Wall clock time and date at job start Tue Mar 31 2020 14:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47434 * 2 1 4 4 C 1.52998 * 109.47120 * 120.00427 * 2 1 3 5 5 H 1.08996 * 109.47271 * 54.65722 * 4 2 1 6 6 N 1.46500 * 109.47072 * 174.66181 * 4 2 1 7 7 C 1.34771 * 119.99980 * 274.99239 * 6 4 2 8 8 O 1.21286 * 120.00086 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99925 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.47197 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00273 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99677 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00112 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00048 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00035 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47339 * 90.00033 * 15 13 11 17 17 H 1.48503 * 109.47220 * 210.00025 * 15 13 11 18 18 H 1.48500 * 109.47100 * 329.99616 * 15 13 11 19 19 C 1.53007 * 109.46773 * 294.66086 * 4 2 1 20 20 H 1.08999 * 109.47116 * 305.92582 * 19 4 2 21 21 O 1.42898 * 109.46948 * 65.92457 * 19 4 2 22 22 C 1.50700 * 109.46957 * 185.92355 * 19 4 2 23 23 C 1.38234 * 120.00085 * 97.48646 * 22 19 4 24 24 C 1.38231 * 120.00517 * 179.97438 * 23 22 19 25 25 C 1.38237 * 119.99520 * 359.96302 * 24 23 22 26 26 C 1.38237 * 120.00421 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00045 * 277.46661 * 22 19 4 28 28 H 1.09007 * 109.46874 * 309.89693 * 1 2 3 29 29 H 1.08999 * 109.47147 * 69.89312 * 1 2 3 30 30 H 1.08995 * 109.47014 * 189.89360 * 1 2 3 31 31 H 1.09001 * 109.47028 * 239.99765 * 2 1 3 32 32 H 1.08996 * 109.46936 * 181.94100 * 3 2 1 33 33 H 1.09003 * 109.47007 * 301.93536 * 3 2 1 34 34 H 1.08995 * 109.47327 * 61.93727 * 3 2 1 35 35 H 0.96998 * 119.99839 * 95.00020 * 6 4 2 36 36 H 1.08991 * 109.47473 * 300.00615 * 9 7 6 37 37 H 1.09001 * 109.46673 * 60.01059 * 9 7 6 38 38 H 0.96997 * 120.00362 * 180.02562 * 14 13 11 39 39 H 0.96699 * 114.00092 * 64.03850 * 21 19 4 40 40 H 1.08006 * 119.99718 * 359.97438 * 23 22 19 41 41 H 1.08003 * 120.00567 * 179.97438 * 24 23 22 42 42 H 1.08007 * 120.00009 * 179.71603 * 25 24 23 43 43 H 1.07995 * 120.00277 * 179.97438 * 26 25 24 44 44 H 1.07993 * 120.00098 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6007 -1.7176 1.2983 6 7 3.4994 -0.8336 1.1866 7 6 4.0685 -1.8578 0.5207 8 8 3.3725 -2.6863 -0.0273 9 6 5.5697 -1.9729 0.4559 10 16 6.0214 -3.4408 -0.5020 11 6 7.7781 -3.3325 -0.4178 12 1 8.2438 -2.5187 0.1182 13 6 8.5633 -4.2924 -1.0412 14 7 9.8756 -4.2112 -0.9787 15 14 7.7577 -5.6987 -1.9700 16 1 7.5535 -5.3035 -3.3868 17 1 8.6334 -6.8965 -1.9115 18 1 6.4457 -6.0141 -1.3500 19 6 1.6425 0.0732 2.4949 20 1 1.9926 1.1009 2.3974 21 8 0.2200 0.0655 2.6309 22 6 2.2671 -0.5568 3.7130 23 6 3.4447 -0.0477 4.2277 24 6 4.0174 -0.6252 5.3454 25 6 3.4120 -1.7116 5.9489 26 6 2.2336 -2.2200 5.4351 27 6 1.6622 -1.6437 4.3161 28 1 -0.3633 0.6592 0.7885 29 1 -0.3633 0.3533 -0.9650 30 1 -0.3633 -1.0123 0.1766 31 1 1.8933 -0.5139 -0.8900 32 1 3.1295 1.4426 -0.0348 33 1 1.6487 1.9662 -0.8722 34 1 1.7055 1.9462 0.9068 35 1 4.0560 -0.1709 1.6246 36 1 5.9819 -1.0854 -0.0240 37 1 5.9713 -2.0599 1.4655 38 1 10.4243 -4.8818 -1.4146 39 1 -0.1557 -0.8122 2.7841 40 1 3.9174 0.8014 3.7564 41 1 4.9377 -0.2277 5.7472 42 1 3.8618 -2.1658 6.8195 43 1 1.7609 -3.0689 5.9064 44 1 0.7422 -2.0416 3.9140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790393667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:15 Heat of formation + Delta-G solvation = -94.540003 kcal Electronic energy + Delta-G solvation = -25442.524878 eV Core-core repulsion = 21870.657843 eV Total energy + Delta-G solvation = -3571.867036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55287 -40.13653 -38.63982 -36.32834 -34.68388 -34.44602 -32.50538 -31.75500 -30.95597 -28.27832 -28.01683 -27.80229 -25.04421 -23.51565 -22.32799 -22.03428 -20.57398 -19.95396 -18.62753 -18.10549 -17.68950 -17.10188 -16.87576 -16.70274 -16.40802 -15.90221 -15.59060 -15.49307 -15.11611 -14.97658 -14.76159 -14.40133 -14.32672 -14.10878 -13.67133 -13.58230 -13.38173 -13.35022 -13.13280 -13.02672 -12.68699 -12.43517 -12.37357 -12.29347 -11.96652 -11.88765 -11.84305 -11.58606 -11.17929 -11.05215 -10.77885 -10.54404 -10.05751 -9.81533 -9.64009 -9.00062 -8.52288 -6.22825 0.39632 0.49691 0.97580 1.30280 1.45467 1.54232 1.57032 2.16659 2.24536 2.70512 2.81999 2.86166 3.45479 3.52603 3.68619 3.88342 3.93756 4.05633 4.08022 4.14537 4.21886 4.26024 4.28260 4.39154 4.44541 4.60864 4.66551 4.75107 4.86989 4.91759 5.00923 5.07111 5.11844 5.13653 5.28289 5.38277 5.44531 5.54661 5.60152 5.61921 5.63273 5.70118 6.09514 6.10739 6.42865 6.63788 6.93113 7.18678 8.60239 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.003711 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.619108 B = 7542.857571 C = 8789.622177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.148 4.148 4 C 0.132 3.868 5 H 0.071 0.929 6 N -0.700 5.700 7 C 0.540 3.460 8 O -0.559 6.559 9 C -0.111 4.111 10 S -0.173 6.173 11 C -0.529 4.529 12 H 0.062 0.938 13 C 0.048 3.952 14 N -0.917 5.917 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.238 1.238 19 C 0.156 3.844 20 H 0.130 0.870 21 O -0.542 6.542 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.133 4.133 26 C -0.129 4.129 27 C -0.126 4.126 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.277 0.723 39 H 0.385 0.615 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.655 12.342 12.477 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.205 4.205 4 C 0.027 3.973 5 H 0.089 0.911 6 N -0.354 5.354 7 C 0.325 3.675 8 O -0.437 6.437 9 C -0.262 4.262 10 S 0.053 5.947 11 C -0.676 4.676 12 H 0.080 0.920 13 C -0.158 4.158 14 N -0.555 5.555 15 Si 0.735 3.265 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.162 1.162 19 C 0.097 3.903 20 H 0.147 0.853 21 O -0.349 6.349 22 C -0.124 4.124 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.143 4.143 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.583 11.550 11.460 26.237 hybrid contribution 1.604 -0.285 0.376 1.672 sum -18.978 11.265 11.836 25.044 Atomic orbital electron populations 1.21916 0.93055 1.02428 1.02601 1.21388 0.97482 0.96971 0.96340 1.21906 1.00908 0.94713 1.02930 1.21714 0.79862 0.99819 0.95932 0.91113 1.45579 1.07434 1.27563 1.54810 1.19861 0.88945 0.80953 0.77724 1.90687 1.64551 1.42227 1.46268 1.23254 0.95485 1.02391 1.05061 1.84700 1.05221 1.33958 1.70789 1.22460 0.90264 1.15145 1.39772 0.91986 1.25528 0.94752 0.99672 0.95816 1.70012 1.04810 1.36743 1.43925 0.85892 0.80649 0.79694 0.80293 1.18686 1.18293 1.16176 1.20975 0.81488 0.99994 0.87883 0.85301 1.86622 1.18101 1.35932 1.94213 1.20599 0.96791 0.97184 0.97845 1.21248 0.95237 1.00699 0.96635 1.21452 1.00425 0.96435 0.96188 1.21490 0.95951 0.96878 1.00753 1.21391 0.96394 1.00264 0.96641 1.21120 1.00776 0.95933 0.96517 0.89033 0.93223 0.93402 0.93893 0.92870 0.92290 0.90553 0.75140 0.86981 0.87248 0.91362 0.76484 0.84015 0.84472 0.84851 0.84777 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.21 71.98 0.59 -1.85 16 2 C -0.10 -2.06 2.87 -10.79 -0.03 -2.10 16 3 C -0.15 -2.36 8.62 71.98 0.62 -1.74 16 4 C 0.13 2.65 1.67 44.99 0.08 2.73 16 5 H 0.07 1.75 7.55 -2.39 -0.02 1.73 16 6 N -0.70 -16.12 3.99 -442.53 -1.77 -17.89 16 7 C 0.54 18.31 7.81 87.66 0.68 19.00 16 8 O -0.56 -23.60 15.53 -3.05 -0.05 -23.65 16 9 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 10 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 11 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 12 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 13 C 0.05 2.80 5.50 84.86 0.47 3.27 16 14 N -0.92 -55.81 13.97 21.65 0.30 -55.51 16 15 Si 0.91 45.08 27.74 68.60 1.90 46.98 16 16 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 19 C 0.16 2.29 2.52 29.85 0.08 2.37 16 20 H 0.13 1.58 5.85 -2.39 -0.01 1.57 16 21 O -0.54 -7.30 10.01 -148.98 -1.49 -8.79 16 22 C -0.12 -2.07 4.49 -19.87 -0.09 -2.16 16 23 C -0.12 -1.93 8.78 22.27 0.20 -1.73 16 24 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 25 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 26 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 27 C -0.13 -2.17 9.31 22.27 0.21 -1.97 16 28 H 0.09 1.38 5.98 -2.38 -0.01 1.37 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.84 8.09 -2.39 -0.02 0.82 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 0.87 7.82 -2.39 -0.02 0.85 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.96 6.10 -2.39 -0.01 0.94 16 35 H 0.41 7.20 7.64 -92.71 -0.71 6.49 16 36 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 37 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.38 3.61 7.30 -74.06 -0.54 3.07 16 40 H 0.14 1.58 7.96 -2.91 -0.02 1.56 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 44 H 0.13 1.75 6.62 -2.91 -0.02 1.73 16 Total: -1.00 -74.41 368.97 2.17 -72.24 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.27 Total: 20.59 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 4.59 Total: -24.16 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.46 Total: -73.40 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.54 Total: -32.44 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -74.41 2.17 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790393667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.303 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds