Wall clock time and date at job start Tue Mar 31 2020 14:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.53002 * 109.47075 * 178.30839 * 3 2 1 5 5 C 1.52999 * 109.47246 * 211.76460 * 4 3 2 6 6 C 1.53001 * 109.47425 * 298.30709 * 3 2 1 7 7 N 1.46498 * 109.47430 * 179.68086 * 6 3 2 8 8 C 1.46498 * 120.00192 * 81.63473 * 7 6 3 9 9 C 1.50697 * 109.46978 * 89.99920 * 8 7 6 10 10 H 1.08007 * 120.00223 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00192 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00190 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99610 * 0.02562 * 11 9 8 14 14 H 1.48491 * 109.47201 * 90.00144 * 13 11 9 15 15 H 1.48499 * 109.46702 * 209.99808 * 13 11 9 16 16 H 1.48495 * 109.47079 * 329.99593 * 13 11 9 17 17 C 1.34779 * 119.99742 * 261.63754 * 7 6 3 18 18 O 1.21614 * 119.99787 * 184.86594 * 17 7 6 19 19 C 1.47377 * 120.00034 * 4.86136 * 17 7 6 20 20 C 1.36775 * 122.89425 * 25.19938 * 19 17 7 21 21 S 1.70552 * 110.75463 * 179.97438 * 20 19 17 22 22 C 1.75682 * 91.92085 * 359.97438 * 21 20 19 23 23 C 1.41443 * 125.13757 * 180.02562 * 22 21 20 24 24 O 1.21421 * 120.00322 * 179.97438 * 23 22 21 25 25 C 1.36410 * 109.73013 * 359.77264 * 22 21 20 26 26 H 1.08997 * 109.46594 * 63.20024 * 1 2 3 27 27 H 1.09002 * 109.46742 * 183.20058 * 1 2 3 28 28 H 1.08996 * 109.47298 * 303.20390 * 1 2 3 29 29 H 1.09002 * 109.47352 * 239.99420 * 2 1 3 30 30 H 1.09002 * 109.46963 * 119.99787 * 2 1 3 31 31 H 1.09004 * 109.47500 * 58.31334 * 3 2 1 32 32 H 1.09004 * 109.47388 * 331.76597 * 4 3 2 33 33 H 1.09009 * 109.47328 * 91.76415 * 4 3 2 34 34 H 1.09003 * 109.47218 * 65.80671 * 5 4 3 35 35 H 1.08997 * 109.47203 * 185.80074 * 5 4 3 36 36 H 1.09001 * 109.47222 * 305.80399 * 5 4 3 37 37 H 1.09002 * 109.46733 * 59.67227 * 6 3 2 38 38 H 1.09002 * 109.46732 * 299.68480 * 6 3 2 39 39 H 1.08997 * 109.46962 * 330.00411 * 8 7 6 40 40 H 1.08999 * 109.47181 * 209.99858 * 8 7 6 41 41 H 0.97000 * 120.00164 * 180.02562 * 12 11 9 42 42 H 1.07997 * 124.62208 * 359.96105 * 20 19 17 43 43 H 1.08003 * 119.99710 * 359.97438 * 23 22 21 44 44 H 1.08006 * 123.30804 * 180.23647 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5694 1.4427 0.0426 5 6 4.0583 2.6766 0.8037 6 6 1.5651 2.1514 -1.2700 7 7 2.0470 3.5348 -1.2664 8 6 3.4154 3.8350 -1.6950 9 6 3.4303 4.0997 -3.1785 10 1 2.5123 4.0497 -3.7453 11 6 4.6158 4.4066 -3.8121 12 7 4.6290 4.6371 -5.1068 13 14 6.2035 4.4938 -2.8317 14 1 6.8477 3.1560 -2.8130 15 1 7.1212 5.4763 -3.4622 16 1 5.9036 4.9183 -1.4407 17 6 1.2315 4.5314 -0.8686 18 8 1.6002 5.6875 -0.9489 19 6 -0.1071 4.2202 -0.3363 20 6 -0.4146 3.0213 0.2459 21 16 -2.0435 2.9948 0.7507 22 6 -2.3128 4.6297 0.1665 23 6 -3.5368 5.3333 0.2517 24 8 -3.6188 6.4639 -0.1834 25 6 -1.1616 5.1201 -0.3766 26 1 -0.3632 0.4633 -0.9173 27 1 -0.3633 -1.0261 0.0574 28 1 -0.3633 0.5627 0.8598 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6522 1.9650 0.8745 32 1 3.9190 0.5422 0.5476 33 1 3.9613 1.4643 -0.9744 34 1 3.7532 2.6041 1.8477 35 1 5.1453 2.7320 0.7460 36 1 3.6247 3.5727 0.3599 37 1 0.4756 2.1461 -1.3032 38 1 1.9577 1.6321 -2.1443 39 1 4.0608 2.9858 -1.4710 40 1 3.7771 4.7162 -1.1651 41 1 5.4630 4.8527 -5.5526 42 1 0.2793 2.2030 0.3689 43 1 -4.3986 4.8649 0.7039 44 1 -1.0803 6.1106 -0.7994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754999855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:01 Heat of formation + Delta-G solvation = -34.381628 kcal Electronic energy + Delta-G solvation = -26394.770364 eV Core-core repulsion = 22825.511991 eV Total energy + Delta-G solvation = -3569.258373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80066 -40.29402 -38.82076 -37.92707 -35.77948 -34.53934 -33.44122 -31.69956 -30.36138 -28.60223 -27.18724 -25.97297 -25.39472 -23.44636 -22.90943 -21.84189 -20.79146 -19.80079 -19.23255 -18.89670 -18.06473 -17.35390 -16.69438 -16.61228 -16.17574 -15.98898 -15.61429 -15.32592 -15.21953 -15.05226 -14.78855 -14.61639 -14.19978 -13.89404 -13.82578 -13.71614 -13.60334 -13.44381 -13.11329 -12.94448 -12.73439 -12.44713 -12.39162 -12.28427 -12.10779 -11.80615 -11.75838 -11.39694 -11.32948 -11.24828 -11.09853 -10.84622 -10.78679 -9.99279 -9.68775 -9.37311 -8.36451 -6.40760 -0.91669 0.38427 0.48203 0.62213 1.26239 1.32113 1.42294 1.71350 2.07527 2.27681 2.36657 2.97486 3.38537 3.56291 3.67191 3.82312 3.94539 4.01760 4.09174 4.22879 4.35035 4.39483 4.43336 4.51348 4.58159 4.65035 4.70097 4.75166 4.86536 4.88187 4.88568 5.01814 5.05632 5.11643 5.18381 5.29277 5.32965 5.38184 5.46288 5.47439 5.51515 5.65347 6.21343 6.41826 6.56897 6.60586 7.16270 7.30427 8.81089 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.004895 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.358768 B = 5719.206299 C = 7155.562831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.120 4.120 5 C -0.172 4.172 6 C 0.090 3.910 7 N -0.580 5.580 8 C 0.225 3.775 9 C -0.539 4.539 10 H 0.023 0.977 11 C 0.013 3.987 12 N -0.946 5.946 13 Si 0.939 3.061 14 H -0.244 1.244 15 H -0.283 1.283 16 H -0.255 1.255 17 C 0.552 3.448 18 O -0.595 6.595 19 C -0.187 4.187 20 C -0.227 4.227 21 S 0.396 5.604 22 C -0.353 4.353 23 C 0.414 3.586 24 O -0.509 6.509 25 C -0.029 4.029 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.040 0.960 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.014 0.986 41 H 0.268 0.732 42 H 0.223 0.777 43 H 0.167 0.833 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 -16.533 19.016 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.152 4.152 3 C -0.133 4.133 4 C -0.157 4.157 5 C -0.229 4.229 6 C -0.032 4.032 7 N -0.308 5.308 8 C 0.104 3.896 9 C -0.578 4.578 10 H 0.041 0.959 11 C -0.185 4.185 12 N -0.586 5.586 13 Si 0.761 3.239 14 H -0.167 1.167 15 H -0.208 1.208 16 H -0.179 1.179 17 C 0.340 3.660 18 O -0.477 6.477 19 C -0.203 4.203 20 C -0.366 4.366 21 S 0.666 5.334 22 C -0.471 4.471 23 C 0.276 3.724 24 O -0.387 6.387 25 C -0.062 4.062 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.239 0.761 43 H 0.183 0.817 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.328 -16.425 19.310 29.120 hybrid contribution 2.293 2.154 -1.590 3.526 sum -12.035 -14.271 17.720 25.739 Atomic orbital electron populations 1.22155 0.95298 1.03822 1.01792 1.21627 0.96433 0.93190 1.03993 1.21925 0.96646 0.97895 0.96855 1.21721 0.94683 0.98732 1.00611 1.22217 1.00956 0.98943 1.00831 1.22437 1.00757 0.80573 0.99476 1.47760 1.13522 1.07334 1.62181 1.19696 0.80568 0.96952 0.92388 1.21657 0.94357 1.48072 0.93684 0.95905 1.25822 1.03005 0.93890 0.95800 1.70056 1.28537 1.49163 1.10835 0.85837 0.78653 0.79836 0.79563 1.16729 1.20811 1.17854 1.18397 0.85022 0.84719 0.77847 1.90733 1.76686 1.22012 1.58287 1.18952 0.94883 0.96671 1.09827 1.28095 1.05897 1.01740 1.00850 1.82099 0.98156 1.04627 1.48562 1.24854 1.01358 1.04594 1.16244 1.22647 0.89764 0.85516 0.74454 1.90620 1.86510 1.21738 1.39839 1.20713 0.91134 0.99268 0.95062 0.92715 0.90008 0.91865 0.91102 0.89134 0.89627 0.88921 0.92803 0.91298 0.93115 0.94054 0.88083 0.90811 0.90979 0.96840 0.92303 0.76087 0.81726 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 8.46 71.98 0.61 -1.11 16 2 C -0.11 -1.51 5.27 30.59 0.16 -1.35 16 3 C -0.11 -2.40 1.68 -10.79 -0.02 -2.42 16 4 C -0.12 -2.91 5.06 30.59 0.15 -2.76 16 5 C -0.17 -4.86 8.56 71.98 0.62 -4.25 16 6 C 0.09 2.68 4.05 86.38 0.35 3.03 16 7 N -0.58 -24.23 1.67 -830.10 -1.39 -25.62 16 8 C 0.23 11.10 1.93 85.63 0.16 11.26 16 9 C -0.54 -32.69 9.94 25.60 0.25 -32.44 16 10 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 11 C 0.01 0.77 5.47 84.66 0.46 1.23 16 12 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 13 Si 0.94 44.95 27.47 68.60 1.88 46.84 16 14 H -0.24 -10.43 7.11 99.48 0.71 -9.73 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 16 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 17 C 0.55 24.77 7.53 86.65 0.65 25.42 16 18 O -0.59 -33.27 16.49 -4.07 -0.07 -33.34 16 19 C -0.19 -6.20 5.39 -21.11 -0.11 -6.32 16 20 C -0.23 -4.83 7.23 67.48 0.49 -4.34 16 21 S 0.40 4.85 22.91 -56.49 -1.29 3.55 16 22 C -0.35 -7.72 6.22 22.63 0.14 -7.57 16 23 C 0.41 8.02 11.46 68.61 0.79 8.81 16 24 O -0.51 -15.61 17.51 -3.47 -0.06 -15.67 16 25 C -0.03 -0.95 9.54 21.95 0.21 -0.74 16 26 H 0.05 0.64 6.53 -2.39 -0.02 0.63 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.46 6.55 -2.39 -0.02 0.45 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.09 1.68 5.90 -2.38 -0.01 1.67 16 32 H 0.09 1.65 7.77 -2.38 -0.02 1.64 16 33 H 0.05 1.59 5.84 -2.38 -0.01 1.57 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.48 4.30 -2.39 -0.01 1.47 16 37 H 0.10 2.59 3.51 -2.39 -0.01 2.58 16 38 H 0.07 2.40 8.10 -2.39 -0.02 2.38 16 39 H 0.07 3.16 3.46 -2.39 -0.01 3.15 16 40 H 0.01 0.74 6.02 -2.39 -0.01 0.73 16 41 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 42 H 0.22 4.02 0.65 -2.91 0.00 4.02 16 43 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.12 4.77 8.00 -2.91 -0.02 4.75 16 Total: -1.00 -89.26 350.27 5.28 -83.98 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.99 Total: 14.71 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.92 Total: -13.54 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -1.09 Total: -86.53 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.13 Total: -49.01 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.29 Total: 3.55 kcal Total: -89.26 5.28 -83.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754999855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.600 kcal (2) G-P(sol) polarization free energy of solvation -89.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds