Wall clock time and date at job start Tue Mar 31 2020 14:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47434 * 2 1 4 4 C 1.52998 * 109.47120 * 120.00427 * 2 1 3 5 5 H 1.08996 * 109.47271 * 54.65722 * 4 2 1 6 6 N 1.46500 * 109.47072 * 174.66181 * 4 2 1 7 7 C 1.34771 * 119.99980 * 274.99239 * 6 4 2 8 8 O 1.21286 * 120.00086 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99925 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.47197 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00273 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99677 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00112 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00048 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00035 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47339 * 90.00033 * 15 13 11 17 17 H 1.48503 * 109.47220 * 210.00025 * 15 13 11 18 18 H 1.48500 * 109.47100 * 329.99616 * 15 13 11 19 19 C 1.53007 * 109.46773 * 294.66086 * 4 2 1 20 20 H 1.08999 * 109.47116 * 305.92582 * 19 4 2 21 21 O 1.42898 * 109.46948 * 65.92457 * 19 4 2 22 22 C 1.50700 * 109.46957 * 185.92355 * 19 4 2 23 23 C 1.38234 * 120.00085 * 97.48646 * 22 19 4 24 24 C 1.38231 * 120.00517 * 179.97438 * 23 22 19 25 25 C 1.38237 * 119.99520 * 359.96302 * 24 23 22 26 26 C 1.38237 * 120.00421 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00045 * 277.46661 * 22 19 4 28 28 H 1.09007 * 109.46874 * 309.89693 * 1 2 3 29 29 H 1.08999 * 109.47147 * 69.89312 * 1 2 3 30 30 H 1.08995 * 109.47014 * 189.89360 * 1 2 3 31 31 H 1.09001 * 109.47028 * 239.99765 * 2 1 3 32 32 H 1.08996 * 109.46936 * 181.94100 * 3 2 1 33 33 H 1.09003 * 109.47007 * 301.93536 * 3 2 1 34 34 H 1.08995 * 109.47327 * 61.93727 * 3 2 1 35 35 H 0.96998 * 119.99839 * 95.00020 * 6 4 2 36 36 H 1.08991 * 109.47473 * 300.00615 * 9 7 6 37 37 H 1.09001 * 109.46673 * 60.01059 * 9 7 6 38 38 H 0.96997 * 120.00362 * 180.02562 * 14 13 11 39 39 H 0.96699 * 114.00092 * 64.03850 * 21 19 4 40 40 H 1.08006 * 119.99718 * 359.97438 * 23 22 19 41 41 H 1.08003 * 120.00567 * 179.97438 * 24 23 22 42 42 H 1.08007 * 120.00009 * 179.71603 * 25 24 23 43 43 H 1.07995 * 120.00277 * 179.97438 * 26 25 24 44 44 H 1.07993 * 120.00098 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6007 -1.7176 1.2983 6 7 3.4994 -0.8336 1.1866 7 6 4.0685 -1.8578 0.5207 8 8 3.3725 -2.6863 -0.0273 9 6 5.5697 -1.9729 0.4559 10 16 6.0214 -3.4408 -0.5020 11 6 7.7781 -3.3325 -0.4178 12 1 8.2438 -2.5187 0.1182 13 6 8.5633 -4.2924 -1.0412 14 7 9.8756 -4.2112 -0.9787 15 14 7.7577 -5.6987 -1.9700 16 1 7.5535 -5.3035 -3.3868 17 1 8.6334 -6.8965 -1.9115 18 1 6.4457 -6.0141 -1.3500 19 6 1.6425 0.0732 2.4949 20 1 1.9926 1.1009 2.3974 21 8 0.2200 0.0655 2.6309 22 6 2.2671 -0.5568 3.7130 23 6 3.4447 -0.0477 4.2277 24 6 4.0174 -0.6252 5.3454 25 6 3.4120 -1.7116 5.9489 26 6 2.2336 -2.2200 5.4351 27 6 1.6622 -1.6437 4.3161 28 1 -0.3633 0.6592 0.7885 29 1 -0.3633 0.3533 -0.9650 30 1 -0.3633 -1.0123 0.1766 31 1 1.8933 -0.5139 -0.8900 32 1 3.1295 1.4426 -0.0348 33 1 1.6487 1.9662 -0.8722 34 1 1.7055 1.9462 0.9068 35 1 4.0560 -0.1709 1.6246 36 1 5.9819 -1.0854 -0.0240 37 1 5.9713 -2.0599 1.4655 38 1 10.4243 -4.8818 -1.4146 39 1 -0.1557 -0.8122 2.7841 40 1 3.9174 0.8014 3.7564 41 1 4.9377 -0.2277 5.7472 42 1 3.8618 -2.1658 6.8195 43 1 1.7609 -3.0689 5.9064 44 1 0.7422 -2.0416 3.9140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790393667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:16 Heat of formation + Delta-G solvation = -71.862473 kcal Electronic energy + Delta-G solvation = -25441.541507 eV Core-core repulsion = 21870.657843 eV Total energy + Delta-G solvation = -3570.883664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63302 -39.07361 -37.76518 -35.46288 -33.38133 -32.44289 -31.69429 -31.08518 -29.59634 -27.34356 -27.22211 -25.61568 -24.21090 -22.82737 -21.58295 -20.81890 -19.62774 -18.07580 -17.87765 -16.74146 -16.55719 -16.15291 -15.81823 -15.13125 -15.00795 -14.84199 -14.74238 -14.21535 -13.99891 -13.68685 -13.60321 -13.42161 -13.29683 -12.88305 -12.79928 -12.64529 -12.32861 -12.18917 -11.75911 -11.61624 -11.44937 -11.29551 -11.27101 -11.04907 -11.01491 -10.83294 -10.59856 -10.04810 -9.85679 -9.50920 -9.14404 -9.01660 -8.97701 -8.86922 -8.50302 -6.91827 -6.29430 -4.00909 1.09911 1.18525 2.74085 2.97765 3.25980 3.32880 3.49855 3.51726 3.62261 4.18974 4.22619 4.32705 4.48659 4.61109 4.73342 4.76247 4.83415 4.89559 4.92778 5.03592 5.09795 5.13235 5.26759 5.27865 5.39630 5.56548 5.63222 5.70417 5.72675 5.76742 5.81205 5.83168 5.87416 6.01061 6.07508 6.19020 6.22809 6.27815 6.31519 6.37716 6.54984 6.75932 7.20013 7.59030 7.93693 8.41139 8.49525 9.16898 10.79886 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.003711 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.619108 B = 7542.857571 C = 8789.622177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.150 4.150 4 C 0.129 3.871 5 H 0.089 0.911 6 N -0.725 5.725 7 C 0.534 3.466 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.141 6.141 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.881 5.881 15 Si 0.856 3.144 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 C 0.140 3.860 20 H 0.116 0.884 21 O -0.541 6.541 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.112 4.112 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.397 0.603 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.271 0.729 39 H 0.374 0.626 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.223 11.273 11.812 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.207 4.207 4 C 0.023 3.977 5 H 0.107 0.893 6 N -0.380 5.380 7 C 0.321 3.679 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.086 5.914 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.112 4.112 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 C 0.081 3.919 20 H 0.133 0.867 21 O -0.346 6.346 22 C -0.113 4.113 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.130 4.130 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.231 0.769 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.223 0.777 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.142 10.441 10.762 24.316 hybrid contribution 1.214 -0.067 0.477 1.306 sum -17.928 10.374 11.239 23.566 Atomic orbital electron populations 1.21958 0.94252 1.02292 1.02102 1.21436 0.96487 0.96298 0.98090 1.21913 1.01076 0.95911 1.01820 1.21606 0.81538 1.00161 0.94346 0.89253 1.45836 1.06303 1.29044 1.56768 1.20229 0.90059 0.80256 0.77404 1.90695 1.64130 1.40340 1.44095 1.23268 0.93671 1.05036 1.05443 1.84777 1.07897 1.29779 1.68979 1.22318 0.88196 1.15952 1.40408 0.89427 1.24701 0.94238 0.97322 0.94969 1.69937 1.03548 1.35471 1.42782 0.86743 0.81506 0.82106 0.81550 1.19200 1.19939 1.15954 1.21139 0.81128 1.00048 0.89625 0.86670 1.86641 1.18644 1.34944 1.94410 1.20453 0.96438 0.96926 0.97467 1.20939 0.95285 1.00139 0.96590 1.21166 0.99755 0.96310 0.95900 1.21200 0.95736 0.96595 1.00178 1.21117 0.96087 0.99651 0.96310 1.20814 1.00023 0.95769 0.96390 0.90149 0.93353 0.93121 0.90488 0.92645 0.92583 0.92372 0.76913 0.88605 0.88593 0.91949 0.77690 0.86038 0.85801 0.86010 0.85986 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.21 37.16 0.31 -1.10 16 2 C -0.10 -1.12 2.87 -90.62 -0.26 -1.38 16 3 C -0.15 -1.38 8.62 37.16 0.32 -1.06 16 4 C 0.13 1.40 1.67 -67.93 -0.11 1.29 16 5 H 0.09 1.15 7.55 -51.93 -0.39 0.75 16 6 N -0.72 -8.97 3.99 -53.80 -0.21 -9.19 16 7 C 0.53 9.32 7.81 -10.99 -0.09 9.23 16 8 O -0.52 -10.95 15.53 5.55 0.09 -10.87 16 9 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 10 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 11 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 14 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 15 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 19 C 0.14 1.21 2.52 -27.88 -0.07 1.14 16 20 H 0.12 0.92 5.85 -51.93 -0.30 0.62 16 21 O -0.54 -4.38 10.01 -35.23 -0.35 -4.74 16 22 C -0.11 -1.06 4.49 -104.62 -0.47 -1.53 16 23 C -0.11 -1.02 8.78 -39.59 -0.35 -1.37 16 24 C -0.11 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 26 C -0.11 -1.08 10.05 -39.58 -0.40 -1.47 16 27 C -0.11 -1.06 9.31 -39.58 -0.37 -1.43 16 28 H 0.08 0.72 5.98 -51.92 -0.31 0.41 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.52 7.82 -51.93 -0.41 0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.47 6.10 -51.93 -0.32 0.15 16 35 H 0.40 3.99 7.64 -40.82 -0.31 3.68 16 36 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.37 2.20 7.30 45.56 0.33 2.53 16 40 H 0.12 0.87 7.96 -52.48 -0.42 0.45 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.88 6.62 -52.49 -0.35 0.53 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -34.33 368.97 -8.55 -42.89 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.85 Total: 5.40 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.85 Total: -14.80 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.56 Total: -34.99 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.27 Total: -15.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.33 -8.55 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790393667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.977 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds