16 43 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.16 2.74 8.00 -52.48 -0.42 2.32 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -34.81 350.27 -7.75 -42.56 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.59 Total: 2.81 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.97 Total: -8.22 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.48 Total: -38.36 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.18 Total: -20.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.46 Total: -0.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.81 -7.75 -42.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754999855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.571 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds