Wall clock time and date at job start Tue Mar 31 2020 14:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46996 * 2 1 4 4 C 1.52999 * 109.46984 * 120.00370 * 2 1 3 5 5 H 1.08997 * 109.46988 * 305.35588 * 4 2 1 6 6 F 1.39906 * 109.46709 * 185.35463 * 4 2 1 7 7 C 1.50697 * 109.47134 * 65.35907 * 4 2 1 8 8 O 1.20831 * 120.00205 * 47.27770 * 7 4 2 9 9 O 1.34233 * 120.00014 * 227.27791 * 7 4 2 10 10 C 1.45199 * 117.00273 * 185.08669 * 9 7 4 11 11 C 1.50694 * 109.47000 * 184.91273 * 10 9 7 12 12 O 1.21276 * 120.00295 * 4.97785 * 11 10 9 13 13 N 1.34778 * 119.99912 * 184.98725 * 11 10 9 14 14 C 1.37145 * 120.00003 * 3.55871 * 13 11 10 15 15 H 1.08000 * 119.99664 * 308.58005 * 14 13 11 16 16 C 1.38889 * 119.99732 * 128.58328 * 14 13 11 17 17 N 1.31417 * 119.99443 * 172.87490 * 16 14 13 18 18 Si 1.86797 * 120.00050 * 352.86984 * 16 14 13 19 19 H 1.48501 * 109.47037 * 95.38036 * 18 16 14 20 20 H 1.48501 * 109.46982 * 215.37780 * 18 16 14 21 21 H 1.48494 * 109.47484 * 335.37456 * 18 16 14 22 22 C 1.39789 * 119.99951 * 183.56727 * 13 11 10 23 23 C 1.38968 * 120.07734 * 171.54503 * 22 13 11 24 24 C 1.38083 * 119.91928 * 180.22754 * 23 22 13 25 25 C 1.38306 * 120.08107 * 359.47052 * 24 23 22 26 26 C 1.38308 * 120.15163 * 0.55161 * 25 24 23 27 27 C 1.38088 * 120.08198 * 359.70380 * 26 25 24 28 28 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47530 * 299.99625 * 1 2 3 30 30 H 1.09004 * 109.47068 * 59.99698 * 1 2 3 31 31 H 1.09005 * 109.46871 * 240.00076 * 2 1 3 32 32 H 1.09006 * 109.46888 * 185.00625 * 3 2 1 33 33 H 1.08997 * 109.47602 * 305.00788 * 3 2 1 34 34 H 1.09000 * 109.46895 * 65.01312 * 3 2 1 35 35 H 1.08996 * 109.47287 * 64.90649 * 10 9 7 36 36 H 1.09003 * 109.46666 * 304.90538 * 10 9 7 37 37 H 0.97003 * 119.99976 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.03450 * 359.95272 * 23 22 13 39 39 H 1.08005 * 119.95413 * 179.74184 * 24 23 22 40 40 H 1.07995 * 119.92665 * 180.25613 * 25 24 23 41 41 H 1.08008 * 119.96264 * 179.72327 * 26 25 24 42 42 H 1.08003 * 120.03983 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6004 -0.2659 2.1366 6 9 3.4336 -0.6157 1.3124 7 6 1.6489 -2.1752 1.1845 8 8 1.8348 -2.8064 0.1711 9 8 1.0940 -2.7692 2.2528 10 6 0.8471 -4.1969 2.1592 11 6 0.1169 -4.6624 3.3925 12 8 -0.2472 -3.8562 4.2221 13 7 -0.1314 -5.9746 3.5736 14 6 0.3438 -6.8932 2.6728 15 1 0.1557 -6.7617 1.6175 16 6 1.0668 -7.9924 3.1179 17 7 1.4015 -8.9435 2.2751 18 14 1.5635 -8.1186 4.9142 19 1 0.5637 -8.9354 5.6480 20 1 2.8981 -8.7619 5.0147 21 1 1.6235 -6.7588 5.5079 22 6 -0.8734 -6.3994 4.6795 23 6 -1.2805 -7.7245 4.7777 24 6 -2.0174 -8.1395 5.8693 25 6 -2.3410 -7.2408 6.8695 26 6 -1.9378 -5.9211 6.7748 27 6 -1.2052 -5.4979 5.6835 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1263 1.4438 -0.0897 33 1 1.6053 1.9816 -0.8417 34 1 1.7518 1.9297 0.9315 35 1 1.7970 -4.7254 2.0781 36 1 0.2400 -4.4036 1.2778 37 1 1.9068 -9.7111 2.5858 38 1 -1.0247 -8.4278 3.9990 39 1 -2.3377 -9.1683 5.9441 40 1 -2.9139 -7.5690 7.7241 41 1 -2.1960 -5.2209 7.5555 42 1 -0.8903 -4.4673 5.6105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784303935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:39 Heat of formation + Delta-G solvation = -137.130765 kcal Electronic energy + Delta-G solvation = -27615.861271 eV Core-core repulsion = 23475.934185 eV Total energy + Delta-G solvation = -4139.927086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.17645 -42.14312 -41.49294 -39.29479 -37.86813 -37.03812 -36.59620 -34.28265 -31.82821 -31.68254 -30.03507 -28.47040 -27.98677 -27.20395 -23.97611 -23.22281 -22.81667 -21.46251 -21.24976 -20.08669 -19.56207 -18.32447 -18.15479 -17.89953 -17.67198 -17.18752 -17.08614 -16.55292 -16.24166 -15.99225 -15.56483 -15.28219 -15.02582 -14.78029 -14.74860 -14.43081 -14.19435 -14.13912 -13.83381 -13.78455 -13.67513 -13.36471 -13.20084 -13.03652 -12.71444 -12.52213 -12.23119 -12.14833 -12.11265 -12.05121 -11.91893 -11.71312 -11.61165 -11.40962 -10.90898 -10.27012 -9.68140 -8.94908 -8.62726 -6.59400 0.33995 0.52518 0.68519 1.00651 1.20491 1.26671 1.35499 1.59163 2.07852 2.32431 2.66615 3.05620 3.10278 3.31895 3.52763 3.54097 3.69162 3.97122 4.07401 4.11092 4.16486 4.18952 4.33386 4.44784 4.46767 4.65009 4.74356 4.75779 4.79531 4.81860 4.93910 5.02912 5.09815 5.19656 5.27293 5.34740 5.42057 5.52785 5.63063 5.70035 5.88196 5.93223 6.27257 6.33736 6.70759 7.04880 7.33565 8.41129 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.003562 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.347933 B = 7858.506637 C = 8721.911674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.117 3.883 5 H 0.145 0.855 6 F -0.189 7.189 7 C 0.437 3.563 8 O -0.511 6.511 9 O -0.336 6.336 10 C 0.076 3.924 11 C 0.493 3.507 12 O -0.551 6.551 13 N -0.411 5.411 14 C -0.376 4.376 15 H 0.093 0.907 16 C 0.062 3.938 17 N -0.881 5.881 18 Si 0.912 3.088 19 H -0.233 1.233 20 H -0.285 1.285 21 H -0.280 1.280 22 C 0.122 3.878 23 C -0.171 4.171 24 C -0.107 4.107 25 C -0.152 4.152 26 C -0.105 4.105 27 C -0.200 4.200 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.287 0.713 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 13.799 1.734 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.198 4.198 4 C 0.080 3.920 5 H 0.163 0.837 6 F -0.169 7.169 7 C 0.279 3.721 8 O -0.398 6.398 9 O -0.251 6.251 10 C 0.000 4.000 11 C 0.284 3.716 12 O -0.434 6.434 13 N -0.122 5.122 14 C -0.503 4.503 15 H 0.111 0.889 16 C -0.146 4.146 17 N -0.515 5.515 18 Si 0.737 3.263 19 H -0.156 1.156 20 H -0.211 1.211 21 H -0.205 1.205 22 C 0.028 3.972 23 C -0.192 4.192 24 C -0.126 4.126 25 C -0.171 4.171 26 C -0.123 4.123 27 C -0.220 4.220 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.173 0.827 41 H 0.167 0.833 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.830 13.798 1.707 14.188 hybrid contribution 0.711 -1.089 0.040 1.301 sum -2.119 12.709 1.748 13.002 Atomic orbital electron populations 1.21873 0.92433 1.01731 1.04812 1.21725 0.98139 0.98483 0.94788 1.21804 1.01637 0.92152 1.04232 1.21636 0.77424 0.87015 1.05923 0.83711 1.92890 1.29949 1.96097 1.97987 1.24937 0.74198 0.92159 0.80841 1.90691 1.49979 1.66635 1.32486 1.86493 1.72588 1.24328 1.41680 1.22452 1.02663 0.77483 0.97430 1.20472 0.80757 0.82528 0.87850 1.90248 1.54009 1.54506 1.44647 1.41272 1.44011 1.05384 1.21554 1.18938 1.35943 1.05340 0.90044 0.88932 1.25808 0.93265 0.94525 1.01001 1.69700 1.35832 1.08999 1.36982 0.86345 0.78643 0.79572 0.81715 1.15647 1.21133 1.20513 1.18706 0.94571 0.94603 0.89347 1.21093 1.02360 0.94840 1.00887 1.21256 0.97210 1.00868 0.93220 1.21446 1.02384 0.93222 1.00017 1.21449 0.96861 0.96801 0.97190 1.22774 1.02117 1.02919 0.94179 0.94666 0.90072 0.89329 0.90068 0.92161 0.89774 0.90588 0.87803 0.87628 0.90295 0.86221 0.83804 0.82692 0.83261 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.01 71.98 0.65 -1.88 16 2 C -0.11 -2.08 2.63 -10.79 -0.03 -2.11 16 3 C -0.14 -1.81 8.94 71.98 0.64 -1.16 16 4 C 0.12 2.73 3.41 29.85 0.10 2.83 16 5 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 6 F -0.19 -4.90 16.44 44.97 0.74 -4.16 16 7 C 0.44 14.17 6.26 71.24 0.45 14.61 16 8 O -0.51 -19.16 16.13 21.95 0.35 -18.80 16 9 O -0.34 -12.30 9.76 -45.10 -0.44 -12.74 16 10 C 0.08 3.10 4.85 71.23 0.35 3.45 16 11 C 0.49 22.72 7.65 87.65 0.67 23.39 16 12 O -0.55 -25.94 12.92 15.73 0.20 -25.74 16 13 N -0.41 -20.00 2.27 -458.90 -1.04 -21.04 16 14 C -0.38 -19.42 7.98 84.02 0.67 -18.75 16 15 H 0.09 5.02 7.89 -2.91 -0.02 5.00 16 16 C 0.06 3.24 4.28 84.91 0.36 3.60 16 17 N -0.88 -47.34 13.96 21.65 0.30 -47.04 16 18 Si 0.91 42.53 24.14 68.60 1.66 44.18 16 19 H -0.23 -10.09 6.03 99.48 0.60 -9.49 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.28 -13.94 6.90 99.48 0.69 -13.26 16 22 C 0.12 5.66 4.39 38.22 0.17 5.83 16 23 C -0.17 -7.41 5.76 22.41 0.13 -7.28 16 24 C -0.11 -3.73 9.76 22.25 0.22 -3.51 16 25 C -0.15 -4.63 10.04 22.30 0.22 -4.41 16 26 C -0.10 -3.50 10.04 22.25 0.22 -3.28 16 27 C -0.20 -8.45 9.03 22.41 0.20 -8.25 16 28 H 0.03 0.76 7.39 -2.39 -0.02 0.74 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 31 H 0.08 1.76 7.76 -2.38 -0.02 1.74 16 32 H 0.06 0.84 7.84 -2.38 -0.02 0.82 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 4.36 7.90 -2.39 -0.02 4.34 16 36 H 0.11 4.17 7.94 -2.39 -0.02 4.15 16 37 H 0.29 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.12 5.62 5.68 -2.91 -0.02 5.61 16 39 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.17 7.36 4.58 -58.26 -0.27 7.10 16 Total: -1.00 -64.06 349.88 7.46 -56.60 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.66 Total: 25.66 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.03 Total: 3.07 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.74 Total: -68.08 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: 0.12 Total: -57.28 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.74 Total: -4.16 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.66 Total: 44.18 kcal Total: -64.06 7.46 -56.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784303935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.529 kcal (2) G-P(sol) polarization free energy of solvation -64.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds