Wall clock time and date at job start Tue Mar 31 2020 14:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46706 * 2 1 4 4 C 1.52997 * 109.46967 * 119.99743 * 2 1 3 5 5 H 1.08995 * 109.47411 * 184.99985 * 4 2 1 6 6 F 1.39903 * 109.47562 * 305.00327 * 4 2 1 7 7 C 1.50703 * 109.46940 * 65.00377 * 4 2 1 8 8 O 1.20828 * 120.00266 * 314.99705 * 7 4 2 9 9 O 1.34233 * 119.99896 * 135.00056 * 7 4 2 10 10 C 1.45200 * 116.99875 * 179.97438 * 9 7 4 11 11 C 1.50699 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00172 * 4.97638 * 11 10 9 13 13 N 1.34780 * 119.99451 * 184.97685 * 11 10 9 14 14 C 1.37136 * 120.00595 * 4.58657 * 13 11 10 15 15 H 1.08005 * 119.99474 * 311.70752 * 14 13 11 16 16 C 1.38881 * 120.00187 * 131.70578 * 14 13 11 17 17 N 1.31422 * 120.00056 * 352.02591 * 16 14 13 18 18 Si 1.86799 * 120.00267 * 172.02438 * 16 14 13 19 19 H 1.48500 * 109.47129 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47027 * 120.00094 * 18 16 14 21 21 H 1.48499 * 109.47455 * 239.99879 * 18 16 14 22 22 C 1.39793 * 119.99556 * 184.59030 * 13 11 10 23 23 C 1.38958 * 120.08020 * 172.06606 * 22 13 11 24 24 C 1.38081 * 119.92495 * 180.22758 * 23 22 13 25 25 C 1.38311 * 120.07481 * 359.47250 * 24 23 22 26 26 C 1.38303 * 120.15666 * 0.55197 * 25 24 23 27 27 C 1.38090 * 120.07778 * 359.70074 * 26 25 24 28 28 H 1.09000 * 109.47806 * 300.00060 * 1 2 3 29 29 H 1.09008 * 109.46958 * 60.00393 * 1 2 3 30 30 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47296 * 239.99834 * 2 1 3 32 32 H 1.09001 * 109.47379 * 59.99885 * 3 2 1 33 33 H 1.09006 * 109.46790 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47632 * 299.99733 * 3 2 1 35 35 H 1.09002 * 109.47027 * 59.99589 * 10 9 7 36 36 H 1.09004 * 109.47390 * 300.00083 * 10 9 7 37 37 H 0.96995 * 120.00400 * 185.00831 * 17 16 14 38 38 H 1.08006 * 120.03574 * 359.94879 * 23 22 13 39 39 H 1.07997 * 119.96211 * 179.74161 * 24 23 22 40 40 H 1.07998 * 119.91774 * 180.25411 * 25 24 23 41 41 H 1.08004 * 119.96198 * 179.72443 * 26 25 24 42 42 H 1.08002 * 120.03587 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2952 6 9 1.4821 -0.1315 2.3887 7 6 1.6413 -2.1733 1.1889 8 8 0.5185 -2.4785 0.8633 9 8 2.5337 -3.1276 1.4968 10 6 2.0800 -4.5046 1.4174 11 6 3.2095 -5.4281 1.7947 12 8 4.2618 -4.9704 2.1871 13 7 3.0501 -6.7628 1.6961 14 6 1.8959 -7.2783 1.1644 15 1 0.9365 -6.9173 1.5045 16 6 1.9607 -8.2643 0.1885 17 7 3.1192 -8.5927 -0.3380 18 14 0.4012 -9.1240 -0.3757 19 1 -0.7624 -8.5756 0.3661 20 1 0.2107 -8.8987 -1.8311 21 1 0.5156 -10.5808 -0.1112 22 6 4.0615 -7.6218 2.1360 23 6 3.8371 -8.9921 2.1894 24 6 4.8367 -9.8372 2.6289 25 6 6.0640 -9.3223 3.0053 26 6 6.2907 -7.9590 2.9539 27 6 5.2938 -7.1074 2.5203 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.7574 -4.7227 0.3993 36 1 1.2451 -4.6523 2.1025 37 1 3.1568 -9.2283 -1.0697 38 1 2.8803 -9.3953 1.8918 39 1 4.6615 -10.9019 2.6746 40 1 6.8454 -9.9860 3.3447 41 1 7.2488 -7.5598 3.2528 42 1 5.4718 -6.0429 2.4800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784303936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:42 Heat of formation + Delta-G solvation = -134.690629 kcal Electronic energy + Delta-G solvation = -27497.842661 eV Core-core repulsion = 23358.021388 eV Total energy + Delta-G solvation = -4139.821274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.14862 -41.95049 -41.29069 -39.04756 -37.85664 -36.91104 -36.28852 -33.88367 -31.67083 -31.32288 -29.97889 -28.34429 -28.06469 -27.10009 -23.78557 -23.09268 -22.65650 -21.45991 -21.19890 -19.76586 -19.39661 -18.35898 -17.94705 -17.83067 -17.34575 -17.12017 -16.87035 -16.64521 -16.24351 -15.80871 -15.47571 -14.89291 -14.82565 -14.70271 -14.48799 -14.22507 -14.11699 -13.92206 -13.88276 -13.53179 -13.33497 -13.15873 -13.07190 -12.94455 -12.79174 -12.49653 -12.34230 -12.09418 -11.96061 -11.92993 -11.79314 -11.75608 -11.22963 -11.12681 -10.64315 -10.07173 -9.52664 -8.77220 -8.24072 -6.45389 0.62551 0.75675 0.82211 1.07862 1.37590 1.44230 1.56176 1.83005 2.20267 2.61304 2.87464 3.18281 3.34514 3.41969 3.58477 3.70652 3.76419 4.04211 4.16480 4.18841 4.32789 4.35264 4.36030 4.50308 4.59360 4.79525 4.88444 4.92332 4.97144 4.97842 5.07663 5.10636 5.14197 5.29428 5.35897 5.41011 5.53454 5.75770 5.83312 5.87624 5.97764 6.18880 6.37356 6.58321 6.89250 7.26897 7.62935 8.58529 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003604 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.651043 B = 7766.348474 C = 9261.000718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.117 3.883 5 H 0.142 0.858 6 F -0.188 7.188 7 C 0.436 3.564 8 O -0.499 6.499 9 O -0.340 6.340 10 C 0.080 3.920 11 C 0.476 3.524 12 O -0.569 6.569 13 N -0.388 5.388 14 C -0.394 4.394 15 H 0.106 0.894 16 C 0.023 3.977 17 N -0.870 5.870 18 Si 0.983 3.017 19 H -0.255 1.255 20 H -0.276 1.276 21 H -0.273 1.273 22 C 0.157 3.843 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.162 4.162 26 C -0.120 4.120 27 C -0.212 4.212 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.277 0.723 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 10.467 -0.095 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.130 4.130 3 C -0.200 4.200 4 C 0.080 3.920 5 H 0.159 0.841 6 F -0.168 7.168 7 C 0.277 3.723 8 O -0.387 6.387 9 O -0.255 6.255 10 C 0.004 3.996 11 C 0.267 3.733 12 O -0.454 6.454 13 N -0.097 5.097 14 C -0.520 4.520 15 H 0.124 0.876 16 C -0.184 4.184 17 N -0.502 5.502 18 Si 0.805 3.195 19 H -0.178 1.178 20 H -0.201 1.201 21 H -0.198 1.198 22 C 0.061 3.939 23 C -0.133 4.133 24 C -0.143 4.143 25 C -0.181 4.181 26 C -0.139 4.139 27 C -0.231 4.231 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.622 10.463 -0.102 10.588 hybrid contribution -0.903 -0.895 -0.449 1.348 sum -2.525 9.567 -0.551 9.910 Atomic orbital electron populations 1.22120 0.93875 1.03752 1.02667 1.21725 0.98063 0.98575 0.94629 1.21829 1.02116 0.92466 1.03548 1.21523 1.02146 0.82647 0.85643 0.84067 1.92874 1.87864 1.83621 1.52475 1.24911 0.83439 0.90389 0.73574 1.90600 1.21737 1.83721 1.42626 1.86521 1.43659 1.16425 1.78919 1.22447 0.95446 0.76724 1.04959 1.20653 0.88507 0.83576 0.80537 1.90233 1.28332 1.76524 1.50267 1.41103 1.15882 1.02674 1.50024 1.19839 0.85042 1.24803 1.22301 0.87647 1.26305 1.00566 0.96911 0.94648 1.70108 1.26363 1.31578 1.22142 0.85021 0.77950 0.78196 0.78304 1.17803 1.20095 1.19778 1.18404 0.89164 0.91069 0.95246 1.20821 1.00316 0.91761 1.00446 1.21115 0.93662 0.99518 0.99988 1.21218 0.97611 0.95316 1.03906 1.21222 0.98697 0.93744 1.00211 1.22681 0.92786 1.03776 1.03872 0.92606 0.90583 0.91603 0.88162 0.92005 0.90750 0.90076 0.87493 0.87649 0.91317 0.87096 0.84879 0.83981 0.84637 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 8.71 71.98 0.63 -2.85 16 2 C -0.11 -2.05 2.75 -10.79 -0.03 -2.08 16 3 C -0.14 -1.86 9.11 71.98 0.66 -1.20 16 4 C 0.12 2.70 3.51 29.85 0.10 2.80 16 5 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 6 F -0.19 -4.75 16.03 44.97 0.72 -4.03 16 7 C 0.44 13.63 7.30 71.24 0.52 14.15 16 8 O -0.50 -17.25 13.55 21.96 0.30 -16.95 16 9 O -0.34 -12.55 9.76 -45.11 -0.44 -12.99 16 10 C 0.08 3.23 4.71 71.24 0.34 3.56 16 11 C 0.48 22.92 7.65 87.66 0.67 23.59 16 12 O -0.57 -29.08 12.92 15.74 0.20 -28.87 16 13 N -0.39 -19.61 2.70 -458.91 -1.24 -20.85 16 14 C -0.39 -19.09 7.65 84.02 0.64 -18.44 16 15 H 0.11 4.78 7.55 -2.91 -0.02 4.75 16 16 C 0.02 1.10 3.62 84.91 0.31 1.41 16 17 N -0.87 -44.72 11.12 21.65 0.24 -44.48 16 18 Si 0.98 37.35 29.56 68.60 2.03 39.38 16 19 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 20 H -0.28 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 C 0.16 7.97 5.72 38.22 0.22 8.18 16 23 C -0.11 -5.32 7.56 22.40 0.17 -5.16 16 24 C -0.12 -4.96 10.04 22.25 0.22 -4.73 16 25 C -0.16 -5.93 10.04 22.30 0.22 -5.71 16 26 C -0.12 -4.81 10.04 22.25 0.22 -4.58 16 27 C -0.21 -10.16 9.04 22.41 0.20 -9.96 16 28 H 0.05 1.18 7.69 -2.39 -0.02 1.16 16 29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.74 5.26 -2.39 -0.01 1.73 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 0.85 7.94 -2.39 -0.02 0.83 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 4.26 7.88 -2.39 -0.02 4.24 16 36 H 0.11 3.95 8.08 -2.38 -0.02 3.93 16 37 H 0.28 13.43 8.32 -92.71 -0.77 12.66 16 38 H 0.11 5.44 5.69 -2.91 -0.02 5.42 16 39 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 41 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.16 7.95 4.56 -60.03 -0.27 7.68 16 Total: -1.00 -62.78 352.26 7.69 -55.09 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.78 Total: 34.73 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.10 Total: -1.02 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -1.00 Total: -65.33 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: 0.06 Total: -58.81 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.72 Total: -4.03 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -62.78 7.69 -55.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784303936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.596 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds