Wall clock time and date at job start Tue Mar 31 2020 13:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29399 * 124.70635 * 2 1 4 4 C 1.30910 * 117.46559 * 179.97438 * 3 2 1 5 5 C 1.50706 * 123.03234 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46850 * 269.98170 * 5 4 3 7 7 C 1.52992 * 109.47250 * 64.99992 * 6 5 4 8 8 C 1.53004 * 109.46601 * 184.99861 * 6 5 4 9 9 C 1.36753 * 113.93876 * 0.02562 * 4 3 2 10 10 C 1.46505 * 126.18204 * 179.97438 * 9 4 3 11 11 O 1.21604 * 119.99873 * 0.36693 * 10 9 4 12 12 O 1.34874 * 119.99834 * 180.08965 * 10 9 4 13 13 C 1.45204 * 117.00051 * 175.11627 * 12 10 9 14 14 C 1.52993 * 109.47266 * 182.77263 * 13 12 10 15 15 C 1.50701 * 115.55392 * 65.31891 * 14 13 12 16 16 H 1.08004 * 119.99902 * 266.52913 * 15 14 13 17 17 C 1.37875 * 120.00187 * 86.52121 * 15 14 13 18 18 N 1.31512 * 119.99973 * 353.32348 * 17 15 14 19 19 Si 1.86802 * 119.99922 * 173.31569 * 17 15 14 20 20 H 1.48490 * 109.47187 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46730 * 120.00394 * 19 17 15 22 22 H 1.48500 * 109.46992 * 240.00220 * 19 17 15 23 23 C 1.53001 * 117.50003 * 279.64932 * 14 13 12 24 24 C 1.53000 * 117.49801 * 210.98970 * 14 13 12 25 25 S 1.70926 * 124.71060 * 180.32295 * 2 1 3 26 26 H 1.08999 * 109.47335 * 89.99691 * 1 2 3 27 27 H 1.09007 * 109.46810 * 209.99312 * 1 2 3 28 28 H 1.08992 * 109.47049 * 329.99116 * 1 2 3 29 29 H 1.09005 * 109.46675 * 29.97774 * 5 4 3 30 30 H 1.08991 * 109.47217 * 149.98008 * 5 4 3 31 31 H 1.09000 * 109.47116 * 304.99728 * 6 5 4 32 32 H 1.09006 * 109.46911 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47273 * 299.99731 * 7 6 5 34 34 H 1.08996 * 109.47592 * 60.00192 * 7 6 5 35 35 H 1.09000 * 109.47435 * 60.00020 * 8 6 5 36 36 H 1.09006 * 109.46701 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47277 * 299.99768 * 8 6 5 38 38 H 1.09001 * 109.46808 * 302.77240 * 13 12 10 39 39 H 1.08997 * 109.47053 * 62.77007 * 13 12 10 40 40 H 0.97004 * 120.00245 * 185.04714 * 18 17 15 41 41 H 1.09001 * 117.49560 * 359.97438 * 23 14 13 42 42 H 1.08997 * 117.50509 * 145.02185 * 23 14 13 43 43 H 1.09004 * 117.49862 * 214.98111 * 24 14 13 44 44 H 1.09000 * 117.50219 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0638 0.0000 4 6 3.5424 0.8988 0.0005 5 6 4.5166 2.0486 0.0011 6 6 4.8472 2.4377 -1.4412 7 6 3.5886 2.9739 -2.1261 8 6 5.9288 3.5198 -1.4422 9 6 3.9353 -0.4111 0.0004 10 6 5.3165 -0.8998 0.0004 11 8 6.2409 -0.1097 0.0072 12 8 5.5626 -2.2258 -0.0015 13 6 6.9504 -2.6386 -0.1116 14 6 7.0255 -4.1657 -0.1664 15 6 6.4059 -4.8038 -1.3830 16 1 5.3799 -5.1398 -1.3532 17 6 7.1488 -4.9584 -2.5342 18 7 8.3517 -4.4333 -2.6160 19 14 6.4465 -5.9138 -3.9776 20 1 5.0854 -6.3986 -3.6351 21 1 6.3714 -5.0285 -5.1676 22 1 7.3245 -7.0732 -4.2778 23 6 6.9264 -4.9259 1.1577 24 6 8.2679 -4.8336 0.4262 25 16 2.4803 -1.4051 -0.0079 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8898 0.5139 29 1 4.0720 2.9012 0.5146 30 1 5.4301 1.7506 0.5156 31 1 5.2089 1.5619 -1.9799 32 1 3.8241 3.2506 -3.1538 33 1 2.8180 2.2029 -2.1253 34 1 3.2269 3.8497 -1.5874 35 1 6.8255 3.1378 -0.9543 36 1 6.1647 3.7967 -2.4698 37 1 5.5671 4.3956 -0.9035 38 1 7.3827 -2.2207 -1.0207 39 1 7.5063 -2.2783 0.7540 40 1 8.8451 -4.4785 -3.4500 41 1 6.8081 -4.3380 2.0679 42 1 6.4135 -5.8876 1.1488 43 1 8.6369 -5.7347 -0.0637 44 1 9.0320 -4.1851 0.8548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756296877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:51 Heat of formation + Delta-G solvation = -37.281372 kcal Electronic energy + Delta-G solvation = -25347.971796 eV Core-core repulsion = 21778.587680 eV Total energy + Delta-G solvation = -3569.384115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43776 -39.28663 -36.81987 -36.07239 -35.19817 -32.43804 -31.98645 -29.21446 -28.07336 -27.06803 -26.55594 -25.25234 -23.19424 -22.13933 -21.15571 -20.14098 -19.34973 -19.03298 -18.08885 -16.54824 -16.52965 -15.91679 -15.56196 -15.06434 -14.86089 -14.60778 -14.50814 -13.92765 -13.89344 -13.54711 -13.19694 -12.86384 -12.64318 -12.61929 -12.22124 -12.17731 -12.14335 -11.78299 -11.65050 -11.46428 -11.01611 -10.90251 -10.86282 -10.84907 -10.55915 -10.54391 -10.31967 -10.08015 -9.92374 -9.75985 -9.55938 -9.45053 -8.86700 -8.68302 -8.50818 -8.25227 -6.09223 -4.15354 0.20329 1.21229 1.67745 2.40226 3.12860 3.24475 3.27555 3.33794 3.37719 3.90537 4.36157 4.71771 4.88009 4.99102 5.04466 5.12946 5.18934 5.19922 5.22710 5.28815 5.49529 5.60347 5.67901 5.76600 5.78813 5.84880 5.93329 5.93883 5.98937 6.14326 6.20500 6.27236 6.33670 6.38774 6.46211 6.47827 6.60216 6.69922 7.00094 7.13609 7.31973 7.43013 7.60883 7.84002 8.25385 8.36699 8.86464 9.50508 10.99318 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004016 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.001225 B = 6969.750812 C = 7482.303399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.037 3.963 3 N -0.476 5.476 4 C 0.157 3.843 5 C -0.052 4.052 6 C -0.085 4.085 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.283 4.283 10 C 0.536 3.464 11 O -0.502 6.502 12 O -0.333 6.333 13 C 0.119 3.881 14 C 0.035 3.965 15 C -0.489 4.489 16 H 0.064 0.936 17 C 0.070 3.930 18 N -0.881 5.881 19 Si 0.890 3.110 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.205 4.205 24 C -0.142 4.142 25 S 0.224 5.776 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 11.080 4.862 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.237 4.237 3 N -0.192 5.192 4 C 0.017 3.983 5 C -0.091 4.091 6 C -0.104 4.104 7 C -0.201 4.201 8 C -0.200 4.200 9 C -0.406 4.406 10 C 0.379 3.621 11 O -0.394 6.394 12 O -0.249 6.249 13 C 0.046 3.954 14 C 0.035 3.965 15 C -0.527 4.527 16 H 0.082 0.918 17 C -0.133 4.133 18 N -0.518 5.518 19 Si 0.718 3.282 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.242 4.242 24 C -0.180 4.180 25 S 0.483 5.517 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.487 10.570 4.763 17.040 hybrid contribution 0.499 0.197 -0.910 1.057 sum -11.988 10.767 3.853 16.568 Atomic orbital electron populations 1.20489 0.84897 1.04381 1.04117 1.27503 1.02300 0.92502 1.01390 1.66075 1.04114 1.31354 1.17610 1.20874 0.89879 0.92796 0.94750 1.20580 0.96822 0.93299 0.98427 1.20975 0.95824 0.98992 0.94634 1.21847 0.97426 1.01096 0.99692 1.21780 0.98559 0.97974 1.01655 1.24904 0.96688 0.96823 1.22140 1.19341 0.86743 0.82447 0.73543 1.90792 1.44859 1.56941 1.46784 1.86617 1.34519 1.21724 1.82015 1.22968 0.75399 0.96832 1.00245 1.18789 0.98607 0.87078 0.92028 1.20415 0.97984 1.39000 0.95309 0.91809 1.25012 0.94558 0.95238 0.98530 1.69976 1.11525 1.44195 1.26118 0.86556 0.79326 0.80017 0.82317 1.19537 1.21006 1.20850 1.23018 1.02490 1.02467 0.96266 1.22533 0.90011 1.02653 1.02778 1.84323 0.94829 1.08868 1.63640 0.89291 0.89809 0.89154 0.90294 0.87786 0.90934 0.93170 0.92659 0.92706 0.92117 0.92699 0.92872 0.90461 0.94044 0.92882 0.91544 0.90029 0.89351 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.46 36.00 0.38 -0.21 16 2 C 0.04 0.44 7.37 -13.30 -0.10 0.34 16 3 N -0.48 -6.62 9.64 -7.47 -0.07 -6.70 16 4 C 0.16 2.40 5.36 -83.52 -0.45 1.95 16 5 C -0.05 -0.73 4.53 -27.88 -0.13 -0.85 16 6 C -0.09 -1.15 2.91 -90.62 -0.26 -1.41 16 7 C -0.14 -1.74 8.98 37.15 0.33 -1.40 16 8 C -0.14 -1.66 9.19 37.16 0.34 -1.31 16 9 C -0.28 -4.81 6.52 -36.79 -0.24 -5.05 16 10 C 0.54 10.78 7.92 34.06 0.27 11.05 16 11 O -0.50 -10.52 14.13 -19.34 -0.27 -10.79 16 12 O -0.33 -7.39 10.06 -40.97 -0.41 -7.80 16 13 C 0.12 2.79 5.30 37.15 0.20 2.99 16 14 C 0.04 0.87 1.63 -155.66 -0.25 0.62 16 15 C -0.49 -13.19 8.78 -34.44 -0.30 -13.49 16 16 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 17 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 18 N -0.88 -24.62 12.87 55.43 0.71 -23.91 16 19 Si 0.89 20.89 29.55 -169.99 -5.02 15.87 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 24 C -0.14 -3.27 9.36 -26.69 -0.25 -3.52 16 25 S 0.22 3.11 23.04 -107.50 -2.48 0.63 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.61 6.05 -51.93 -0.31 1.29 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.73 6.75 -51.93 -0.35 0.38 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -29.66 383.38 -9.56 -39.22 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.97 Total: 0.90 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.82 Total: -13.20 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.64 Total: -30.60 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.69 Total: -18.60 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.48 Total: 0.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.66 -9.56 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756296877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.940 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds