Wall clock time and date at job start Tue Mar 31 2020 13:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50692 * 109.47741 * 2 1 4 4 C 1.38137 * 120.50477 * 264.72550 * 3 2 1 5 5 N 1.31815 * 120.89985 * 179.69624 * 4 3 2 6 6 C 1.31852 * 122.05578 * 0.59335 * 5 4 3 7 7 C 1.38092 * 120.90011 * 359.69460 * 6 5 4 8 8 C 1.39846 * 120.50362 * 84.99544 * 3 2 1 9 9 C 1.48187 * 120.92037 * 0.02897 * 8 3 2 10 10 O 1.21688 * 120.00112 * 0.02562 * 9 8 3 11 11 C 1.46123 * 119.99546 * 179.97438 * 9 8 3 12 12 C 1.35164 * 119.99867 * 173.49164 * 11 9 8 13 13 C 1.47082 * 119.99785 * 348.73574 * 12 11 9 14 14 C 1.39981 * 120.14385 * 136.91805 * 13 12 11 15 15 C 1.37909 * 119.95717 * 179.97438 * 14 13 12 16 16 C 1.38305 * 120.25301 * 359.97438 * 15 14 13 17 17 C 1.39020 * 120.29165 * 359.97438 * 16 15 14 18 18 O 1.35768 * 119.97976 * 180.02562 * 17 16 15 19 19 C 1.34829 * 116.99674 * 354.38476 * 18 17 16 20 20 H 1.07994 * 120.00578 * 5.05165 * 19 18 17 21 21 C 1.38660 * 119.99974 * 185.04272 * 19 18 17 22 22 N 1.31547 * 120.00470 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99631 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46677 * 90.00004 * 23 21 19 25 25 H 1.48494 * 109.46913 * 209.99855 * 23 21 19 26 26 H 1.48498 * 109.47324 * 330.00259 * 23 21 19 27 27 C 1.38549 * 120.04065 * 359.78458 * 17 16 15 28 28 H 1.08999 * 109.46819 * 300.00422 * 1 2 3 29 29 H 1.09003 * 109.46755 * 59.99580 * 1 2 3 30 30 H 1.08989 * 109.47577 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46755 * 120.00419 * 2 1 3 32 32 H 1.09002 * 109.47264 * 239.99824 * 2 1 3 33 33 H 1.07996 * 119.54539 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.55228 * 179.72025 * 6 5 4 35 35 H 1.08003 * 120.50203 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.00187 * 353.48597 * 11 9 8 37 37 H 1.07997 * 119.99778 * 168.73209 * 12 11 9 38 38 H 1.07999 * 120.02020 * 359.97438 * 14 13 12 39 39 H 1.07997 * 119.87293 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.85137 * 179.97438 * 16 15 14 41 41 H 0.97004 * 120.00452 * 180.02562 * 22 21 19 42 42 H 1.07992 * 120.12731 * 180.25376 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3694 2.0453 -1.1851 5 7 2.8041 3.2897 -1.1947 6 6 2.9486 3.9890 -0.0864 7 6 2.6407 3.4410 1.1432 8 6 2.1700 2.1250 1.2003 9 6 1.8273 1.4943 2.4968 10 8 1.4201 0.3480 2.5270 11 6 1.9793 2.2488 3.7389 12 6 1.5445 1.7237 4.9060 13 6 0.7029 0.5174 4.9014 14 6 0.9416 -0.5098 5.8220 15 6 0.1498 -1.6389 5.8146 16 6 -0.8810 -1.7611 4.9007 17 6 -1.1280 -0.7469 3.9825 18 8 -2.1420 -0.8732 3.0886 19 6 -2.7955 -2.0524 3.0669 20 1 -2.5595 -2.8141 3.7952 21 6 -3.7707 -2.2870 2.1096 22 7 -4.4087 -3.4373 2.0886 23 14 -4.1786 -0.9696 0.8495 24 1 -3.3150 -1.1439 -0.3460 25 1 -5.6044 -1.0895 0.4519 26 1 -3.9407 0.3716 1.4408 27 6 -0.3432 0.3949 3.9824 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 2.2711 1.5081 -2.1169 34 1 3.3123 5.0045 -0.1408 35 1 2.7611 4.0198 2.0470 36 1 2.4391 3.2259 3.7245 37 1 1.8152 2.1898 5.8419 38 1 1.7454 -0.4181 6.5375 39 1 0.3350 -2.4303 6.5257 40 1 -1.4969 -2.6483 4.9004 41 1 -5.0907 -3.6016 1.4187 42 1 -0.5365 1.1854 3.2725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776189637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:01 Heat of formation + Delta-G solvation = 13.300922 kcal Electronic energy + Delta-G solvation = -27037.219835 eV Core-core repulsion = 23334.585182 eV Total energy + Delta-G solvation = -3702.634654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82547 -40.88211 -39.90371 -38.20320 -35.61354 -34.64482 -34.39036 -33.49068 -31.20924 -30.76133 -30.27200 -27.28082 -26.72286 -25.11875 -24.54566 -23.17607 -22.63097 -22.05611 -20.38426 -19.49551 -19.01571 -18.02318 -17.51667 -16.99096 -16.63587 -16.44717 -16.08907 -15.98732 -15.64146 -15.53378 -15.43282 -14.93552 -14.79614 -14.66577 -14.46985 -14.33165 -14.21667 -13.93460 -13.68613 -13.47881 -13.14145 -13.02316 -12.69137 -12.46966 -12.43131 -12.19715 -11.99565 -11.98346 -11.33779 -11.09703 -10.94761 -10.80860 -10.66647 -10.22398 -9.95184 -9.09467 -8.98972 -8.51325 -6.21483 -0.69655 0.09107 0.11473 0.75209 0.99745 1.23636 1.28424 1.43727 2.12638 2.23531 2.78229 2.86455 2.98229 3.07722 3.20390 3.46950 3.69747 3.80104 3.89135 3.93345 4.07078 4.19969 4.28554 4.32001 4.36926 4.40992 4.47411 4.55003 4.66540 4.67224 4.75800 4.80959 4.88355 4.91014 5.05807 5.13210 5.23515 5.27477 5.32818 5.39503 5.47243 5.66227 5.68353 5.72224 5.79355 5.91655 6.24200 6.67735 6.84423 6.91987 7.62158 8.60952 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.005213 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.773965 B = 5369.895401 C = 7318.416931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.093 4.093 4 C 0.082 3.918 5 N -0.486 5.486 6 C 0.078 3.922 7 C -0.114 4.114 8 C -0.130 4.130 9 C 0.390 3.610 10 O -0.443 6.443 11 C -0.233 4.233 12 C -0.002 4.002 13 C -0.046 4.046 14 C -0.156 4.156 15 C -0.089 4.089 16 C -0.229 4.229 17 C 0.114 3.886 18 O -0.248 6.248 19 C -0.391 4.391 20 H 0.079 0.921 21 C 0.015 3.985 22 N -0.924 5.924 23 Si 0.957 3.043 24 H -0.264 1.264 25 H -0.266 1.266 26 H -0.267 1.267 27 C -0.120 4.120 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.196 0.804 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.184 0.816 38 H 0.157 0.843 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.283 0.717 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.205 17.043 1.724 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 C -0.095 4.095 4 C -0.074 4.074 5 N -0.195 5.195 6 C -0.078 4.078 7 C -0.133 4.133 8 C -0.138 4.138 9 C 0.271 3.729 10 O -0.320 6.320 11 C -0.251 4.251 12 C -0.020 4.020 13 C -0.046 4.046 14 C -0.174 4.174 15 C -0.107 4.107 16 C -0.248 4.248 17 C 0.065 3.935 18 O -0.156 6.156 19 C -0.467 4.467 20 H 0.097 0.903 21 C -0.183 4.183 22 N -0.566 5.566 23 Si 0.780 3.220 24 H -0.189 1.189 25 H -0.191 1.191 26 H -0.192 1.192 27 C -0.140 4.140 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.187 0.813 34 H 0.212 0.788 35 H 0.201 0.799 36 H 0.201 0.799 37 H 0.201 0.799 38 H 0.175 0.825 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.951 16.855 0.687 24.633 hybrid contribution -1.175 -1.036 0.027 1.567 sum 16.775 15.819 0.714 23.069 Atomic orbital electron populations 1.21501 0.95527 1.00972 1.00661 1.20635 0.95207 0.92406 1.04007 1.21255 0.96788 0.97411 0.94027 1.22859 0.95800 0.91141 0.97593 1.67600 1.11458 1.07401 1.33082 1.23394 0.96261 1.01161 0.86990 1.22808 0.95593 0.93221 1.01671 1.21059 1.01682 0.96431 0.94667 1.21090 0.74684 0.87478 0.89612 1.90838 1.32591 1.19620 1.88917 1.23643 1.07498 1.02676 0.91289 1.22964 0.88852 0.90269 0.99928 1.18956 0.94601 0.96287 0.94769 1.21286 1.01755 0.93670 1.00675 1.21021 0.93772 0.98703 0.97224 1.21412 1.03013 1.00279 1.00129 1.19386 0.88530 0.95347 0.90192 1.83525 1.42317 1.35842 1.53935 1.20656 1.18132 0.91153 1.16779 0.90340 1.25118 0.95349 0.98765 0.99086 1.69717 1.25864 1.23963 1.37039 0.85421 0.78058 0.79465 0.79076 1.18903 1.19090 1.19177 1.20160 0.97008 0.96354 1.00432 0.94675 0.92422 0.94203 0.89864 0.89745 0.81345 0.78755 0.79896 0.79890 0.79853 0.82520 0.84215 0.87794 0.90717 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.57 71.98 0.69 -4.05 16 2 C -0.08 -2.59 5.35 29.85 0.16 -2.43 16 3 C -0.09 -2.45 5.19 -19.50 -0.10 -2.55 16 4 C 0.08 1.94 10.84 84.67 0.92 2.86 16 5 N -0.49 -10.80 10.34 -196.04 -2.03 -12.82 16 6 C 0.08 1.26 11.17 84.66 0.95 2.20 16 7 C -0.11 -1.76 9.53 22.63 0.22 -1.54 16 8 C -0.13 -3.08 5.91 -19.85 -0.12 -3.19 16 9 C 0.39 10.36 6.10 26.96 0.16 10.52 16 10 O -0.44 -15.75 8.10 -4.31 -0.03 -15.78 16 11 C -0.23 -4.13 9.41 23.61 0.22 -3.91 16 12 C 0.00 -0.04 9.82 23.88 0.23 0.19 16 13 C -0.05 -1.41 4.55 -20.16 -0.09 -1.51 16 14 C -0.16 -4.56 9.79 22.61 0.22 -4.34 16 15 C -0.09 -3.14 10.02 22.21 0.22 -2.92 16 16 C -0.23 -10.53 9.17 22.47 0.21 -10.33 16 17 C 0.11 5.60 6.64 22.53 0.15 5.74 16 18 O -0.25 -14.12 8.58 -22.93 -0.20 -14.32 16 19 C -0.39 -23.90 9.95 67.92 0.68 -23.22 16 20 H 0.08 5.03 5.42 -2.91 -0.02 5.02 16 21 C 0.01 0.89 5.49 84.84 0.47 1.35 16 22 N -0.92 -56.86 13.96 21.61 0.30 -56.56 16 23 Si 0.96 47.54 28.62 68.60 1.96 49.51 16 24 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 27 C -0.12 -4.88 6.54 22.72 0.15 -4.73 16 28 H 0.03 1.44 7.27 -2.39 -0.02 1.42 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 2.91 5.67 -2.39 -0.01 2.90 16 32 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 33 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.18 1.18 6.38 -2.91 -0.02 1.16 16 36 H 0.18 1.37 6.45 -2.91 -0.02 1.35 16 37 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.10 5.26 5.62 -2.91 -0.02 5.24 16 41 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.10 4.11 7.00 -2.91 -0.02 4.09 16 Total: -1.00 -78.61 352.71 6.39 -72.22 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.05 Total: 19.60 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 5.33 Total: -41.85 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.72 Total: -69.38 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.23 Total: -30.10 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.96 Total: 49.51 kcal Total: -78.61 6.39 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776189637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.521 kcal (2) G-P(sol) polarization free energy of solvation -78.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds