Wall clock time and date at job start Tue Mar 31 2020 14:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46877 * 2 1 4 4 C 1.52995 * 109.47150 * 119.99366 * 2 1 3 5 5 H 1.08996 * 109.47447 * 303.37564 * 4 2 1 6 6 F 1.39901 * 109.47505 * 183.36742 * 4 2 1 7 7 C 1.50700 * 109.46776 * 63.37178 * 4 2 1 8 8 O 1.20827 * 120.00382 * 45.34436 * 7 4 2 9 9 O 1.34232 * 120.00264 * 225.33725 * 7 4 2 10 10 C 1.45197 * 117.00510 * 179.97438 * 9 7 4 11 11 C 1.50700 * 109.47285 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99926 * 359.72871 * 11 10 9 13 13 N 1.34785 * 119.99969 * 180.02562 * 11 10 9 14 14 C 1.39238 * 120.00028 * 175.64227 * 13 11 10 15 15 C 1.39475 * 119.83309 * 215.92803 * 14 13 11 16 16 C 1.36371 * 120.16664 * 179.75903 * 15 14 13 17 17 C 1.40866 * 119.83005 * 0.51585 * 16 15 14 18 18 C 1.41155 * 120.16617 * 179.71390 * 17 16 15 19 19 H 1.07999 * 120.00209 * 207.40000 * 18 17 16 20 20 C 1.39907 * 119.99805 * 27.40769 * 18 17 16 21 21 N 1.30875 * 119.99975 * 12.03220 * 20 18 17 22 22 Si 1.86799 * 120.00164 * 192.02817 * 20 18 17 23 23 H 1.48495 * 109.46817 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47053 * 119.99884 * 22 20 18 25 25 H 1.48494 * 109.47554 * 240.00182 * 22 20 18 26 26 C 1.40872 * 119.67201 * 359.73728 * 17 16 15 27 27 C 1.36376 * 119.82712 * 0.02562 * 26 17 16 28 28 H 1.08999 * 109.47432 * 300.00338 * 1 2 3 29 29 H 1.08994 * 109.47280 * 60.00192 * 1 2 3 30 30 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47432 * 239.99662 * 2 1 3 32 32 H 1.09001 * 109.47316 * 175.68247 * 3 2 1 33 33 H 1.09005 * 109.47279 * 295.67865 * 3 2 1 34 34 H 1.08997 * 109.47532 * 55.67797 * 3 2 1 35 35 H 1.09006 * 109.47075 * 60.00257 * 10 9 7 36 36 H 1.08996 * 109.47244 * 300.00409 * 10 9 7 37 37 H 0.96999 * 119.99584 * 355.63836 * 13 11 10 38 38 H 1.08001 * 119.91518 * 0.02562 * 15 14 13 39 39 H 1.08007 * 120.08683 * 180.25061 * 16 15 14 40 40 H 0.96999 * 120.00096 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.08637 * 179.97438 * 26 17 16 42 42 H 1.08001 * 119.91690 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6281 -0.2433 2.1382 6 9 3.4369 -0.6544 1.2887 7 6 1.6070 -2.1640 1.2083 8 8 1.7260 -2.8018 0.1890 9 8 1.0892 -2.7408 2.3042 10 6 0.6933 -4.1332 2.1918 11 6 0.1380 -4.6056 3.5107 12 8 0.0861 -3.8452 4.4541 13 7 -0.2953 -5.8750 3.6436 14 6 -0.7236 -6.3380 4.8850 15 6 -0.4654 -7.6562 5.2606 16 6 -0.8774 -8.1154 6.4768 17 6 -1.5750 -7.2579 7.3500 18 6 -2.0100 -7.7276 8.6080 19 1 -2.8761 -7.2867 9.0790 20 6 -1.3192 -8.7643 9.2447 21 7 -0.1467 -9.1391 8.8001 22 14 -2.0702 -9.6134 10.7294 23 1 -3.3927 -9.0084 11.0291 24 1 -2.2425 -11.0594 10.4381 25 1 -1.1727 -9.4480 11.9008 26 6 -1.8367 -5.9294 6.9613 27 6 -1.4141 -5.4831 5.7439 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1272 1.4436 0.0774 33 1 1.7412 1.9335 -0.9262 34 1 1.6148 1.9782 0.8487 35 1 1.5607 -4.7372 1.9251 36 1 -0.0699 -4.2328 1.4201 37 1 -0.3089 -6.4658 2.8745 38 1 0.0660 -8.3136 4.5884 39 1 -0.6732 -9.1352 6.7680 40 1 0.3324 -9.8576 9.2418 41 1 -2.3713 -5.2664 7.6253 42 1 -1.6143 -4.4649 5.4443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784310071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:33 Heat of formation + Delta-G solvation = -155.453443 kcal Electronic energy + Delta-G solvation = -26122.168788 eV Core-core repulsion = 21981.447171 eV Total energy + Delta-G solvation = -4140.721617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.37303 -40.90687 -39.60447 -37.48948 -36.77983 -35.92636 -34.53232 -33.06759 -30.21069 -29.59518 -28.89834 -27.75308 -27.42560 -24.83248 -22.52578 -21.68214 -20.87074 -20.58807 -19.85354 -18.63448 -17.69730 -17.39432 -17.33166 -16.56252 -16.40429 -16.11009 -15.78300 -15.23433 -14.93297 -14.52923 -14.38351 -13.98048 -13.51753 -13.37265 -13.22623 -13.13668 -12.79786 -12.70938 -12.63274 -12.47963 -12.15567 -11.84559 -11.65790 -11.60090 -11.40628 -11.18990 -11.13528 -11.11676 -10.97007 -10.79020 -10.73996 -10.07421 -9.63509 -9.45995 -9.20622 -8.98416 -7.60031 -7.04024 -6.76295 -4.37209 1.61685 1.90909 2.44233 2.90091 3.04239 3.06043 3.10909 3.22440 3.49842 3.77531 3.90487 4.19131 4.23750 4.31182 4.58803 4.64713 4.75539 4.87558 4.94147 4.95815 4.99896 5.18390 5.32642 5.37799 5.57084 5.63846 5.75318 5.77494 5.92419 6.14290 6.38100 6.67268 6.85013 6.99403 7.12001 7.19614 7.24065 7.55045 7.64230 7.80101 7.98624 8.16297 8.23150 8.52501 8.61582 8.84130 8.92801 10.15901 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.034386 B = 0.002017 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.092529 B =13877.018665 C =13987.709526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.114 3.886 5 H 0.120 0.880 6 F -0.181 7.181 7 C 0.443 3.557 8 O -0.488 6.488 9 O -0.321 6.321 10 C 0.050 3.950 11 C 0.498 3.502 12 O -0.508 6.508 13 N -0.643 5.643 14 C -0.011 4.011 15 C -0.111 4.111 16 C -0.150 4.150 17 C 0.106 3.894 18 C -0.455 4.455 19 H 0.079 0.921 20 C 0.071 3.929 21 N -0.797 5.797 22 Si 0.912 3.088 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.215 4.215 27 C -0.075 4.075 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.397 0.603 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.280 0.720 41 H 0.096 0.904 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 12.433 -16.143 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.206 4.206 4 C 0.077 3.923 5 H 0.138 0.862 6 F -0.161 7.161 7 C 0.283 3.717 8 O -0.374 6.374 9 O -0.235 6.235 10 C -0.028 4.028 11 C 0.282 3.718 12 O -0.383 6.383 13 N -0.288 5.288 14 C -0.103 4.103 15 C -0.131 4.131 16 C -0.170 4.170 17 C 0.103 3.897 18 C -0.484 4.484 19 H 0.097 0.903 20 C -0.146 4.146 21 N -0.423 5.423 22 Si 0.737 3.263 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.235 4.235 27 C -0.095 4.095 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.231 0.769 38 H 0.110 0.890 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.637 12.612 -15.695 20.306 hybrid contribution 0.031 -1.004 0.199 1.024 sum 2.668 11.608 -15.496 19.545 Atomic orbital electron populations 1.21864 0.93106 1.02681 1.03389 1.21687 0.97624 0.97561 0.96489 1.21831 1.02054 0.93746 1.02923 1.21315 0.77599 0.89653 1.03742 0.86203 1.92913 1.28658 1.96612 1.97937 1.24140 0.75150 0.90725 0.81646 1.90691 1.50002 1.64454 1.32269 1.86584 1.71992 1.27029 1.37906 1.22831 1.01982 0.79995 0.97968 1.19876 0.79656 0.83404 0.88822 1.90745 1.53854 1.53751 1.39968 1.42748 1.63117 1.11650 1.11236 1.17132 1.10211 0.95212 0.87773 1.20247 1.01767 0.93718 0.97398 1.20976 1.03565 1.00534 0.91949 1.17717 0.89485 0.90068 0.92434 1.19619 1.11724 1.14698 1.02385 0.90290 1.25945 0.93955 0.95816 0.98878 1.69820 1.10389 1.23942 1.38121 0.86194 0.80266 0.79350 0.80521 1.18407 1.19752 1.19961 1.20703 1.09578 0.95844 0.97371 1.20353 0.96661 0.97980 0.94536 0.91468 0.90965 0.92396 0.88536 0.91539 0.91354 0.91825 0.87989 0.88150 0.76910 0.89037 0.85701 0.90898 0.88560 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.99 37.16 0.33 -0.68 16 2 C -0.11 -0.85 2.59 -90.62 -0.23 -1.08 16 3 C -0.15 -0.85 9.10 37.16 0.34 -0.51 16 4 C 0.11 1.08 3.41 -27.89 -0.10 0.98 16 5 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 6 F -0.18 -1.99 16.34 2.25 0.04 -1.95 16 7 C 0.44 5.36 6.19 36.01 0.22 5.58 16 8 O -0.49 -6.59 16.20 -18.75 -0.30 -6.89 16 9 O -0.32 -4.42 9.75 -45.91 -0.45 -4.86 16 10 C 0.05 0.63 5.95 36.01 0.21 0.84 16 11 C 0.50 8.48 7.73 -10.98 -0.08 8.40 16 12 O -0.51 -10.96 13.99 -14.10 -0.20 -11.16 16 13 N -0.64 -10.80 5.30 -9.74 -0.05 -10.86 16 14 C -0.01 -0.25 6.29 -83.57 -0.53 -0.77 16 15 C -0.11 -2.48 9.90 -39.79 -0.39 -2.87 16 16 C -0.15 -3.79 8.61 -39.26 -0.34 -4.13 16 17 C 0.11 2.79 5.56 -106.80 -0.59 2.20 16 18 C -0.45 -11.90 9.05 -37.85 -0.34 -12.25 16 19 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 20 C 0.07 1.76 5.24 -17.33 -0.09 1.67 16 21 N -0.80 -20.33 10.81 55.55 0.60 -19.73 16 22 Si 0.91 18.43 29.58 -169.99 -5.03 13.40 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.21 -5.38 9.74 -39.26 -0.38 -5.76 16 27 C -0.08 -1.78 8.60 -39.79 -0.34 -2.12 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 7.33 -51.93 -0.38 0.08 16 31 H 0.10 0.79 7.80 -51.93 -0.41 0.39 16 32 H 0.07 0.41 7.59 -51.93 -0.39 0.02 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.10 1.01 8.13 -51.93 -0.42 0.58 16 37 H 0.40 4.99 8.82 -40.82 -0.36 4.63 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 3.23 6.15 -52.48 -0.32 2.91 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 42 H 0.11 2.45 6.30 -52.49 -0.33 2.12 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -31.62 363.50 -7.77 -39.40 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.55 Total: 7.68 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.32 Total: -10.51 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.55 Total: -30.59 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.95 Total: -22.92 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.62 -7.77 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784310071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.056 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds