Wall clock time and date at job start Tue Mar 31 2020 14:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46706 * 2 1 4 4 C 1.52997 * 109.46967 * 119.99743 * 2 1 3 5 5 H 1.08995 * 109.47411 * 184.99985 * 4 2 1 6 6 F 1.39903 * 109.47562 * 305.00327 * 4 2 1 7 7 C 1.50703 * 109.46940 * 65.00377 * 4 2 1 8 8 O 1.20828 * 120.00266 * 314.99705 * 7 4 2 9 9 O 1.34233 * 119.99896 * 135.00056 * 7 4 2 10 10 C 1.45200 * 116.99875 * 179.97438 * 9 7 4 11 11 C 1.50699 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00172 * 4.97638 * 11 10 9 13 13 N 1.34780 * 119.99451 * 184.97685 * 11 10 9 14 14 C 1.37136 * 120.00595 * 4.58657 * 13 11 10 15 15 H 1.08005 * 119.99474 * 311.70752 * 14 13 11 16 16 C 1.38881 * 120.00187 * 131.70578 * 14 13 11 17 17 N 1.31422 * 120.00056 * 352.02591 * 16 14 13 18 18 Si 1.86799 * 120.00267 * 172.02438 * 16 14 13 19 19 H 1.48500 * 109.47129 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47027 * 120.00094 * 18 16 14 21 21 H 1.48499 * 109.47455 * 239.99879 * 18 16 14 22 22 C 1.39793 * 119.99556 * 184.59030 * 13 11 10 23 23 C 1.38958 * 120.08020 * 172.06606 * 22 13 11 24 24 C 1.38081 * 119.92495 * 180.22758 * 23 22 13 25 25 C 1.38311 * 120.07481 * 359.47250 * 24 23 22 26 26 C 1.38303 * 120.15666 * 0.55197 * 25 24 23 27 27 C 1.38090 * 120.07778 * 359.70074 * 26 25 24 28 28 H 1.09000 * 109.47806 * 300.00060 * 1 2 3 29 29 H 1.09008 * 109.46958 * 60.00393 * 1 2 3 30 30 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47296 * 239.99834 * 2 1 3 32 32 H 1.09001 * 109.47379 * 59.99885 * 3 2 1 33 33 H 1.09006 * 109.46790 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47632 * 299.99733 * 3 2 1 35 35 H 1.09002 * 109.47027 * 59.99589 * 10 9 7 36 36 H 1.09004 * 109.47390 * 300.00083 * 10 9 7 37 37 H 0.96995 * 120.00400 * 185.00831 * 17 16 14 38 38 H 1.08006 * 120.03574 * 359.94879 * 23 22 13 39 39 H 1.07997 * 119.96211 * 179.74161 * 24 23 22 40 40 H 1.07998 * 119.91774 * 180.25411 * 25 24 23 41 41 H 1.08004 * 119.96198 * 179.72443 * 26 25 24 42 42 H 1.08002 * 120.03587 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2952 6 9 1.4821 -0.1315 2.3887 7 6 1.6413 -2.1733 1.1889 8 8 0.5185 -2.4785 0.8633 9 8 2.5337 -3.1276 1.4968 10 6 2.0800 -4.5046 1.4174 11 6 3.2095 -5.4281 1.7947 12 8 4.2618 -4.9704 2.1871 13 7 3.0501 -6.7628 1.6961 14 6 1.8959 -7.2783 1.1644 15 1 0.9365 -6.9173 1.5045 16 6 1.9607 -8.2643 0.1885 17 7 3.1192 -8.5927 -0.3380 18 14 0.4012 -9.1240 -0.3757 19 1 -0.7624 -8.5756 0.3661 20 1 0.2107 -8.8987 -1.8311 21 1 0.5156 -10.5808 -0.1112 22 6 4.0615 -7.6218 2.1360 23 6 3.8371 -8.9921 2.1894 24 6 4.8367 -9.8372 2.6289 25 6 6.0640 -9.3223 3.0053 26 6 6.2907 -7.9590 2.9539 27 6 5.2938 -7.1074 2.5203 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.7574 -4.7227 0.3993 36 1 1.2451 -4.6523 2.1025 37 1 3.1568 -9.2283 -1.0697 38 1 2.8803 -9.3953 1.8918 39 1 4.6615 -10.9019 2.6746 40 1 6.8454 -9.9860 3.3447 41 1 7.2488 -7.5598 3.2528 42 1 5.4718 -6.0429 2.4800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784303936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:43 Heat of formation + Delta-G solvation = -121.884884 kcal Electronic energy + Delta-G solvation = -27497.287363 eV Core-core repulsion = 23358.021388 eV Total energy + Delta-G solvation = -4139.265975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.12660 -40.48769 -39.65941 -37.41051 -36.48044 -35.36964 -35.11871 -32.06114 -30.08077 -29.63968 -28.67875 -27.33051 -26.91821 -25.29250 -22.30142 -21.56186 -21.14752 -20.28224 -19.64203 -18.13686 -18.06246 -17.13569 -16.61814 -16.20171 -15.92296 -15.68453 -15.40377 -15.18819 -14.66501 -14.26059 -14.05229 -13.86815 -13.45885 -13.16341 -13.13810 -12.99195 -12.68720 -12.63226 -12.30110 -12.25460 -12.06245 -11.82980 -11.57508 -11.45633 -11.39076 -11.17140 -11.10260 -10.95073 -10.87686 -10.51620 -10.47353 -10.09842 -9.97603 -9.45841 -8.88019 -8.29171 -7.81835 -6.98275 -6.45706 -4.59810 2.01519 2.32878 2.40115 2.54231 2.96270 3.07016 3.10435 3.55391 3.84694 4.07771 4.16683 4.47434 4.53836 4.65308 4.79311 4.98585 5.08568 5.14417 5.27588 5.43227 5.47788 5.60870 5.64982 5.73807 5.78935 5.81026 5.85415 5.99100 6.03165 6.13510 6.19800 6.61536 6.65257 6.68985 6.82606 7.06153 7.15191 7.45100 7.56344 7.58136 7.65346 7.71115 7.95707 8.34390 8.70620 9.06209 9.42664 10.36918 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003604 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.651043 B = 7766.348474 C = 9261.000718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.115 3.885 5 H 0.118 0.882 6 F -0.182 7.182 7 C 0.439 3.561 8 O -0.483 6.483 9 O -0.328 6.328 10 C 0.069 3.931 11 C 0.489 3.511 12 O -0.547 6.547 13 N -0.376 5.376 14 C -0.382 4.382 15 H 0.098 0.902 16 C 0.057 3.943 17 N -0.835 5.835 18 Si 0.919 3.081 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.274 1.274 22 C 0.189 3.811 23 C -0.094 4.094 24 C -0.123 4.123 25 C -0.170 4.170 26 C -0.121 4.121 27 C -0.186 4.186 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.277 0.723 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 10.442 0.002 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.132 4.132 3 C -0.205 4.205 4 C 0.077 3.923 5 H 0.135 0.865 6 F -0.163 7.163 7 C 0.279 3.721 8 O -0.370 6.370 9 O -0.243 6.243 10 C -0.007 4.007 11 C 0.279 3.721 12 O -0.430 6.430 13 N -0.085 5.085 14 C -0.508 4.508 15 H 0.116 0.884 16 C -0.154 4.154 17 N -0.466 5.466 18 Si 0.744 3.256 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.200 1.200 22 C 0.092 3.908 23 C -0.115 4.115 24 C -0.142 4.142 25 C -0.190 4.190 26 C -0.139 4.139 27 C -0.206 4.206 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.879 10.423 -0.018 10.591 hybrid contribution -0.875 -0.889 -0.524 1.353 sum -2.753 9.534 -0.543 9.938 Atomic orbital electron populations 1.22163 0.93088 1.05357 1.01911 1.21640 0.98718 0.97187 0.95610 1.21841 1.01291 0.94409 1.02923 1.21223 1.00740 0.85365 0.84943 0.86457 1.92884 1.87603 1.83891 1.51918 1.24029 0.83957 0.89523 0.74571 1.90595 1.21096 1.83310 1.42041 1.86503 1.42562 1.16836 1.78369 1.22711 0.96826 0.76143 1.05045 1.20082 0.87785 0.83345 0.80843 1.90256 1.27312 1.76150 1.49268 1.40860 1.15607 1.02126 1.49875 1.19507 0.84791 1.24493 1.22058 0.88438 1.25569 0.97992 0.96869 0.94991 1.69990 1.24318 1.30805 1.21520 0.85981 0.81236 0.79435 0.78975 1.18689 1.20112 1.19969 1.18037 0.88489 0.90261 0.94002 1.20781 0.99859 0.91770 0.99090 1.20720 0.93903 0.98296 1.01301 1.20782 0.97194 0.95244 1.05734 1.20847 0.98286 0.93298 1.01507 1.22650 0.91972 1.03779 1.02159 0.92252 0.92418 0.88957 0.88831 0.91793 0.92034 0.91530 0.87388 0.88608 0.91261 0.85761 0.87765 0.88135 0.87653 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.71 37.16 0.32 -1.51 16 2 C -0.11 -1.13 2.75 -90.62 -0.25 -1.38 16 3 C -0.15 -1.15 9.11 37.16 0.34 -0.81 16 4 C 0.11 1.38 3.51 -27.88 -0.10 1.28 16 5 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 6 F -0.18 -2.39 16.03 2.25 0.04 -2.36 16 7 C 0.44 6.86 7.30 36.01 0.26 7.13 16 8 O -0.48 -8.26 13.55 -18.75 -0.25 -8.51 16 9 O -0.33 -5.96 9.76 -45.90 -0.45 -6.40 16 10 C 0.07 1.34 4.71 36.01 0.17 1.51 16 11 C 0.49 11.36 7.65 -10.98 -0.08 11.27 16 12 O -0.55 -13.44 12.92 -14.05 -0.18 -13.62 16 13 N -0.38 -9.20 2.70 -58.98 -0.16 -9.36 16 14 C -0.38 -9.07 7.65 -14.94 -0.11 -9.18 16 15 H 0.10 2.17 7.55 -52.48 -0.40 1.78 16 16 C 0.06 1.34 3.62 -17.49 -0.06 1.27 16 17 N -0.84 -21.12 11.12 55.49 0.62 -20.50 16 18 Si 0.92 18.21 29.56 -169.99 -5.03 13.18 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C 0.19 4.66 5.72 -83.69 -0.48 4.18 16 23 C -0.09 -2.21 7.56 -39.37 -0.30 -2.51 16 24 C -0.12 -2.56 10.04 -39.61 -0.40 -2.96 16 25 C -0.17 -3.36 10.04 -39.53 -0.40 -3.75 16 26 C -0.12 -2.50 10.04 -39.61 -0.40 -2.89 16 27 C -0.19 -4.40 9.04 -39.37 -0.36 -4.75 16 28 H 0.06 0.65 7.69 -51.93 -0.40 0.25 16 29 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.09 1.22 5.26 -51.93 -0.27 0.95 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.11 2.08 7.88 -51.93 -0.41 1.67 16 36 H 0.10 1.74 8.08 -51.93 -0.42 1.33 16 37 H 0.28 6.61 8.32 -40.82 -0.34 6.27 16 38 H 0.12 2.99 5.69 -52.48 -0.30 2.69 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.17 4.19 4.56 -56.09 -0.26 3.93 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -28.40 352.26 -7.33 -35.72 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.38 Total: 9.64 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.84 Total: -3.10 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 0.46 Total: -29.86 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.88 Total: -28.54 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.40 -7.33 -35.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784303936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.162 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds