Wall clock time and date at job start Tue Mar 31 2020 14:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99785 * 2 1 4 4 C 1.52996 * 109.47058 * 60.00196 * 3 2 1 5 5 C 1.52998 * 109.46868 * 299.99717 * 3 2 1 6 6 C 1.53009 * 109.46884 * 180.02562 * 3 2 1 7 7 N 1.46493 * 109.47224 * 64.99689 * 6 3 2 8 8 C 1.46495 * 120.00529 * 270.00148 * 7 6 3 9 9 C 1.34780 * 119.99847 * 90.00203 * 7 6 3 10 10 O 1.21609 * 119.99823 * 355.64985 * 9 7 6 11 11 C 1.47429 * 120.00126 * 175.65551 * 9 7 6 12 12 C 1.39675 * 120.21641 * 312.80459 * 11 9 7 13 13 C 1.37809 * 119.94043 * 179.97438 * 12 11 9 14 14 C 1.38657 * 120.38184 * 0.02562 * 13 12 11 15 15 C 1.37911 * 120.43719 * 359.97438 * 14 13 12 16 16 C 1.39110 * 120.05013 * 359.97438 * 15 14 13 17 17 S 1.76203 * 120.18820 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00168 * 352.84947 * 17 16 15 19 19 H 1.08003 * 119.99532 * 4.17486 * 18 17 16 20 20 C 1.38800 * 120.00148 * 184.17515 * 18 17 16 21 21 N 1.31552 * 119.99876 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46786 * 60.00141 * 22 20 18 24 24 H 1.48493 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46831 * 300.00421 * 22 20 18 26 26 H 1.08994 * 109.47313 * 60.00109 * 1 2 3 27 27 H 1.09007 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46881 * 299.99834 * 1 2 3 29 29 H 1.09001 * 109.47003 * 180.02562 * 4 3 2 30 30 H 1.08993 * 109.47046 * 299.99743 * 4 3 2 31 31 H 1.08998 * 109.47173 * 59.99906 * 4 3 2 32 32 H 1.08993 * 109.47803 * 300.00165 * 5 3 2 33 33 H 1.09005 * 109.46899 * 60.00616 * 5 3 2 34 34 H 1.09001 * 109.46983 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47068 * 304.99955 * 6 3 2 36 36 H 1.08997 * 109.46911 * 185.00354 * 6 3 2 37 37 H 1.09003 * 109.47016 * 273.46424 * 8 7 6 38 38 H 1.09004 * 109.46946 * 33.45605 * 8 7 6 39 39 H 1.08998 * 109.47669 * 153.46166 * 8 7 6 40 40 H 1.08000 * 120.02764 * 0.25669 * 12 11 9 41 41 H 1.08001 * 119.80459 * 179.97438 * 13 12 11 42 42 H 1.07992 * 119.77944 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.97436 * 180.02562 * 15 14 13 44 44 H 0.96998 * 119.99836 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5355 1.1847 -0.0006 7 7 3.9757 0.5644 -1.2526 8 6 4.1052 -0.8920 -1.3427 9 6 4.2615 1.3337 -2.3218 10 8 4.0787 2.5350 -2.2727 11 6 4.7957 0.7189 -3.5507 12 6 5.8459 -0.1991 -3.4782 13 6 6.3405 -0.7707 -4.6305 14 6 5.8019 -0.4397 -5.8645 15 6 4.7648 0.4648 -5.9543 16 6 4.2509 1.0520 -4.8026 17 16 2.9263 2.2086 -4.9131 18 6 2.8215 2.3876 -6.6628 19 1 3.4471 1.7860 -7.3056 20 6 1.9350 3.3018 -7.2151 21 7 1.1734 4.0349 -6.4321 22 14 1.8243 3.4921 -9.0701 23 1 1.4284 2.1963 -9.6778 24 1 0.8108 4.5253 -9.4022 25 1 3.1463 3.9062 -9.6049 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0017 3.0607 1.2490 30 1 0.4722 2.1508 1.2492 31 1 1.8804 1.5238 2.1392 32 1 1.8803 1.5238 -2.1392 33 1 0.4720 2.1508 -1.2492 34 1 2.0016 3.0606 -1.2491 35 1 3.8515 0.5682 0.8409 36 1 3.9785 2.1765 0.0890 37 1 5.0946 -1.1909 -0.9965 38 1 3.3447 -1.3636 -0.7203 39 1 3.9727 -1.2053 -2.3783 40 1 6.2668 -0.4642 -2.5196 41 1 7.1528 -1.4800 -4.5719 42 1 6.1973 -0.8932 -6.7613 43 1 4.3506 0.7170 -6.9194 44 1 0.5541 4.6740 -6.8180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758869737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:02 Heat of formation + Delta-G solvation = -65.251689 kcal Electronic energy + Delta-G solvation = -26157.187884 eV Core-core repulsion = 22586.590885 eV Total energy + Delta-G solvation = -3570.596999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43722 -39.82722 -38.77557 -36.37152 -34.79376 -33.89703 -31.98442 -31.79795 -28.69165 -28.36094 -27.88473 -27.66723 -26.72894 -24.00366 -23.46047 -21.34216 -20.60867 -19.65000 -18.37633 -17.73289 -17.43216 -17.13954 -17.00917 -16.79248 -16.09080 -15.97885 -15.66915 -15.34749 -14.99423 -14.63474 -14.56692 -14.10006 -13.91444 -13.78323 -13.62955 -13.37196 -13.31914 -13.09350 -12.96575 -12.91131 -12.87405 -12.73484 -12.56814 -12.55934 -12.16831 -12.06545 -11.58880 -11.47185 -11.38471 -10.98146 -10.49166 -10.48037 -10.22229 -9.75039 -9.49828 -8.49784 -8.45121 -6.25677 0.17787 0.53918 1.24854 1.37212 1.42637 1.61325 1.82282 2.14587 2.22086 2.81277 2.85006 2.98563 3.18347 3.71311 3.80644 3.96158 4.03660 4.06839 4.25815 4.42166 4.46124 4.51259 4.51595 4.61774 4.64293 4.65693 4.68521 4.71437 4.81912 4.87432 4.89123 4.91008 5.00433 5.11904 5.12701 5.20489 5.36672 5.40404 5.49376 5.54502 5.68102 5.70259 6.08340 6.16461 6.27092 6.46658 6.92945 7.30522 8.58378 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.004987 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.488593 B = 5612.687829 C = 7243.761395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.385 6.385 3 C 0.100 3.900 4 C -0.168 4.168 5 C -0.160 4.160 6 C 0.132 3.868 7 N -0.603 5.603 8 C 0.080 3.920 9 C 0.558 3.442 10 O -0.556 6.556 11 C -0.167 4.167 12 C -0.060 4.060 13 C -0.151 4.151 14 C -0.076 4.076 15 C -0.173 4.173 16 C -0.071 4.071 17 S 0.010 5.990 18 C -0.580 4.580 19 H 0.097 0.903 20 C 0.023 3.977 21 N -0.904 5.904 22 Si 0.995 3.005 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.262 1.262 26 H 0.024 0.976 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.149 0.851 43 H 0.119 0.881 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 -12.708 13.305 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.304 6.304 3 C 0.059 3.941 4 C -0.226 4.226 5 C -0.218 4.218 6 C 0.009 3.991 7 N -0.335 5.335 8 C -0.062 4.062 9 C 0.347 3.653 10 O -0.434 6.434 11 C -0.179 4.179 12 C -0.080 4.080 13 C -0.174 4.174 14 C -0.096 4.096 15 C -0.198 4.198 16 C -0.188 4.188 17 S 0.266 5.734 18 C -0.727 4.727 19 H 0.115 0.885 20 C -0.183 4.183 21 N -0.539 5.539 22 Si 0.816 3.184 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.187 1.187 26 H 0.043 0.957 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.495 -11.372 14.170 18.717 hybrid contribution -0.195 0.416 -2.362 2.406 sum 4.300 -10.956 11.808 16.672 Atomic orbital electron populations 1.22873 0.80938 1.03425 1.00124 1.87866 1.20331 1.27140 1.95070 1.21980 0.94335 0.83483 0.94269 1.22289 1.02339 1.00975 0.97011 1.22295 1.00122 1.00711 0.98663 1.21607 0.90881 1.00306 0.86276 1.47668 1.66241 1.08256 1.11287 1.22054 1.03222 0.77817 1.03084 1.18458 0.77055 0.86219 0.83562 1.90786 1.53679 1.16302 1.82654 1.19506 1.02879 1.04452 0.91070 1.21433 0.93371 0.92726 1.00490 1.21312 1.02306 1.02695 0.91063 1.21494 0.93700 0.94784 0.99629 1.21436 1.00435 1.00563 0.97413 1.22796 1.00250 0.99803 0.95931 1.84078 1.33241 1.46727 1.09346 1.23833 1.28302 1.27849 0.92732 0.88516 1.26151 0.93551 0.93369 1.05206 1.70120 1.22858 1.22856 1.38090 0.85049 0.78732 0.78808 0.75805 1.18294 1.19858 1.18694 0.95701 0.88223 0.92256 0.91264 0.91637 0.89523 0.94405 0.93385 0.93019 0.86465 0.89630 0.89758 0.89646 0.92126 0.82740 0.81739 0.83317 0.86362 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.21 113.37 1.16 1.66 16 2 O -0.38 -10.05 9.12 -148.98 -1.36 -11.41 16 3 C 0.10 2.71 0.91 -10.79 -0.01 2.70 16 4 C -0.17 -3.48 8.25 71.98 0.59 -2.88 16 5 C -0.16 -5.98 6.82 71.98 0.49 -5.49 16 6 C 0.13 3.40 4.80 86.38 0.41 3.81 16 7 N -0.60 -18.05 2.53 -850.66 -2.15 -20.20 16 8 C 0.08 1.80 8.91 127.77 1.14 2.94 16 9 C 0.56 22.23 5.14 86.66 0.45 22.67 16 10 O -0.56 -26.76 13.05 -4.06 -0.05 -26.81 16 11 C -0.17 -6.61 4.77 -19.95 -0.10 -6.70 16 12 C -0.06 -1.74 7.86 22.52 0.18 -1.56 16 13 C -0.15 -3.85 10.02 22.27 0.22 -3.63 16 14 C -0.08 -2.33 10.03 22.29 0.22 -2.10 16 15 C -0.17 -7.28 9.25 22.40 0.21 -7.08 16 16 C -0.07 -3.36 6.13 23.04 0.14 -3.21 16 17 S 0.01 0.57 19.64 -56.49 -1.11 -0.54 16 18 C -0.58 -33.98 9.08 67.95 0.62 -33.36 16 19 H 0.10 5.34 4.84 -2.91 -0.01 5.32 16 20 C 0.02 1.32 5.49 84.87 0.47 1.78 16 21 N -0.90 -55.36 13.22 21.64 0.29 -55.07 16 22 Si 1.00 44.02 29.55 68.60 2.03 46.04 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 H 0.02 0.66 6.42 -2.39 -0.02 0.64 16 27 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.06 1.09 6.42 -2.39 -0.02 1.07 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.30 6.54 -2.39 -0.02 1.28 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.67 6.19 -2.39 -0.01 1.65 16 33 H 0.05 1.71 6.54 -2.38 -0.02 1.69 16 34 H 0.05 2.14 7.33 -2.39 -0.02 2.13 16 35 H 0.12 2.14 8.07 -2.39 -0.02 2.12 16 36 H 0.09 2.40 7.48 -2.39 -0.02 2.38 16 37 H 0.08 1.31 7.37 -2.39 -0.02 1.29 16 38 H 0.08 1.77 7.06 -2.39 -0.02 1.75 16 39 H 0.06 1.57 6.20 -2.39 -0.01 1.55 16 40 H 0.16 3.25 6.68 -2.91 -0.02 3.23 16 41 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.12 5.35 4.97 -2.91 -0.01 5.34 16 44 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -77.82 357.06 4.85 -72.97 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.02 Total: 25.47 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 6.19 Total: -30.45 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.87 Total: -75.28 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.41 Total: -38.22 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -1.11 Total: -0.54 kcal Total: -77.82 4.85 -72.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758869737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.722 kcal (2) G-P(sol) polarization free energy of solvation -77.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds