Wall clock time and date at job start Tue Mar 31 2020 13:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46859 * 2 1 4 4 C 1.38134 * 120.49905 * 264.72311 * 3 2 1 5 5 N 1.31822 * 120.89777 * 179.70227 * 4 3 2 6 6 C 1.31845 * 122.05606 * 0.58932 * 5 4 3 7 7 C 1.38093 * 120.90000 * 359.69946 * 6 5 4 8 8 C 1.39841 * 120.50420 * 84.99985 * 3 2 1 9 9 C 1.48177 * 120.92623 * 0.02562 * 8 3 2 10 10 O 1.21690 * 120.00073 * 0.02562 * 9 8 3 11 11 C 1.46118 * 119.99960 * 180.02562 * 9 8 3 12 12 C 1.35159 * 119.99948 * 180.02562 * 11 9 8 13 13 C 1.47082 * 120.00041 * 179.97438 * 12 11 9 14 14 C 1.39984 * 120.14456 * 359.97438 * 13 12 11 15 15 C 1.37910 * 119.96003 * 180.02562 * 14 13 12 16 16 C 1.38311 * 120.24787 * 359.97438 * 15 14 13 17 17 C 1.39025 * 120.29563 * 0.02562 * 16 15 14 18 18 O 1.35753 * 119.97971 * 180.02562 * 17 16 15 19 19 C 1.34837 * 116.99953 * 174.48017 * 18 17 16 20 20 H 1.07994 * 119.99860 * 5.08121 * 19 18 17 21 21 C 1.38657 * 119.99666 * 185.07936 * 19 18 17 22 22 N 1.31550 * 120.00699 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99447 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46852 * 60.00053 * 23 21 19 25 25 H 1.48501 * 109.46660 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46763 * 299.99985 * 23 21 19 27 27 C 1.38537 * 120.03471 * 359.72494 * 17 16 15 28 28 H 1.08997 * 109.47376 * 60.00143 * 1 2 3 29 29 H 1.08998 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47452 * 300.00149 * 1 2 3 31 31 H 1.08997 * 109.47112 * 119.99375 * 2 1 3 32 32 H 1.08996 * 109.47361 * 240.00016 * 2 1 3 33 33 H 1.08007 * 119.55250 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.55110 * 179.72441 * 6 5 4 35 35 H 1.07998 * 120.50043 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.00152 * 359.97438 * 11 9 8 37 37 H 1.08003 * 119.99900 * 359.97438 * 12 11 9 38 38 H 1.07997 * 120.02464 * 359.97438 * 14 13 12 39 39 H 1.07992 * 119.87329 * 179.97438 * 15 14 13 40 40 H 1.07999 * 119.84732 * 180.02562 * 16 15 14 41 41 H 0.97001 * 120.00285 * 179.97438 * 22 21 19 42 42 H 1.08004 * 120.12689 * 180.27287 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3691 2.0454 -1.1852 5 7 2.8037 3.2898 -1.1949 6 6 2.9481 3.9893 -0.0866 7 6 2.6403 3.4413 1.1430 8 6 2.1698 2.1251 1.2003 9 6 1.8272 1.4946 2.4967 10 8 1.4202 0.3482 2.5271 11 6 1.9782 2.2494 3.7387 12 6 1.6662 1.6742 4.9213 13 6 1.8187 2.4337 6.1715 14 6 2.2872 3.7525 6.1402 15 6 2.4292 4.4610 7.3148 16 6 2.1098 3.8738 8.5257 17 6 1.6436 2.5647 8.5690 18 8 1.3316 1.9948 9.7609 19 6 0.7779 0.7659 9.7256 20 1 0.6771 0.2460 8.7844 21 6 0.3381 0.1697 10.8976 22 7 0.4605 0.8032 12.0440 23 14 -0.4295 -1.5327 10.8485 24 1 0.5517 -2.5023 10.2989 25 1 -0.8141 -1.9420 12.2232 26 1 -1.6368 -1.5064 9.9843 27 6 1.4915 1.8437 7.3958 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 2.2709 1.5082 -2.1170 34 1 3.3117 5.0047 -0.1412 35 1 2.7607 4.0202 2.0468 36 1 2.3398 3.2668 3.7118 37 1 1.3049 0.6567 4.9482 38 1 2.5381 4.2146 5.1969 39 1 2.7911 5.4781 7.2891 40 1 2.2231 4.4347 9.4416 41 1 0.1525 0.3862 12.8639 42 1 1.1253 0.8281 7.4274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776189638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:05 Heat of formation + Delta-G solvation = 11.658394 kcal Electronic energy + Delta-G solvation = -25051.611155 eV Core-core repulsion = 21348.905276 eV Total energy + Delta-G solvation = -3702.705879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95309 -39.30063 -38.87657 -36.82631 -34.79366 -33.70701 -32.70851 -32.26528 -30.07738 -29.80809 -28.74296 -26.02347 -25.33454 -24.38381 -23.58154 -21.83350 -21.69439 -20.77746 -19.14158 -17.94691 -17.71057 -16.93386 -16.69096 -15.76026 -15.44795 -15.32812 -14.93888 -14.77014 -14.49095 -14.17032 -14.08299 -14.02293 -13.83616 -13.73795 -13.62883 -12.96853 -12.81568 -12.51485 -12.33545 -12.07324 -11.81371 -11.72077 -11.44913 -11.20524 -11.05854 -10.92971 -10.77980 -10.51931 -10.32037 -10.07248 -9.92382 -9.56974 -9.39225 -9.24572 -8.92143 -8.01580 -7.41363 -6.54308 -4.14675 0.12335 0.78536 0.96560 2.12394 2.31225 3.04816 3.08944 3.12086 3.12576 3.59044 3.74065 3.89193 4.09716 4.38734 4.44390 4.50391 4.61802 4.89230 4.92684 4.98544 5.07629 5.12572 5.14663 5.21032 5.30182 5.35689 5.53053 5.55597 5.56857 5.62552 5.67875 5.80942 5.91303 5.97340 6.06794 6.17239 6.23430 6.31321 6.34431 6.55068 6.63292 6.91089 7.03186 7.13596 7.25101 7.42878 7.57265 7.59910 7.88495 8.90667 9.56931 10.63036 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.002563 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.267028 B =10922.046125 C =12527.836674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.078 4.078 4 C 0.089 3.911 5 N -0.467 5.467 6 C 0.080 3.920 7 C -0.123 4.123 8 C -0.111 4.111 9 C 0.425 3.575 10 O -0.450 6.450 11 C -0.269 4.269 12 C 0.027 3.973 13 C -0.055 4.055 14 C -0.183 4.183 15 C -0.083 4.083 16 C -0.171 4.171 17 C 0.145 3.855 18 O -0.174 6.174 19 C -0.397 4.397 20 H 0.092 0.908 21 C 0.042 3.958 22 N -0.860 5.860 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.198 4.198 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.272 0.728 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 3.399 -21.392 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.081 4.081 4 C -0.069 4.069 5 N -0.175 5.175 6 C -0.076 4.076 7 C -0.143 4.143 8 C -0.120 4.120 9 C 0.307 3.693 10 O -0.328 6.328 11 C -0.288 4.288 12 C 0.008 3.992 13 C -0.055 4.055 14 C -0.202 4.202 15 C -0.102 4.102 16 C -0.190 4.190 17 C 0.091 3.909 18 O -0.077 6.077 19 C -0.473 4.473 20 H 0.109 0.891 21 C -0.163 4.163 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.218 4.218 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.082 0.918 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.093 3.228 -21.657 22.114 hybrid contribution -0.507 -0.995 0.765 1.354 sum 2.586 2.233 -20.892 21.170 Atomic orbital electron populations 1.21600 0.94072 1.02085 1.01600 1.20814 0.96899 0.91246 1.04357 1.21260 0.96048 0.97858 0.92889 1.22707 0.95888 0.90881 0.97391 1.67549 1.10756 1.07449 1.31794 1.22759 0.97289 1.00086 0.87441 1.22507 0.96905 0.94626 1.00267 1.20806 1.00952 0.95127 0.95084 1.20335 0.74289 0.86559 0.88088 1.90580 1.35069 1.18115 1.89029 1.23160 1.10916 1.02218 0.92474 1.22782 0.86729 0.98361 0.91325 1.18683 1.01049 0.94064 0.91741 1.20835 1.07356 0.94345 0.97666 1.20607 0.98967 0.98844 0.91751 1.20453 1.06735 0.93539 0.98304 1.19257 0.93370 0.91941 0.86305 1.84003 1.68363 1.31712 1.23610 1.21271 1.39754 0.90556 0.95683 0.89073 1.25291 0.96795 1.00011 0.94187 1.70016 1.43209 1.37881 0.98278 0.85788 0.79498 0.80204 0.78052 1.19369 1.20169 1.19373 1.21437 1.07458 1.01567 0.91293 0.93246 0.92049 0.92408 0.87754 0.91254 0.82424 0.82179 0.83639 0.84840 0.85203 0.86949 0.86476 0.86138 0.91803 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.57 37.16 0.36 -0.95 16 2 C -0.10 -0.93 5.35 -27.88 -0.15 -1.08 16 3 C -0.08 -0.81 5.19 -104.06 -0.54 -1.35 16 4 C 0.09 0.85 10.84 -17.59 -0.19 0.66 16 5 N -0.47 -4.86 10.34 -13.31 -0.14 -4.99 16 6 C 0.08 0.71 11.17 -17.60 -0.20 0.51 16 7 C -0.12 -1.11 9.53 -39.02 -0.37 -1.48 16 8 C -0.11 -1.22 5.91 -104.60 -0.62 -1.84 16 9 C 0.42 5.35 7.05 -32.34 -0.23 5.12 16 10 O -0.45 -6.49 12.19 5.20 0.06 -6.42 16 11 C -0.27 -3.34 8.93 -37.52 -0.33 -3.67 16 12 C 0.03 0.39 9.46 -37.09 -0.35 0.04 16 13 C -0.06 -0.94 5.87 -105.08 -0.62 -1.56 16 14 C -0.18 -2.82 9.41 -39.05 -0.37 -3.19 16 15 C -0.08 -1.34 10.02 -39.67 -0.40 -1.73 16 16 C -0.17 -3.34 9.99 -39.26 -0.39 -3.73 16 17 C 0.15 3.31 6.64 -39.18 -0.26 3.05 16 18 O -0.17 -4.75 9.76 0.02 0.00 -4.75 16 19 C -0.40 -10.70 9.48 30.89 0.29 -10.41 16 20 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 21 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 22 N -0.86 -24.54 13.67 55.48 0.76 -23.78 16 23 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.20 -4.05 8.91 -38.89 -0.35 -4.40 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 7.27 -51.93 -0.38 0.28 16 31 H 0.10 1.21 5.67 -51.93 -0.29 0.91 16 32 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.15 0.99 6.37 -52.49 -0.33 0.65 16 36 H 0.13 1.36 4.43 -52.48 -0.23 1.13 16 37 H 0.13 1.91 7.52 -52.48 -0.39 1.52 16 38 H 0.11 1.36 6.16 -52.49 -0.32 1.04 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.13 2.73 5.63 -52.48 -0.30 2.43 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -30.78 358.78 -8.36 -39.13 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.61 Total: 5.40 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -4.81 Total: -24.99 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.62 Total: -28.77 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.06 Total: -11.17 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.78 -8.36 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776189638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.791 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds