Wall clock time and date at job start Tue Mar 31 2020 14:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46877 * 2 1 4 4 C 1.52995 * 109.47150 * 119.99366 * 2 1 3 5 5 H 1.08996 * 109.47447 * 303.37564 * 4 2 1 6 6 F 1.39901 * 109.47505 * 183.36742 * 4 2 1 7 7 C 1.50700 * 109.46776 * 63.37178 * 4 2 1 8 8 O 1.20827 * 120.00382 * 45.34436 * 7 4 2 9 9 O 1.34232 * 120.00264 * 225.33725 * 7 4 2 10 10 C 1.45197 * 117.00510 * 179.97438 * 9 7 4 11 11 C 1.50700 * 109.47285 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99926 * 359.72871 * 11 10 9 13 13 N 1.34785 * 119.99969 * 180.02562 * 11 10 9 14 14 C 1.39238 * 120.00028 * 175.64227 * 13 11 10 15 15 C 1.39475 * 119.83309 * 215.92803 * 14 13 11 16 16 C 1.36371 * 120.16664 * 179.75903 * 15 14 13 17 17 C 1.40866 * 119.83005 * 0.51585 * 16 15 14 18 18 C 1.41155 * 120.16617 * 179.71390 * 17 16 15 19 19 H 1.07999 * 120.00209 * 207.40000 * 18 17 16 20 20 C 1.39907 * 119.99805 * 27.40769 * 18 17 16 21 21 N 1.30875 * 119.99975 * 12.03220 * 20 18 17 22 22 Si 1.86799 * 120.00164 * 192.02817 * 20 18 17 23 23 H 1.48495 * 109.46817 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47053 * 119.99884 * 22 20 18 25 25 H 1.48494 * 109.47554 * 240.00182 * 22 20 18 26 26 C 1.40872 * 119.67201 * 359.73728 * 17 16 15 27 27 C 1.36376 * 119.82712 * 0.02562 * 26 17 16 28 28 H 1.08999 * 109.47432 * 300.00338 * 1 2 3 29 29 H 1.08994 * 109.47280 * 60.00192 * 1 2 3 30 30 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47432 * 239.99662 * 2 1 3 32 32 H 1.09001 * 109.47316 * 175.68247 * 3 2 1 33 33 H 1.09005 * 109.47279 * 295.67865 * 3 2 1 34 34 H 1.08997 * 109.47532 * 55.67797 * 3 2 1 35 35 H 1.09006 * 109.47075 * 60.00257 * 10 9 7 36 36 H 1.08996 * 109.47244 * 300.00409 * 10 9 7 37 37 H 0.96999 * 119.99584 * 355.63836 * 13 11 10 38 38 H 1.08001 * 119.91518 * 0.02562 * 15 14 13 39 39 H 1.08007 * 120.08683 * 180.25061 * 16 15 14 40 40 H 0.96999 * 120.00096 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.08637 * 179.97438 * 26 17 16 42 42 H 1.08001 * 119.91690 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6281 -0.2433 2.1382 6 9 3.4369 -0.6544 1.2887 7 6 1.6070 -2.1640 1.2083 8 8 1.7260 -2.8018 0.1890 9 8 1.0892 -2.7408 2.3042 10 6 0.6933 -4.1332 2.1918 11 6 0.1380 -4.6056 3.5107 12 8 0.0861 -3.8452 4.4541 13 7 -0.2953 -5.8750 3.6436 14 6 -0.7236 -6.3380 4.8850 15 6 -0.4654 -7.6562 5.2606 16 6 -0.8774 -8.1154 6.4768 17 6 -1.5750 -7.2579 7.3500 18 6 -2.0100 -7.7276 8.6080 19 1 -2.8761 -7.2867 9.0790 20 6 -1.3192 -8.7643 9.2447 21 7 -0.1467 -9.1391 8.8001 22 14 -2.0702 -9.6134 10.7294 23 1 -3.3927 -9.0084 11.0291 24 1 -2.2425 -11.0594 10.4381 25 1 -1.1727 -9.4480 11.9008 26 6 -1.8367 -5.9294 6.9613 27 6 -1.4141 -5.4831 5.7439 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1272 1.4436 0.0774 33 1 1.7412 1.9335 -0.9262 34 1 1.6148 1.9782 0.8487 35 1 1.5607 -4.7372 1.9251 36 1 -0.0699 -4.2328 1.4201 37 1 -0.3089 -6.4658 2.8745 38 1 0.0660 -8.3136 4.5884 39 1 -0.6732 -9.1352 6.7680 40 1 0.3324 -9.8576 9.2418 41 1 -2.3713 -5.2664 7.6253 42 1 -1.6143 -4.4649 5.4443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784310071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:33 Heat of formation + Delta-G solvation = -172.546637 kcal Electronic energy + Delta-G solvation = -26122.910004 eV Core-core repulsion = 21981.447171 eV Total energy + Delta-G solvation = -4141.462833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.17915 -41.95540 -41.06221 -39.13305 -37.88316 -36.58533 -36.22138 -34.81663 -31.66384 -31.37606 -30.24904 -28.73032 -28.00215 -26.56714 -23.70951 -23.14766 -22.56494 -21.45138 -21.24206 -19.57860 -19.29446 -18.90842 -18.27125 -17.82017 -17.62652 -17.20968 -17.03516 -16.58037 -16.09754 -15.74556 -15.61893 -15.28214 -14.98564 -14.57490 -14.36120 -14.14189 -13.95349 -13.92551 -13.70418 -13.64667 -13.36647 -13.24612 -13.05107 -12.85810 -12.79336 -12.50021 -12.23725 -12.12255 -12.05476 -11.79195 -11.71665 -11.63678 -11.45042 -11.21150 -10.89718 -10.68096 -9.48792 -8.87867 -8.59917 -6.31801 0.68281 0.72951 0.96487 1.12884 1.38530 1.40341 1.54755 1.65286 2.21304 2.25894 2.74405 3.11400 3.31854 3.53055 3.55306 3.69220 3.71120 3.94176 3.97730 4.10121 4.32068 4.38417 4.46307 4.50070 4.75682 4.79567 4.90766 4.92779 4.95995 5.09698 5.10667 5.12047 5.27176 5.28859 5.33936 5.39561 5.65332 5.86587 5.98729 6.07965 6.26668 6.35414 6.59377 6.65117 6.92199 6.95946 7.25226 8.34252 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.034386 B = 0.002017 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.092529 B =13877.018665 C =13987.709526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.146 4.146 4 C 0.111 3.889 5 H 0.138 0.862 6 F -0.190 7.190 7 C 0.446 3.554 8 O -0.503 6.503 9 O -0.339 6.339 10 C 0.057 3.943 11 C 0.500 3.500 12 O -0.557 6.557 13 N -0.633 5.633 14 C 0.005 3.995 15 C -0.109 4.109 16 C -0.169 4.169 17 C 0.074 3.926 18 C -0.492 4.492 19 H 0.075 0.925 20 C 0.031 3.969 21 N -0.828 5.828 22 Si 0.987 3.013 23 H -0.259 1.259 24 H -0.261 1.261 25 H -0.268 1.268 26 C -0.232 4.232 27 C -0.087 4.087 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.422 0.578 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.288 0.712 41 H 0.095 0.905 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 12.714 -17.679 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.129 4.129 3 C -0.203 4.203 4 C 0.074 3.926 5 H 0.156 0.844 6 F -0.171 7.171 7 C 0.287 3.713 8 O -0.390 6.390 9 O -0.254 6.254 10 C -0.020 4.020 11 C 0.287 3.713 12 O -0.435 6.435 13 N -0.280 5.280 14 C -0.088 4.088 15 C -0.129 4.129 16 C -0.189 4.189 17 C 0.071 3.929 18 C -0.522 4.522 19 H 0.093 0.907 20 C -0.183 4.183 21 N -0.455 5.455 22 Si 0.807 3.193 23 H -0.183 1.183 24 H -0.186 1.186 25 H -0.193 1.193 26 C -0.253 4.253 27 C -0.107 4.107 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.260 0.740 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.896 12.887 -17.292 21.760 hybrid contribution 0.008 -0.992 0.520 1.119 sum 2.905 11.896 -16.772 20.767 Atomic orbital electron populations 1.21879 0.92404 1.02066 1.04584 1.21698 0.98116 0.98172 0.94904 1.21835 1.01644 0.92665 1.04134 1.21632 0.77047 0.88243 1.05718 0.84438 1.92892 1.29608 1.96520 1.98076 1.24620 0.74367 0.91416 0.80876 1.90679 1.50685 1.65027 1.32656 1.86579 1.72381 1.27500 1.38959 1.22820 1.03665 0.80090 0.95417 1.20603 0.78250 0.82542 0.89900 1.90732 1.55613 1.54990 1.42115 1.42609 1.62676 1.12337 1.10384 1.17176 1.07968 0.94626 0.89011 1.20518 1.00995 0.94445 0.96897 1.20989 1.04624 1.00097 0.93195 1.18043 0.90713 0.90839 0.93278 1.19832 1.12556 1.16631 1.03164 0.90714 1.26777 0.94025 0.95808 1.01697 1.69863 1.11379 1.24569 1.39687 0.85085 0.79215 0.78354 0.76600 1.18300 1.18583 1.19311 1.20837 1.10334 0.95757 0.98329 1.20480 0.97189 0.98396 0.94632 0.90617 0.89503 0.93845 0.89529 0.92173 0.89976 0.90846 0.85703 0.84864 0.74018 0.85532 0.86832 0.90090 0.88672 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.99 71.98 0.65 -1.07 16 2 C -0.11 -1.44 2.59 -10.80 -0.03 -1.47 16 3 C -0.15 -1.36 9.10 71.98 0.66 -0.70 16 4 C 0.11 1.92 3.41 29.85 0.10 2.02 16 5 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 6 F -0.19 -3.97 16.34 44.97 0.73 -3.23 16 7 C 0.45 10.04 6.19 71.24 0.44 10.48 16 8 O -0.50 -12.67 16.20 21.96 0.36 -12.31 16 9 O -0.34 -8.73 9.75 -45.08 -0.44 -9.17 16 10 C 0.06 1.27 5.95 71.24 0.42 1.70 16 11 C 0.50 16.10 7.73 87.66 0.68 16.78 16 12 O -0.56 -23.71 13.99 15.78 0.22 -23.49 16 13 N -0.63 -19.81 5.30 -303.11 -1.61 -21.41 16 14 C 0.01 0.23 6.29 38.56 0.24 0.47 16 15 C -0.11 -4.74 9.90 22.13 0.22 -4.52 16 16 C -0.17 -8.68 8.61 22.48 0.19 -8.48 16 17 C 0.07 4.04 5.56 -21.28 -0.12 3.92 16 18 C -0.49 -26.73 9.05 23.39 0.21 -26.52 16 19 H 0.07 3.94 7.87 -2.91 -0.02 3.92 16 20 C 0.03 1.56 5.24 85.24 0.45 2.00 16 21 N -0.83 -43.01 10.81 21.82 0.24 -42.77 16 22 Si 0.99 38.12 29.58 68.60 2.03 40.15 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 25 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 26 C -0.23 -12.06 9.74 22.48 0.22 -11.84 16 27 C -0.09 -4.15 8.60 22.14 0.19 -3.96 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.62 7.33 -2.38 -0.02 0.60 16 31 H 0.09 1.31 7.80 -2.39 -0.02 1.29 16 32 H 0.06 0.65 7.59 -2.39 -0.02 0.63 16 33 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.13 2.31 8.13 -2.38 -0.02 2.29 16 36 H 0.13 2.17 8.13 -2.39 -0.02 2.15 16 37 H 0.42 9.14 8.82 -92.71 -0.82 8.32 16 38 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.11 6.02 6.15 -2.91 -0.02 6.00 16 40 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 41 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.11 5.02 6.30 -2.91 -0.02 5.00 16 Total: -1.00 -70.55 363.50 6.29 -64.26 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.24 Total: 29.17 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 4.52 Total: -21.19 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -1.37 Total: -64.19 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: 0.14 Total: -44.97 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.73 Total: -3.23 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -70.55 6.29 -64.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784310071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.287 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds