Wall clock time and date at job start Tue Mar 31 2020 13:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50692 * 109.47741 * 2 1 4 4 C 1.38137 * 120.50477 * 264.72550 * 3 2 1 5 5 N 1.31815 * 120.89985 * 179.69624 * 4 3 2 6 6 C 1.31852 * 122.05578 * 0.59335 * 5 4 3 7 7 C 1.38092 * 120.90011 * 359.69460 * 6 5 4 8 8 C 1.39846 * 120.50362 * 84.99544 * 3 2 1 9 9 C 1.48187 * 120.92037 * 0.02897 * 8 3 2 10 10 O 1.21688 * 120.00112 * 0.02562 * 9 8 3 11 11 C 1.46123 * 119.99546 * 179.97438 * 9 8 3 12 12 C 1.35164 * 119.99867 * 173.49164 * 11 9 8 13 13 C 1.47082 * 119.99785 * 348.73574 * 12 11 9 14 14 C 1.39981 * 120.14385 * 136.91805 * 13 12 11 15 15 C 1.37909 * 119.95717 * 179.97438 * 14 13 12 16 16 C 1.38305 * 120.25301 * 359.97438 * 15 14 13 17 17 C 1.39020 * 120.29165 * 359.97438 * 16 15 14 18 18 O 1.35768 * 119.97976 * 180.02562 * 17 16 15 19 19 C 1.34829 * 116.99674 * 354.38476 * 18 17 16 20 20 H 1.07994 * 120.00578 * 5.05165 * 19 18 17 21 21 C 1.38660 * 119.99974 * 185.04272 * 19 18 17 22 22 N 1.31547 * 120.00470 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99631 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46677 * 90.00004 * 23 21 19 25 25 H 1.48494 * 109.46913 * 209.99855 * 23 21 19 26 26 H 1.48498 * 109.47324 * 330.00259 * 23 21 19 27 27 C 1.38549 * 120.04065 * 359.78458 * 17 16 15 28 28 H 1.08999 * 109.46819 * 300.00422 * 1 2 3 29 29 H 1.09003 * 109.46755 * 59.99580 * 1 2 3 30 30 H 1.08989 * 109.47577 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46755 * 120.00419 * 2 1 3 32 32 H 1.09002 * 109.47264 * 239.99824 * 2 1 3 33 33 H 1.07996 * 119.54539 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.55228 * 179.72025 * 6 5 4 35 35 H 1.08003 * 120.50203 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.00187 * 353.48597 * 11 9 8 37 37 H 1.07997 * 119.99778 * 168.73209 * 12 11 9 38 38 H 1.07999 * 120.02020 * 359.97438 * 14 13 12 39 39 H 1.07997 * 119.87293 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.85137 * 179.97438 * 16 15 14 41 41 H 0.97004 * 120.00452 * 180.02562 * 22 21 19 42 42 H 1.07992 * 120.12731 * 180.25376 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3694 2.0453 -1.1851 5 7 2.8041 3.2897 -1.1947 6 6 2.9486 3.9890 -0.0864 7 6 2.6407 3.4410 1.1432 8 6 2.1700 2.1250 1.2003 9 6 1.8273 1.4943 2.4968 10 8 1.4201 0.3480 2.5270 11 6 1.9793 2.2488 3.7389 12 6 1.5445 1.7237 4.9060 13 6 0.7029 0.5174 4.9014 14 6 0.9416 -0.5098 5.8220 15 6 0.1498 -1.6389 5.8146 16 6 -0.8810 -1.7611 4.9007 17 6 -1.1280 -0.7469 3.9825 18 8 -2.1420 -0.8732 3.0886 19 6 -2.7955 -2.0524 3.0669 20 1 -2.5595 -2.8141 3.7952 21 6 -3.7707 -2.2870 2.1096 22 7 -4.4087 -3.4373 2.0886 23 14 -4.1786 -0.9696 0.8495 24 1 -3.3150 -1.1439 -0.3460 25 1 -5.6044 -1.0895 0.4519 26 1 -3.9407 0.3716 1.4408 27 6 -0.3432 0.3949 3.9824 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 2.2711 1.5081 -2.1169 34 1 3.3123 5.0045 -0.1408 35 1 2.7611 4.0198 2.0470 36 1 2.4391 3.2259 3.7245 37 1 1.8152 2.1898 5.8419 38 1 1.7454 -0.4181 6.5375 39 1 0.3350 -2.4303 6.5257 40 1 -1.4969 -2.6483 4.9004 41 1 -5.0907 -3.6016 1.4187 42 1 -0.5365 1.1854 3.2725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776189637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:02 Heat of formation + Delta-G solvation = 31.248857 kcal Electronic energy + Delta-G solvation = -27036.441555 eV Core-core repulsion = 23334.585182 eV Total energy + Delta-G solvation = -3701.856373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82318 -39.47153 -38.56606 -36.63130 -34.49635 -33.46128 -32.50934 -32.34040 -29.83409 -29.52744 -28.88726 -25.77022 -25.13453 -24.10997 -23.32806 -21.82941 -21.15182 -20.95399 -19.07072 -17.74363 -17.60992 -16.87221 -16.45286 -15.54370 -15.34333 -15.27345 -14.73431 -14.61389 -14.42818 -13.96530 -13.84155 -13.80101 -13.57839 -13.49764 -13.16040 -13.12082 -12.50997 -12.37152 -12.28337 -12.09360 -11.90178 -11.51399 -11.09630 -10.93749 -10.89423 -10.74813 -10.70210 -10.19286 -10.05606 -9.84471 -9.62632 -9.37402 -9.20106 -9.03120 -8.85320 -7.70267 -7.35502 -6.39436 -4.05215 0.32555 0.97425 1.16631 2.28348 2.33591 3.11281 3.21827 3.25927 3.40087 3.77645 3.94779 4.24688 4.27387 4.50680 4.56737 4.70739 4.75666 4.83673 5.04167 5.09237 5.15463 5.25510 5.42038 5.45173 5.55093 5.59704 5.67604 5.71737 5.73193 5.89602 5.96988 5.98821 6.14152 6.22128 6.25301 6.35425 6.48480 6.55347 6.60063 6.70003 6.76824 7.03897 7.14180 7.29263 7.57537 7.71232 7.77897 7.80600 8.05361 8.96504 9.59801 10.68559 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.005213 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.773965 B = 5369.895401 C = 7318.416931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.072 4.072 4 C 0.089 3.911 5 N -0.469 5.469 6 C 0.076 3.924 7 C -0.129 4.129 8 C -0.110 4.110 9 C 0.401 3.599 10 O -0.397 6.397 11 C -0.252 4.252 12 C 0.008 3.992 13 C -0.056 4.056 14 C -0.174 4.174 15 C -0.088 4.088 16 C -0.203 4.203 17 C 0.154 3.846 18 O -0.218 6.218 19 C -0.385 4.385 20 H 0.105 0.895 21 C 0.065 3.935 22 N -0.881 5.881 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.119 4.119 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.278 0.722 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.638 12.652 0.607 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.074 4.074 4 C -0.068 4.068 5 N -0.178 5.178 6 C -0.081 4.081 7 C -0.149 4.149 8 C -0.119 4.119 9 C 0.279 3.721 10 O -0.271 6.271 11 C -0.271 4.271 12 C -0.010 4.010 13 C -0.056 4.056 14 C -0.192 4.192 15 C -0.106 4.106 16 C -0.222 4.222 17 C 0.103 3.897 18 O -0.124 6.124 19 C -0.461 4.461 20 H 0.122 0.878 21 C -0.138 4.138 22 N -0.520 5.520 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.139 4.139 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.346 12.448 -0.451 18.999 hybrid contribution -0.404 0.169 0.214 0.488 sum 13.942 12.617 -0.237 18.805 Atomic orbital electron populations 1.21611 0.93214 1.03109 1.01461 1.20842 0.97365 0.90746 1.04245 1.21345 0.95140 0.98130 0.92809 1.22716 0.95798 0.90781 0.97541 1.67531 1.11039 1.07487 1.31716 1.22684 0.97840 0.99937 0.87599 1.22404 0.97852 0.94682 0.99971 1.20913 1.00594 0.94935 0.95443 1.20365 0.76105 0.87787 0.87822 1.90824 1.30535 1.17521 1.88219 1.23233 1.08833 1.01614 0.93430 1.22664 0.88978 0.92005 0.97351 1.18407 0.95847 0.94386 0.96949 1.20688 1.02160 0.95427 1.00969 1.20655 0.95055 0.96962 0.97956 1.21420 1.01299 1.01125 0.98356 1.18841 0.87834 0.93333 0.89717 1.83582 1.40279 1.36849 1.51697 1.20724 1.17647 0.90608 1.17123 0.87763 1.24401 0.95316 0.96745 0.97301 1.69638 1.24491 1.22281 1.35568 0.86288 0.77488 0.82491 0.81319 1.19624 1.20912 1.18460 1.20036 0.96462 0.97695 0.99677 0.92012 0.93740 0.91411 0.87696 0.91472 0.82448 0.82516 0.84051 0.84966 0.84973 0.87374 0.87122 0.84998 0.91146 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.57 37.16 0.36 -1.99 16 2 C -0.09 -1.38 5.35 -27.89 -0.15 -1.53 16 3 C -0.07 -0.98 5.19 -104.06 -0.54 -1.52 16 4 C 0.09 1.11 10.84 -17.60 -0.19 0.92 16 5 N -0.47 -5.86 10.34 -13.31 -0.14 -6.00 16 6 C 0.08 0.78 11.17 -17.60 -0.20 0.58 16 7 C -0.13 -1.31 9.53 -39.02 -0.37 -1.69 16 8 C -0.11 -1.44 5.91 -104.59 -0.62 -2.06 16 9 C 0.40 5.74 6.10 -32.33 -0.20 5.55 16 10 O -0.40 -7.00 8.10 5.20 0.04 -6.96 16 11 C -0.25 -2.90 9.41 -37.51 -0.35 -3.26 16 12 C 0.01 0.10 9.82 -37.09 -0.36 -0.26 16 13 C -0.06 -0.93 4.55 -105.08 -0.48 -1.41 16 14 C -0.17 -2.83 9.79 -39.05 -0.38 -3.22 16 15 C -0.09 -1.58 10.02 -39.68 -0.40 -1.98 16 16 C -0.20 -4.37 9.17 -39.27 -0.36 -4.73 16 17 C 0.15 3.56 6.64 -39.18 -0.26 3.30 16 18 O -0.22 -5.74 8.58 0.00 0.00 -5.74 16 19 C -0.39 -10.82 9.95 30.89 0.31 -10.51 16 20 H 0.11 3.00 5.42 -52.49 -0.28 2.71 16 21 C 0.07 1.83 5.49 -17.52 -0.10 1.73 16 22 N -0.88 -25.50 13.96 55.48 0.77 -24.73 16 23 Si 0.90 21.83 28.62 -169.99 -4.86 16.96 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.12 -2.38 6.54 -38.89 -0.25 -2.63 16 28 H 0.06 1.19 7.27 -51.93 -0.38 0.81 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.26 8.14 -51.94 -0.42 0.84 16 31 H 0.11 1.72 5.67 -51.93 -0.29 1.42 16 32 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 33 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.14 0.98 6.38 -52.48 -0.34 0.65 16 36 H 0.13 1.03 6.45 -52.49 -0.34 0.69 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.99 5.62 -52.49 -0.29 2.69 16 41 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.11 2.13 7.00 -52.49 -0.37 1.76 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -31.56 352.71 -8.22 -39.78 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.81 Total: 6.07 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -4.55 Total: -24.70 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.64 Total: -30.73 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.04 Total: -12.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.56 -8.22 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776189637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.030 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds