Wall clock time and date at job start Tue Mar 31 2020 14:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99785 * 2 1 4 4 C 1.52996 * 109.47058 * 60.00196 * 3 2 1 5 5 C 1.52998 * 109.46868 * 299.99717 * 3 2 1 6 6 C 1.53009 * 109.46884 * 180.02562 * 3 2 1 7 7 N 1.46493 * 109.47224 * 64.99689 * 6 3 2 8 8 C 1.46495 * 120.00529 * 270.00148 * 7 6 3 9 9 C 1.34780 * 119.99847 * 90.00203 * 7 6 3 10 10 O 1.21609 * 119.99823 * 355.64985 * 9 7 6 11 11 C 1.47429 * 120.00126 * 175.65551 * 9 7 6 12 12 C 1.39675 * 120.21641 * 312.80459 * 11 9 7 13 13 C 1.37809 * 119.94043 * 179.97438 * 12 11 9 14 14 C 1.38657 * 120.38184 * 0.02562 * 13 12 11 15 15 C 1.37911 * 120.43719 * 359.97438 * 14 13 12 16 16 C 1.39110 * 120.05013 * 359.97438 * 15 14 13 17 17 S 1.76203 * 120.18820 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00168 * 352.84947 * 17 16 15 19 19 H 1.08003 * 119.99532 * 4.17486 * 18 17 16 20 20 C 1.38800 * 120.00148 * 184.17515 * 18 17 16 21 21 N 1.31552 * 119.99876 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46786 * 60.00141 * 22 20 18 24 24 H 1.48493 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46831 * 300.00421 * 22 20 18 26 26 H 1.08994 * 109.47313 * 60.00109 * 1 2 3 27 27 H 1.09007 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46881 * 299.99834 * 1 2 3 29 29 H 1.09001 * 109.47003 * 180.02562 * 4 3 2 30 30 H 1.08993 * 109.47046 * 299.99743 * 4 3 2 31 31 H 1.08998 * 109.47173 * 59.99906 * 4 3 2 32 32 H 1.08993 * 109.47803 * 300.00165 * 5 3 2 33 33 H 1.09005 * 109.46899 * 60.00616 * 5 3 2 34 34 H 1.09001 * 109.46983 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47068 * 304.99955 * 6 3 2 36 36 H 1.08997 * 109.46911 * 185.00354 * 6 3 2 37 37 H 1.09003 * 109.47016 * 273.46424 * 8 7 6 38 38 H 1.09004 * 109.46946 * 33.45605 * 8 7 6 39 39 H 1.08998 * 109.47669 * 153.46166 * 8 7 6 40 40 H 1.08000 * 120.02764 * 0.25669 * 12 11 9 41 41 H 1.08001 * 119.80459 * 179.97438 * 13 12 11 42 42 H 1.07992 * 119.77944 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.97436 * 180.02562 * 15 14 13 44 44 H 0.96998 * 119.99836 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5355 1.1847 -0.0006 7 7 3.9757 0.5644 -1.2526 8 6 4.1052 -0.8920 -1.3427 9 6 4.2615 1.3337 -2.3218 10 8 4.0787 2.5350 -2.2727 11 6 4.7957 0.7189 -3.5507 12 6 5.8459 -0.1991 -3.4782 13 6 6.3405 -0.7707 -4.6305 14 6 5.8019 -0.4397 -5.8645 15 6 4.7648 0.4648 -5.9543 16 6 4.2509 1.0520 -4.8026 17 16 2.9263 2.2086 -4.9131 18 6 2.8215 2.3876 -6.6628 19 1 3.4471 1.7860 -7.3056 20 6 1.9350 3.3018 -7.2151 21 7 1.1734 4.0349 -6.4321 22 14 1.8243 3.4921 -9.0701 23 1 1.4284 2.1963 -9.6778 24 1 0.8108 4.5253 -9.4022 25 1 3.1463 3.9062 -9.6049 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0017 3.0607 1.2490 30 1 0.4722 2.1508 1.2492 31 1 1.8804 1.5238 2.1392 32 1 1.8803 1.5238 -2.1392 33 1 0.4720 2.1508 -1.2492 34 1 2.0016 3.0606 -1.2491 35 1 3.8515 0.5682 0.8409 36 1 3.9785 2.1765 0.0890 37 1 5.0946 -1.1909 -0.9965 38 1 3.3447 -1.3636 -0.7203 39 1 3.9727 -1.2053 -2.3783 40 1 6.2668 -0.4642 -2.5196 41 1 7.1528 -1.4800 -4.5719 42 1 6.1973 -0.8932 -6.7613 43 1 4.3506 0.7170 -6.9194 44 1 0.5541 4.6740 -6.8180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758869737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:03 Heat of formation + Delta-G solvation = -45.642183 kcal Electronic energy + Delta-G solvation = -26156.337552 eV Core-core repulsion = 22586.590885 eV Total energy + Delta-G solvation = -3569.746667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09321 -38.58149 -37.35775 -35.04822 -32.81029 -32.70355 -30.54103 -30.31379 -27.57357 -27.19339 -26.60740 -25.87599 -25.49405 -22.60600 -21.98299 -20.03427 -19.27382 -17.90024 -16.95653 -16.33514 -16.02911 -15.87350 -15.61856 -15.13120 -14.92682 -14.57631 -14.34985 -13.92581 -13.54358 -13.21288 -13.02316 -12.92338 -12.60996 -12.53798 -12.33365 -12.21357 -11.93321 -11.74366 -11.64439 -11.61570 -11.39123 -11.18883 -11.13274 -11.04740 -10.93419 -10.48567 -10.32618 -9.79481 -9.55990 -9.47329 -9.31405 -8.75102 -8.47053 -8.29650 -8.21546 -6.53272 -6.48015 -4.18255 1.65714 2.01970 3.08350 3.13675 3.17341 3.24115 3.37324 3.46473 3.88176 4.03003 4.38919 4.88717 4.93810 4.97242 5.06280 5.13565 5.18879 5.37771 5.38611 5.49520 5.50874 5.54624 5.60520 5.64068 5.69034 5.78453 5.83591 5.89953 5.94557 6.04893 6.06920 6.14746 6.27863 6.30128 6.38144 6.59025 6.81339 6.86904 6.90966 7.02579 7.13763 7.34944 7.44045 7.59013 7.78123 8.14634 8.72384 8.98386 10.57088 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.004987 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.488593 B = 5612.687829 C = 7243.761395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.094 3.906 4 C -0.175 4.175 5 C -0.169 4.169 6 C 0.136 3.864 7 N -0.611 5.611 8 C 0.084 3.916 9 C 0.565 3.435 10 O -0.512 6.512 11 C -0.162 4.162 12 C -0.066 4.066 13 C -0.181 4.181 14 C -0.080 4.080 15 C -0.154 4.154 16 C -0.049 4.049 17 S 0.110 5.890 18 C -0.570 4.570 19 H 0.093 0.907 20 C 0.081 3.919 21 N -0.860 5.860 22 Si 0.922 3.078 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.269 1.269 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.138 0.862 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -9.318 12.063 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.297 6.297 3 C 0.054 3.946 4 C -0.233 4.233 5 C -0.227 4.227 6 C 0.013 3.987 7 N -0.345 5.345 8 C -0.059 4.059 9 C 0.355 3.645 10 O -0.387 6.387 11 C -0.176 4.176 12 C -0.086 4.086 13 C -0.206 4.206 14 C -0.101 4.101 15 C -0.179 4.179 16 C -0.167 4.167 17 S 0.372 5.628 18 C -0.717 4.717 19 H 0.110 0.890 20 C -0.130 4.130 21 N -0.492 5.492 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.194 1.194 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.861 -7.880 12.886 15.219 hybrid contribution 0.409 -0.385 -2.125 2.198 sum 2.270 -8.265 10.762 13.758 Atomic orbital electron populations 1.22733 0.81950 1.02105 1.00203 1.87899 1.19222 1.27547 1.95081 1.22061 0.94032 0.83432 0.95060 1.22348 1.02041 1.01105 0.97767 1.22411 1.00471 1.01979 0.97809 1.21391 0.91202 0.99929 0.86175 1.47627 1.67810 1.07224 1.11791 1.21851 1.00690 0.79849 1.03558 1.18346 0.76990 0.86488 0.82713 1.90805 1.51740 1.14288 1.81882 1.19148 1.02298 1.04242 0.91867 1.20963 0.95197 0.94421 0.98019 1.20661 1.03044 1.04269 0.92577 1.21071 0.95524 0.96474 0.97058 1.21408 0.98759 0.98983 0.98792 1.22892 1.00410 0.99601 0.93808 1.83949 1.28328 1.41960 1.08604 1.23552 1.28076 1.27589 0.92504 0.88959 1.25089 0.94047 0.93834 1.00001 1.69963 1.21635 1.21686 1.35963 0.86154 0.78491 0.78406 0.82252 1.19489 1.20556 1.19438 0.93542 0.90200 0.94255 0.91208 0.92040 0.92061 0.90872 0.93287 0.90444 0.90320 0.88651 0.93466 0.90752 0.90584 0.86692 0.87009 0.87015 0.84436 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.21 101.05 1.03 1.34 16 2 O -0.38 -5.20 9.12 -35.23 -0.32 -5.52 16 3 C 0.09 1.30 0.91 -90.62 -0.08 1.22 16 4 C -0.17 -1.93 8.25 37.16 0.31 -1.62 16 5 C -0.17 -2.92 6.82 37.16 0.25 -2.67 16 6 C 0.14 1.85 4.80 -4.04 -0.02 1.83 16 7 N -0.61 -9.47 2.53 -182.85 -0.46 -9.94 16 8 C 0.08 1.07 8.91 59.84 0.53 1.60 16 9 C 0.57 11.01 5.14 -12.52 -0.06 10.95 16 10 O -0.51 -11.54 13.05 5.27 0.07 -11.47 16 11 C -0.16 -3.22 4.77 -104.75 -0.50 -3.72 16 12 C -0.07 -1.08 7.86 -39.20 -0.31 -1.38 16 13 C -0.18 -2.81 10.02 -39.58 -0.40 -3.20 16 14 C -0.08 -1.36 10.03 -39.55 -0.40 -1.76 16 15 C -0.15 -3.21 9.25 -39.38 -0.36 -3.57 16 16 C -0.05 -1.10 6.13 -38.39 -0.24 -1.34 16 17 S 0.11 2.91 19.64 -107.50 -2.11 0.80 16 18 C -0.57 -15.64 9.08 30.94 0.28 -15.36 16 19 H 0.09 2.40 4.84 -52.48 -0.25 2.14 16 20 C 0.08 2.21 5.49 -17.46 -0.10 2.11 16 21 N -0.86 -24.60 13.22 55.49 0.73 -23.86 16 22 Si 0.92 20.62 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H 0.05 0.59 6.42 -51.93 -0.33 0.26 16 27 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.04 0.40 6.42 -51.93 -0.33 0.06 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.49 6.19 -51.93 -0.32 1.17 16 33 H 0.05 0.79 6.54 -51.93 -0.34 0.45 16 34 H 0.08 1.45 7.33 -51.93 -0.38 1.07 16 35 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.10 1.34 7.48 -51.93 -0.39 0.95 16 37 H 0.05 0.49 7.37 -51.93 -0.38 0.11 16 38 H 0.07 0.89 7.06 -51.93 -0.37 0.53 16 39 H 0.08 1.07 6.20 -51.93 -0.32 0.75 16 40 H 0.12 1.55 6.68 -52.49 -0.35 1.20 16 41 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.14 2.98 4.97 -52.48 -0.26 2.72 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -31.39 357.06 -7.83 -39.22 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.04 Total: 5.36 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -0.06 Total: -15.57 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.27 Total: -33.80 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.25 Total: -16.99 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.11 Total: 0.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.39 -7.83 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758869737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.418 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds