Wall clock time and date at job start Tue Mar 31 2020 13:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29399 * 124.70635 * 2 1 4 4 C 1.30910 * 117.46559 * 179.97438 * 3 2 1 5 5 C 1.50706 * 123.03234 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46850 * 269.98170 * 5 4 3 7 7 C 1.52992 * 109.47250 * 64.99992 * 6 5 4 8 8 C 1.53004 * 109.46601 * 184.99861 * 6 5 4 9 9 C 1.36753 * 113.93876 * 0.02562 * 4 3 2 10 10 C 1.46505 * 126.18204 * 179.97438 * 9 4 3 11 11 O 1.21604 * 119.99873 * 0.36693 * 10 9 4 12 12 O 1.34874 * 119.99834 * 180.08965 * 10 9 4 13 13 C 1.45204 * 117.00051 * 175.11627 * 12 10 9 14 14 C 1.52993 * 109.47266 * 182.77263 * 13 12 10 15 15 C 1.50701 * 115.55392 * 65.31891 * 14 13 12 16 16 H 1.08004 * 119.99902 * 266.52913 * 15 14 13 17 17 C 1.37875 * 120.00187 * 86.52121 * 15 14 13 18 18 N 1.31512 * 119.99973 * 353.32348 * 17 15 14 19 19 Si 1.86802 * 119.99922 * 173.31569 * 17 15 14 20 20 H 1.48490 * 109.47187 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46730 * 120.00394 * 19 17 15 22 22 H 1.48500 * 109.46992 * 240.00220 * 19 17 15 23 23 C 1.53001 * 117.50003 * 279.64932 * 14 13 12 24 24 C 1.53000 * 117.49801 * 210.98970 * 14 13 12 25 25 S 1.70926 * 124.71060 * 180.32295 * 2 1 3 26 26 H 1.08999 * 109.47335 * 89.99691 * 1 2 3 27 27 H 1.09007 * 109.46810 * 209.99312 * 1 2 3 28 28 H 1.08992 * 109.47049 * 329.99116 * 1 2 3 29 29 H 1.09005 * 109.46675 * 29.97774 * 5 4 3 30 30 H 1.08991 * 109.47217 * 149.98008 * 5 4 3 31 31 H 1.09000 * 109.47116 * 304.99728 * 6 5 4 32 32 H 1.09006 * 109.46911 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47273 * 299.99731 * 7 6 5 34 34 H 1.08996 * 109.47592 * 60.00192 * 7 6 5 35 35 H 1.09000 * 109.47435 * 60.00020 * 8 6 5 36 36 H 1.09006 * 109.46701 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47277 * 299.99768 * 8 6 5 38 38 H 1.09001 * 109.46808 * 302.77240 * 13 12 10 39 39 H 1.08997 * 109.47053 * 62.77007 * 13 12 10 40 40 H 0.97004 * 120.00245 * 185.04714 * 18 17 15 41 41 H 1.09001 * 117.49560 * 359.97438 * 23 14 13 42 42 H 1.08997 * 117.50509 * 145.02185 * 23 14 13 43 43 H 1.09004 * 117.49862 * 214.98111 * 24 14 13 44 44 H 1.09000 * 117.50219 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0638 0.0000 4 6 3.5424 0.8988 0.0005 5 6 4.5166 2.0486 0.0011 6 6 4.8472 2.4377 -1.4412 7 6 3.5886 2.9739 -2.1261 8 6 5.9288 3.5198 -1.4422 9 6 3.9353 -0.4111 0.0004 10 6 5.3165 -0.8998 0.0004 11 8 6.2409 -0.1097 0.0072 12 8 5.5626 -2.2258 -0.0015 13 6 6.9504 -2.6386 -0.1116 14 6 7.0255 -4.1657 -0.1664 15 6 6.4059 -4.8038 -1.3830 16 1 5.3799 -5.1398 -1.3532 17 6 7.1488 -4.9584 -2.5342 18 7 8.3517 -4.4333 -2.6160 19 14 6.4465 -5.9138 -3.9776 20 1 5.0854 -6.3986 -3.6351 21 1 6.3714 -5.0285 -5.1676 22 1 7.3245 -7.0732 -4.2778 23 6 6.9264 -4.9259 1.1577 24 6 8.2679 -4.8336 0.4262 25 16 2.4803 -1.4051 -0.0079 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8898 0.5139 29 1 4.0720 2.9012 0.5146 30 1 5.4301 1.7506 0.5156 31 1 5.2089 1.5619 -1.9799 32 1 3.8241 3.2506 -3.1538 33 1 2.8180 2.2029 -2.1253 34 1 3.2269 3.8497 -1.5874 35 1 6.8255 3.1378 -0.9543 36 1 6.1647 3.7967 -2.4698 37 1 5.5671 4.3956 -0.9035 38 1 7.3827 -2.2207 -1.0207 39 1 7.5063 -2.2783 0.7540 40 1 8.8451 -4.4785 -3.4500 41 1 6.8081 -4.3380 2.0679 42 1 6.4135 -5.8876 1.1488 43 1 8.6369 -5.7347 -0.0637 44 1 9.0320 -4.1851 0.8548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756296877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:50 Heat of formation + Delta-G solvation = -51.570314 kcal Electronic energy + Delta-G solvation = -25348.591411 eV Core-core repulsion = 21778.587680 eV Total energy + Delta-G solvation = -3570.003730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74799 -40.74188 -38.58633 -37.25529 -36.80612 -34.04264 -33.42425 -30.32751 -29.27513 -28.27002 -28.00533 -27.23685 -24.20896 -23.55986 -22.93625 -21.24750 -21.20191 -20.41292 -19.35382 -18.33615 -17.93096 -17.46130 -17.22137 -16.61075 -16.19928 -15.98461 -15.73791 -15.48578 -14.97081 -14.81606 -14.54065 -14.08877 -13.96001 -13.85862 -13.57709 -13.35493 -13.21569 -13.12118 -12.93231 -12.87950 -12.79259 -12.57850 -12.40652 -12.11573 -11.96608 -11.91059 -11.76476 -11.67417 -11.57044 -11.37856 -10.83546 -10.81331 -10.60669 -10.51511 -10.12299 -9.79828 -8.15223 -6.27089 -0.96272 0.10149 0.55831 1.15020 1.37779 1.40851 1.51801 1.63592 1.82054 2.39920 2.90354 3.12022 3.39416 3.66826 3.77316 3.91070 3.94000 4.07705 4.10779 4.22411 4.34958 4.43320 4.54671 4.61951 4.67180 4.67907 4.68765 4.76474 4.80269 4.81687 4.93673 4.94732 4.97489 5.09271 5.15933 5.17226 5.24420 5.38723 5.40833 5.42141 5.54183 5.60629 5.73164 6.32892 6.48432 6.65800 6.77827 7.41438 8.92966 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004016 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.001225 B = 6969.750812 C = 7482.303399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.068 3.932 3 N -0.489 5.489 4 C 0.173 3.827 5 C -0.052 4.052 6 C -0.084 4.084 7 C -0.135 4.135 8 C -0.138 4.138 9 C -0.332 4.332 10 C 0.533 3.467 11 O -0.522 6.522 12 O -0.344 6.344 13 C 0.132 3.868 14 C 0.002 3.998 15 C -0.502 4.502 16 H 0.055 0.945 17 C 0.025 3.975 18 N -0.909 5.909 19 Si 0.949 3.051 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.277 1.277 23 C -0.178 4.178 24 C -0.142 4.142 25 S 0.223 5.777 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 11.897 5.208 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.205 4.205 3 N -0.205 5.205 4 C 0.032 3.968 5 C -0.092 4.092 6 C -0.103 4.103 7 C -0.193 4.193 8 C -0.195 4.195 9 C -0.454 4.454 10 C 0.378 3.622 11 O -0.415 6.415 12 O -0.260 6.260 13 C 0.059 3.941 14 C 0.001 3.999 15 C -0.540 4.540 16 H 0.073 0.927 17 C -0.176 4.176 18 N -0.547 5.547 19 Si 0.774 3.226 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.203 1.203 23 C -0.215 4.215 24 C -0.180 4.180 25 S 0.483 5.517 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.230 11.374 5.121 19.686 hybrid contribution 1.206 0.023 -0.989 1.560 sum -14.025 11.397 4.132 18.538 Atomic orbital electron populations 1.20828 0.81110 1.06332 1.05926 1.28415 1.04044 0.91013 0.97020 1.66211 1.03283 1.31719 1.19243 1.21117 0.90786 0.92454 0.92460 1.20607 0.96044 0.93693 0.98845 1.20945 0.97169 0.98323 0.93894 1.21777 0.96050 1.01139 1.00294 1.21751 0.97394 0.97992 1.02409 1.24720 0.96022 0.98208 1.26404 1.19813 0.88163 0.81476 0.72760 1.90765 1.45965 1.56923 1.47845 1.86602 1.33426 1.23300 1.82645 1.22583 0.76383 0.96295 0.98886 1.18893 1.00241 0.87624 0.93094 1.20633 0.97729 1.39045 0.96603 0.92689 1.25703 0.94925 0.95992 1.00935 1.70080 1.12600 1.45346 1.26684 0.85641 0.78977 0.78737 0.79215 1.18790 1.20989 1.20295 1.23021 1.00678 1.02230 0.95547 1.22465 0.90579 1.01963 1.02954 1.84245 0.93751 1.09522 1.64218 0.87225 0.87376 0.87599 0.88179 0.89691 0.94437 0.92292 0.93939 0.91012 0.93511 0.91865 0.90671 0.93973 0.93042 0.92954 0.89232 0.89481 0.91057 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.46 71.23 0.74 -0.14 16 2 C 0.07 1.47 7.37 88.47 0.65 2.12 16 3 N -0.49 -12.70 9.64 -177.56 -1.71 -14.41 16 4 C 0.17 5.25 5.36 42.35 0.23 5.47 16 5 C -0.05 -1.47 4.53 29.85 0.14 -1.33 16 6 C -0.08 -2.26 2.91 -10.79 -0.03 -2.29 16 7 C -0.14 -3.08 8.98 71.98 0.65 -2.43 16 8 C -0.14 -3.13 9.19 71.98 0.66 -2.47 16 9 C -0.33 -11.48 6.52 24.08 0.16 -11.32 16 10 C 0.53 22.40 7.92 69.98 0.55 22.96 16 11 O -0.52 -23.16 14.13 19.50 0.28 -22.88 16 12 O -0.34 -15.81 10.06 -57.88 -0.58 -16.39 16 13 C 0.13 6.46 5.30 71.98 0.38 6.84 16 14 C 0.00 0.10 1.63 -52.93 -0.09 0.01 16 15 C -0.50 -27.58 8.78 25.60 0.22 -27.36 16 16 H 0.05 3.03 7.82 -2.91 -0.02 3.01 16 17 C 0.02 1.36 5.38 84.65 0.46 1.82 16 18 N -0.91 -52.11 12.87 21.45 0.28 -51.84 16 19 Si 0.95 43.35 29.55 68.60 2.03 45.38 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 C -0.18 -7.53 9.96 30.62 0.30 -7.23 16 24 C -0.14 -6.57 9.36 30.62 0.29 -6.29 16 25 S 0.22 5.99 23.04 -56.49 -1.30 4.69 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.08 2.73 6.05 -2.39 -0.01 2.71 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.04 1.07 6.75 -2.39 -0.02 1.05 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 2.35 8.09 -2.39 -0.02 2.33 16 40 H 0.26 14.31 8.32 -92.71 -0.77 13.53 16 41 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.07 3.51 8.14 -2.39 -0.02 3.49 16 44 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -66.03 383.38 5.28 -60.74 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.99 Total: 16.36 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 5.31 Total: -21.65 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -1.44 Total: -66.25 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.31 Total: -39.28 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.30 Total: 4.69 kcal Total: -66.03 5.28 -60.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756296877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.173 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds